FFCP PHASE1:Hg19::chr1:182992405..182992422,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3915 | |EntrezGene=3915 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6492 | |HGNC=6492 | ||
|TSSclassifier=strong | |||
|UniProt=P11047,Q6NVY8 | |UniProt=P11047,Q6NVY8 | ||
|association_with_transcript=-172bp_to_NM_002293,uc001gpx.2,uc001gpy.3_5end | |association_with_transcript=-172bp_to_NM_002293,uc001gpx.2,uc001gpy.3_5end | ||
|cluster_id=chr1:182992405..182992422,+ | |||
|coexpression_cluster_id=C1253 | |coexpression_cluster_id=C1253 | ||
|description=CAGE_peak_5_at_LAMC1_5end | |description=CAGE_peak_5_at_LAMC1_5end | ||
|id=chr1:182992405..182992422,+ | |id=chr1:182992405..182992422,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.75e-26!180;CL:0000222!1.65e-18!119;CL:0000057!1.10e-17!75;CL:0000220!2.17e-16!246;CL:0002321!6.34e-16!248;CL:0000680!3.29e-15!57;CL:0000056!3.29e-15!57;CL:0000355!3.29e-15!57;CL:0000187!1.65e-14!54;CL:0000183!3.65e-14!59;CL:0000192!6.13e-12!42;CL:0000514!6.13e-12!42;CL:0000393!6.21e-12!60;CL:0000211!6.21e-12!60;CL:0000359!4.09e-11!32;CL:0000136!2.97e-08!15;CL:0002620!3.74e-08!23;CL:0000144!1.31e-07!625;CL:0002494!2.73e-07!16;CL:0002334!4.80e-07!12;CL:0002371!6.49e-07!591 | |ontology_enrichment_celltype=CL:0000055!3.75e-26!180;CL:0000222!1.65e-18!119;CL:0000057!1.10e-17!75;CL:0000220!2.17e-16!246;CL:0002321!6.34e-16!248;CL:0000680!3.29e-15!57;CL:0000056!3.29e-15!57;CL:0000355!3.29e-15!57;CL:0000187!1.65e-14!54;CL:0000183!3.65e-14!59;CL:0000192!6.13e-12!42;CL:0000514!6.13e-12!42;CL:0000393!6.21e-12!60;CL:0000211!6.21e-12!60;CL:0000359!4.09e-11!32;CL:0000136!2.97e-08!15;CL:0002620!3.74e-08!23;CL:0000144!1.31e-07!625;CL:0002494!2.73e-07!16;CL:0002334!4.80e-07!12;CL:0002371!6.49e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0000359;3.08e-11;32!CL:0000134;2.45e-10;55!CL:0000192;1.23e-09;43!CL:0000723;2.09e-09;61!CL:0000048;2.91e-09;58!CL:0002620;1.03e-08;23!CL:0000187;1.10e-08;55!CL:0000136;4.97e-08;13!CL:0002494;8.45e-08;16!CL:0000057;1.63e-07;73!CL:0000393;1.76e-07;61!CL:0000211;1.76e-07;61!CL:0002334;1.91e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,2.05e-20,121;CL:0000057,4.02e-19,76;CL:0000680,1.73e-16,58;CL:0000056,1.73e-16,58;CL:0000355,1.73e-16,58;CL:0000187,9.82e-16,55;CL:0002321,3.02e-14,250;CL:0000393,4.49e-13,61;CL:0000211,4.49e-13,61;CL:0000192,5.81e-13,43;CL:0000514,5.81e-13,43;CL:0000359,7.74e-12,32;CL:0000136,9.20e-09,15;CL:0002620,1.18e-08,23;CL:0002494,1.00e-07,16;CL:0002334,1.83e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;1.23e-09;43!CL:0000355;1.61e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!3.49e-07!14 | |ontology_enrichment_disease=DOID:2394!3.49e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.53e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.30e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004872!2.83e-19!84;UBERON:0002049!3.81e-18!79;UBERON:0007798!3.81e-18!79;UBERON:0003914!1.19e-17!118;UBERON:0000486!2.32e-17!82;UBERON:0000914!2.96e-17!83;UBERON:0002329!2.96e-17!83;UBERON:0003077!2.96e-17!83;UBERON:0003059!2.96e-17!83;UBERON:0007282!2.96e-17!83;UBERON:0009618!2.96e-17!83;UBERON:0007285!2.96e-17!83;UBERON:0002100!7.13e-17!216;UBERON:0005256!1.09e-16!143;UBERON:0004290!1.53e-16!70;UBERON:0000055!1.66e-16!69;UBERON:0002385!7.36e-16!63;UBERON:0001015!7.36e-16!63;UBERON:0000383!7.36e-16!63;UBERON:0001981!8.62e-16!60;UBERON:0007500!8.62e-16!60;UBERON:0004537!8.62e-16!60;UBERON:0006965!8.62e-16!60;UBERON:0001134!1.91e-15!61;UBERON:0002036!1.91e-15!61;UBERON:0003082!1.91e-15!61;UBERON:0000490!3.19e-15!138;UBERON:0001009!2.16e-14!113;UBERON:0001637!4.20e-14!42;UBERON:0003509!4.20e-14!42;UBERON:0004572!4.20e-14!42;UBERON:0004535!4.56e-14!110;UBERON:0003104!8.97e-13!238;UBERON:0009142!8.97e-13!238;UBERON:0000468!1.21e-12!659;UBERON:0004573!1.87e-12!33;UBERON:0004571!1.87e-12!33;UBERON:0000475!4.21e-12!365;UBERON:0003102!5.61e-11!95;UBERON:0000467!3.64e-10!625;UBERON:0000480!6.45e-10!626;UBERON:0000119!1.34e-09!312;UBERON:0000926!1.49e-09!448;UBERON:0004120!1.49e-09!448;UBERON:0006603!1.49e-09!448;UBERON:0000477!2.96e-09!286;UBERON:0000483!3.00e-09!309;UBERON:0000481!5.98e-09!347;UBERON:0007100!3.80e-08!27;UBERON:0004111!3.86e-08!241;UBERON:0004923!4.43e-08!57;UBERON:0000947!4.90e-08!21;UBERON:0010191!4.90e-08!21;UBERON:0000948!5.32e-08!24;UBERON:0005498!5.32e-08!24;UBERON:0004140!5.32e-08!24;UBERON:0009881!5.32e-08!24;UBERON:0004141!5.32e-08!24;UBERON:0003084!5.32e-08!24;UBERON:0007005!5.32e-08!24;UBERON:0004139!5.32e-08!24;UBERON:0004291!5.32e-08!24;UBERON:0001013!1.54e-07!14;UBERON:0002199!1.55e-07!45;UBERON:0002416!1.55e-07!45 | |ontology_enrichment_uberon=UBERON:0004872!2.83e-19!84;UBERON:0002049!3.81e-18!79;UBERON:0007798!3.81e-18!79;UBERON:0003914!1.19e-17!118;UBERON:0000486!2.32e-17!82;UBERON:0000914!2.96e-17!83;UBERON:0002329!2.96e-17!83;UBERON:0003077!2.96e-17!83;UBERON:0003059!2.96e-17!83;UBERON:0007282!2.96e-17!83;UBERON:0009618!2.96e-17!83;UBERON:0007285!2.96e-17!83;UBERON:0002100!7.13e-17!216;UBERON:0005256!1.09e-16!143;UBERON:0004290!1.53e-16!70;UBERON:0000055!1.66e-16!69;UBERON:0002385!7.36e-16!63;UBERON:0001015!7.36e-16!63;UBERON:0000383!7.36e-16!63;UBERON:0001981!8.62e-16!60;UBERON:0007500!8.62e-16!60;UBERON:0004537!8.62e-16!60;UBERON:0006965!8.62e-16!60;UBERON:0001134!1.91e-15!61;UBERON:0002036!1.91e-15!61;UBERON:0003082!1.91e-15!61;UBERON:0000490!3.19e-15!138;UBERON:0001009!2.16e-14!113;UBERON:0001637!4.20e-14!42;UBERON:0003509!4.20e-14!42;UBERON:0004572!4.20e-14!42;UBERON:0004535!4.56e-14!110;UBERON:0003104!8.97e-13!238;UBERON:0009142!8.97e-13!238;UBERON:0000468!1.21e-12!659;UBERON:0004573!1.87e-12!33;UBERON:0004571!1.87e-12!33;UBERON:0000475!4.21e-12!365;UBERON:0003102!5.61e-11!95;UBERON:0000467!3.64e-10!625;UBERON:0000480!6.45e-10!626;UBERON:0000119!1.34e-09!312;UBERON:0000926!1.49e-09!448;UBERON:0004120!1.49e-09!448;UBERON:0006603!1.49e-09!448;UBERON:0000477!2.96e-09!286;UBERON:0000483!3.00e-09!309;UBERON:0000481!5.98e-09!347;UBERON:0007100!3.80e-08!27;UBERON:0004111!3.86e-08!241;UBERON:0004923!4.43e-08!57;UBERON:0000947!4.90e-08!21;UBERON:0010191!4.90e-08!21;UBERON:0000948!5.32e-08!24;UBERON:0005498!5.32e-08!24;UBERON:0004140!5.32e-08!24;UBERON:0009881!5.32e-08!24;UBERON:0004141!5.32e-08!24;UBERON:0003084!5.32e-08!24;UBERON:0007005!5.32e-08!24;UBERON:0004139!5.32e-08!24;UBERON:0004291!5.32e-08!24;UBERON:0001013!1.54e-07!14;UBERON:0002199!1.55e-07!45;UBERON:0002416!1.55e-07!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.59e-12;33!UBERON:0004571;2.59e-12;33!UBERON:0001637;8.01e-11;42!UBERON:0003509;8.01e-11;42!UBERON:0004572;8.01e-11;42!UBERON:0002385;5.98e-09;31!UBERON:0001015;5.98e-09;31!UBERON:0000383;5.98e-09;31!UBERON:0007500;9.69e-09;56!UBERON:0001981;9.69e-09;56!UBERON:0004537;9.69e-09;56!UBERON:0000055;1.99e-08;65!UBERON:0000947;2.29e-08;21!UBERON:0010191;2.29e-08;21!UBERON:0007100;3.38e-08;25!UBERON:0001013;4.44e-08;14!UBERON:0000948;4.53e-08;22!UBERON:0002049;6.39e-08;75!UBERON:0007798;6.39e-08;75!UBERON:0002384;1.67e-07;198 | |||
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| ||
|short_description=p5@LAMC1 | |short_description=p5@LAMC1 | ||
}} | }} |
Latest revision as of 01:44, 19 September 2015
Short description: | p5@LAMC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LAMC1_5end |
Coexpression cluster: | C1253_Fibroblast_Smooth_Cardiac_Mesenchymal_Adipocyte_mesenchymal_Wilms |
Association with transcript: | -172bp_to_NM_002293, uc001gpx.2, uc001gpy.3_5end |
EntrezGene: | LAMC1 |
HGNC: | 6492 |
UniProt: | P11047Q6NVY8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 2.05e-20 | 121 |
fibroblast | 4.02e-19 | 76 |
muscle precursor cell | 1.73e-16 | 58 |
myoblast | 1.73e-16 | 58 |
multi-potent skeletal muscle stem cell | 1.73e-16 | 58 |
muscle cell | 9.82e-16 | 55 |
embryonic cell | 3.02e-14 | 250 |
electrically responsive cell | 4.49e-13 | 61 |
electrically active cell | 4.49e-13 | 61 |
smooth muscle cell | 5.81e-13 | 43 |
smooth muscle myoblast | 5.81e-13 | 43 |
vascular associated smooth muscle cell | 7.74e-12 | 32 |
fat cell | 9.20e-09 | 15 |
skin fibroblast | 1.18e-08 | 23 |
cardiocyte | 1.00e-07 | 16 |
preadipocyte | 1.83e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.30e-07 | 14 |