FFCP PHASE1:Hg19::chr8:70983462..70983471,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=63978 | |EntrezGene=63978 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14001 | |HGNC=14001 | ||
|TSSclassifier=strong | |||
|UniProt=Q9GZV8 | |UniProt=Q9GZV8 | ||
|association_with_transcript=90bp_to_ENST00000276594,NM_024504,uc003xym.2_5end | |association_with_transcript=90bp_to_ENST00000276594,NM_024504,uc003xym.2_5end | ||
|cluster_id=chr8:70983462..70983471,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_4_at_PRDM14_5end | |description=CAGE_peak_4_at_PRDM14_5end | ||
|id=chr8:70983462..70983471,- | |id=chr8:70983462..70983471,- | ||
|ontology_enrichment_celltype=CL:0002322!3.64e-66!5;CL:0000039!1.93e-30!7;CL:0000586!1.93e-30!7;CL:0000540!3.60e-20!6;CL:0000031!3.60e-20!6;CL:0000404!3.60e-20!6;CL:0000047!2.68e-15!8;CL:0000148!1.62e-12!10;CL:0000541!1.62e-12!10;CL:0000147!4.19e-09!14;CL:0000133!1.87e-07!59 | |ontology_enrichment_celltype=CL:0002322!3.64e-66!5;CL:0000039!1.93e-30!7;CL:0000586!1.93e-30!7;CL:0000540!3.60e-20!6;CL:0000031!3.60e-20!6;CL:0000404!3.60e-20!6;CL:0000047!2.68e-15!8;CL:0000148!1.62e-12!10;CL:0000541!1.62e-12!10;CL:0000147!4.19e-09!14;CL:0000133!1.87e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002322;3.64e-66;5!CL:0000039;1.54e-30;7!CL:0000586;1.54e-30;7!CL:0002321;3.55e-22;15!CL:0000540;3.72e-20;6!CL:0000404;3.72e-20;6!CL:0000148;1.65e-12;10!CL:0000147;4.24e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.64e-66,5;CL:0000039,1.93e-30,7;CL:0000586,1.93e-30,7;CL:0000540,3.60e-20,6;CL:0000031,3.60e-20,6;CL:0000404,3.60e-20,6;CL:0000047,2.68e-15,8;CL:0000148,1.62e-12,10;CL:0000541,1.62e-12,10;CL:0000147,4.19e-09,14;CL:0000133,1.87e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.25e-33;10!UBERON:0005564;3.25e-33;10!CL:0000031;3.72e-20;6 | |||
|ontology_enrichment_disease=DOID:3095!1.89e-21!22;DOID:2994!1.89e-21!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;1.82e-21;22!DOID:2994;1.82e-21;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.89e-21,22;DOID:2994,1.89e-21,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!1.08e-26!8;UBERON:0003135!1.60e-19!11;UBERON:0000991!7.90e-16!21;UBERON:0009196!7.90e-16!21;UBERON:0009117!7.90e-16!21;UBERON:0005564!7.90e-16!21;UBERON:0004176!4.13e-15!22;UBERON:0003101!6.57e-10!22;UBERON:0000079!6.57e-10!22;UBERON:0002323!3.36e-07!46;UBERON:0003133!6.78e-07!48;UBERON:0004458!9.42e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;8.88e-27;8!UBERON:0003135;1.39e-19;11!UBERON:0000991;7.30e-16;21!UBERON:0000922;3.09e-13;49!UBERON:0003101;6.12e-10;22!UBERON:0000079;6.12e-10;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,1.08e-26,8;UBERON:0003135,1.60e-19,11;UBERON:0000991,7.90e-16,21;UBERON:0009196,7.90e-16,21;UBERON:0009117,7.90e-16,21;UBERON:0005564,7.90e-16,21;UBERON:0004176,4.13e-15,22;UBERON:0003101,6.57e-10,22;UBERON:0000079,6.57e-10,22;UBERON:0002323,3.36e-07,46;UBERON:0003133,6.78e-07,48;UBERON:0004458,9.42e-07,49 | |||
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|short_description=p4@PRDM14 | |short_description=p4@PRDM14 | ||
}} | }} |
Latest revision as of 23:51, 18 September 2015
Short description: | p4@PRDM14 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PRDM14_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 90bp_to_ENST00000276594, NM_024504, uc003xym.2_5end |
EntrezGene: | PRDM14 |
HGNC: | 14001 |
UniProt: | Q9GZV8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.64e-66 | 5 |
germ line cell | 1.93e-30 | 7 |
germ cell | 1.93e-30 | 7 |
neuron | 3.60e-20 | 6 |
neuroblast | 3.60e-20 | 6 |
electrically signaling cell | 3.60e-20 | 6 |
neuronal stem cell | 2.68e-15 | 8 |
melanocyte | 1.62e-12 | 10 |
melanoblast | 1.62e-12 | 10 |
pigment cell | 4.19e-09 | 14 |
neurectodermal cell | 1.87e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
testis | 1.08e-26 | 8 |
male reproductive organ | 1.60e-19 | 11 |
gonad | 7.90e-16 | 21 |
indifferent external genitalia | 7.90e-16 | 21 |
indifferent gonad | 7.90e-16 | 21 |
gonad primordium | 7.90e-16 | 21 |
external genitalia | 4.13e-15 | 22 |
male organism | 6.57e-10 | 22 |
male reproductive system | 6.57e-10 | 22 |
body cavity | 3.36e-07 | 46 |
reproductive organ | 6.78e-07 | 48 |
body cavity or lining | 9.42e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.89e-21 | 22 |
germ cell cancer | 1.89e-21 | 22 |