FFCP PHASE1:Hg19::chr5:82502101..82502118,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7518 | |EntrezGene=7518 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_noncoding | |||
|HGNC=12831 | |HGNC=12831 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-1bp_to_uc003kig.2_5end | |association_with_transcript=-1bp_to_uc003kig.2_5end | ||
|cluster_id=chr5:82502101..82502118,+ | |||
|coexpression_cluster_id=C87 | |coexpression_cluster_id=C87 | ||
|description=CAGE_peak_4_at_XRCC4_5end | |description=CAGE_peak_4_at_XRCC4_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:1000415!2.99e-10!2 | |ontology_enrichment_celltype=CL:1000415!2.99e-10!2 | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.62e-23;3!UBERON:0006238;2.32e-07;10 | |ontology_enrichment_development_v019=UBERON:0003056;2.62e-23;3!UBERON:0006238;2.32e-07;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5409;8.69e-18;4!DOID:1325;8.99e-11;7!DOID:3904;8.99e-11;7!DOID:3905;1.12e-08;9!DOID:3093;7.48e-07;11 | |ontology_enrichment_disease_v019=DOID:5409;8.69e-18;4!DOID:1325;8.99e-11;7!DOID:3904;8.99e-11;7!DOID:3905;1.12e-08;9!DOID:3093;7.48e-07;11 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,8.69e-18,4;DOID:1325,8.99e-11,7;DOID:3904,8.99e-11,7;DOID:3905,1.12e-08,9;DOID:3093,7.48e-07,11 | |||
|ontology_enrichment_uberon=UBERON:0000349!1.16e-57!5;UBERON:0001876!4.73e-37!2;UBERON:0001954!9.84e-37!2;UBERON:0003022!9.84e-37!2;UBERON:0002421!9.84e-37!2;UBERON:0002600!9.84e-37!2;UBERON:0002619!6.50e-13!22;UBERON:0000956!1.83e-11!25;UBERON:0000203!1.83e-11!25;UBERON:0002780!7.53e-11!41;UBERON:0001890!7.53e-11!41;UBERON:0006240!7.53e-11!41;UBERON:0003080!1.34e-10!42;UBERON:0001905!2.07e-10!2;UBERON:0002757!2.07e-10!2;UBERON:0010134!2.07e-10!2;UBERON:0002784!2.07e-10!2;UBERON:0005408!2.07e-10!2;UBERON:0001899!2.07e-10!2;UBERON:0003056!2.13e-10!61;UBERON:0001871!4.84e-10!7;UBERON:0001869!4.24e-09!32;UBERON:0000955!4.67e-09!69;UBERON:0006238!4.67e-09!69;UBERON:0002420!5.00e-09!9;UBERON:0007245!5.00e-09!9;UBERON:0010009!5.00e-09!9;UBERON:0010011!5.00e-09!9;UBERON:0000454!5.00e-09!9;UBERON:0002791!7.70e-09!33;UBERON:0002020!1.35e-08!34;UBERON:0003528!1.35e-08!34;UBERON:0001893!1.35e-08!34;UBERON:0001049!7.23e-08!57;UBERON:0005068!7.23e-08!57;UBERON:0006241!7.23e-08!57;UBERON:0007135!7.23e-08!57;UBERON:0001017!1.27e-07!82;UBERON:0002616!1.32e-07!59;UBERON:0003075!2.36e-07!86;UBERON:0007284!2.36e-07!86;UBERON:0005743!2.88e-07!86;UBERON:0002110!2.97e-07!3;UBERON:0006242!2.97e-07!3;UBERON:0002346!5.10e-07!90 | |ontology_enrichment_uberon=UBERON:0000349!1.16e-57!5;UBERON:0001876!4.73e-37!2;UBERON:0001954!9.84e-37!2;UBERON:0003022!9.84e-37!2;UBERON:0002421!9.84e-37!2;UBERON:0002600!9.84e-37!2;UBERON:0002619!6.50e-13!22;UBERON:0000956!1.83e-11!25;UBERON:0000203!1.83e-11!25;UBERON:0002780!7.53e-11!41;UBERON:0001890!7.53e-11!41;UBERON:0006240!7.53e-11!41;UBERON:0003080!1.34e-10!42;UBERON:0001905!2.07e-10!2;UBERON:0002757!2.07e-10!2;UBERON:0010134!2.07e-10!2;UBERON:0002784!2.07e-10!2;UBERON:0005408!2.07e-10!2;UBERON:0001899!2.07e-10!2;UBERON:0003056!2.13e-10!61;UBERON:0001871!4.84e-10!7;UBERON:0001869!4.24e-09!32;UBERON:0000955!4.67e-09!69;UBERON:0006238!4.67e-09!69;UBERON:0002420!5.00e-09!9;UBERON:0007245!5.00e-09!9;UBERON:0010009!5.00e-09!9;UBERON:0010011!5.00e-09!9;UBERON:0000454!5.00e-09!9;UBERON:0002791!7.70e-09!33;UBERON:0002020!1.35e-08!34;UBERON:0003528!1.35e-08!34;UBERON:0001893!1.35e-08!34;UBERON:0001049!7.23e-08!57;UBERON:0005068!7.23e-08!57;UBERON:0006241!7.23e-08!57;UBERON:0007135!7.23e-08!57;UBERON:0001017!1.27e-07!82;UBERON:0002616!1.32e-07!59;UBERON:0003075!2.36e-07!86;UBERON:0007284!2.36e-07!86;UBERON:0005743!2.88e-07!86;UBERON:0002110!2.97e-07!3;UBERON:0006242!2.97e-07!3;UBERON:0002346!5.10e-07!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0001954;7.05e-34;2!UBERON:0003022;7.05e-34;2!UBERON:0002421;7.05e-34;2!UBERON:0002600;7.05e-34;2!UBERON:0000966;1.40e-14;5!UBERON:0005388;1.40e-14;5!UBERON:0001802;1.40e-14;5!UBERON:0000349;1.83e-14;5 | |ontology_enrichment_uberon_v019=UBERON:0001954;7.05e-34;2!UBERON:0003022;7.05e-34;2!UBERON:0002421;7.05e-34;2!UBERON:0002600;7.05e-34;2!UBERON:0000966;1.40e-14;5!UBERON:0005388;1.40e-14;5!UBERON:0001802;1.40e-14;5!UBERON:0000349;1.83e-14;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001954,7.05e-34,2;UBERON:0003022,7.05e-34,2;UBERON:0002421,7.05e-34,2;UBERON:0002600,7.05e-34,2;UBERON:0000349,1.83e-14,5;UBERON:0000966,2.19e-12,6;UBERON:0005388,2.19e-12,6;UBERON:0001802,2.19e-12,6 | |||
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|short_description=p4@XRCC4 | |short_description=p4@XRCC4 | ||
}} | }} |
Latest revision as of 00:29, 19 September 2015
Short description: | p4@XRCC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_XRCC4_5end |
Coexpression cluster: | C87_retinoblastoma_left_nonsmall_heart_small_diaphragm_bronchogenic |
Association with transcript: | -1bp_to_uc003kig.2_5end |
EntrezGene: | XRCC4 |
HGNC: | 12831 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Ammon's horn | 7.05e-34 | 2 |
lobe parts of cerebral cortex | 7.05e-34 | 2 |
hippocampal formation | 7.05e-34 | 2 |
limbic lobe | 7.05e-34 | 2 |
limbic system | 1.83e-14 | 5 |
retina | 2.19e-12 | 6 |
photoreceptor array | 2.19e-12 | 6 |
posterior segment of eyeball | 2.19e-12 | 6 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 8.69e-18 | 4 |
bronchus cancer | 8.99e-11 | 7 |
bronchogenic carcinoma | 8.99e-11 | 7 |
lung carcinoma | 1.12e-08 | 9 |
nervous system cancer | 7.48e-07 | 11 |