FFCP PHASE1:Hg19::chr3:111852061..111852127,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=257144 | |EntrezGene=257144 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20253 | |HGNC=20253 | ||
|TSSclassifier=strong | |||
|UniProt=C9JD17,F2Z3F7,C9JUG6,C9IY73,C9JY41,Q8N6F7 | |UniProt=C9JD17,F2Z3F7,C9JUG6,C9IY73,C9JY41,Q8N6F7 | ||
|association_with_transcript=0bp_to_ENST00000460387,ENST00000470085,ENST00000484193,ENST00000487901,ENST00000488580,uc003dys.1,uc003dyt.1_5end | |association_with_transcript=0bp_to_ENST00000460387,ENST00000470085,ENST00000484193,ENST00000487901,ENST00000488580,uc003dys.1,uc003dyt.1_5end | ||
|cluster_id=chr3:111852061..111852127,- | |||
|coexpression_cluster_id=C4267 | |||
|description=CAGE_peak_1_at_GCET2_5end | |description=CAGE_peak_1_at_GCET2_5end | ||
|id=chr3:111852061..111852127,- | |id=chr3:111852061..111852127,- | ||
|ontology_enrichment_celltype=CL:0000037!6.35e-38!172;CL:0000566!6.35e-38!172;CL:0000542!9.56e-37!53;CL:0000051!9.56e-37!53;CL:0000988!4.75e-36!182;CL:0000838!8.04e-36!52;CL:0000738!3.42e-35!140;CL:0002032!1.46e-33!165;CL:0000837!1.46e-33!165;CL:0002031!2.71e-29!124;CL:0002087!2.46e-28!119;CL:0000945!9.57e-22!24;CL:0000826!9.57e-22!24;CL:0000084!1.37e-13!25;CL:0000827!1.37e-13!25;CL:0000236!3.70e-13!14;CL:0000791!3.78e-13!18;CL:0000789!3.78e-13!18;CL:0002420!3.78e-13!18;CL:0002419!3.78e-13!18;CL:0000790!3.78e-13!18;CL:0000625!3.93e-10!11;CL:0000451!3.14e-08!10;CL:0000763!1.74e-07!112;CL:0000049!1.74e-07!112;CL:0000990!3.77e-07!8 | |ontology_enrichment_celltype=CL:0000037!6.35e-38!172;CL:0000566!6.35e-38!172;CL:0000542!9.56e-37!53;CL:0000051!9.56e-37!53;CL:0000988!4.75e-36!182;CL:0000838!8.04e-36!52;CL:0000738!3.42e-35!140;CL:0002032!1.46e-33!165;CL:0000837!1.46e-33!165;CL:0002031!2.71e-29!124;CL:0002087!2.46e-28!119;CL:0000945!9.57e-22!24;CL:0000826!9.57e-22!24;CL:0000084!1.37e-13!25;CL:0000827!1.37e-13!25;CL:0000236!3.70e-13!14;CL:0000791!3.78e-13!18;CL:0000789!3.78e-13!18;CL:0002420!3.78e-13!18;CL:0002419!3.78e-13!18;CL:0000790!3.78e-13!18;CL:0000625!3.93e-10!11;CL:0000451!3.14e-08!10;CL:0000763!1.74e-07!112;CL:0000049!1.74e-07!112;CL:0000990!3.77e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000945;1.11e-30;24!CL:0000542;4.33e-29;53!CL:0000084;8.87e-19;25!CL:0000791;1.38e-18;18!CL:0000789;1.38e-18;18!CL:0002419;1.38e-18;18!CL:0000236;6.37e-17;13!CL:0000625;6.35e-14;11!CL:0002087;7.60e-10;104!CL:0000451;1.88e-09;10!CL:0000990;6.72e-08;8!CL:0000624;9.78e-08;6!CL:0000738;1.48e-07;136!CL:0000453;2.59e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.10e-52,53;CL:0000051,4.10e-52,53;CL:0000838,8.91e-51,52;CL:0000037,3.50e-40,168;CL:0000738,9.52e-40,136;CL:0000988,1.02e-38,177;CL:0002032,1.38e-34,161;CL:0000837,1.38e-34,161;CL:0002087,1.97e-31,115;CL:0002031,2.79e-31,120;CL:0000945,1.16e-30,24;CL:0000826,1.16e-30,24;CL:0000084,1.11e-18,25;CL:0000827,1.11e-18,25;CL:0000791,1.44e-18,18;CL:0000789,1.44e-18,18;CL:0002420,1.44e-18,18;CL:0002419,1.44e-18,18;CL:0000790,1.44e-18,18;CL:0000236,2.92e-18,14;CL:0000625,6.67e-14,11;CL:0000451,1.51e-09,10;CL:0000990,5.44e-08,8;CL:0000624,9.77e-08,6;CL:0000453,2.62e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000051;4.33e-29;53!CL:0000790;1.38e-18;18 | |||
|ontology_enrichment_disease=DOID:2531!6.64e-08!51;DOID:0060083!6.64e-08!51;DOID:0060058!4.52e-07!10 | |ontology_enrichment_disease=DOID:2531!6.64e-08!51;DOID:0060083!6.64e-08!51;DOID:0060058!4.52e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:0060058;1.02e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,1.02e-08,10;DOID:2531,4.06e-08,51;DOID:0060083,4.06e-08,51 | |||
|ontology_enrichment_uberon=UBERON:0002390!1.14e-11!102;UBERON:0003061!1.14e-11!102;UBERON:0000178!3.30e-11!15;UBERON:0000179!3.30e-11!15;UBERON:0000463!3.30e-11!15;UBERON:0002193!2.59e-10!112;UBERON:0007023!1.84e-07!115 | |ontology_enrichment_uberon=UBERON:0002390!1.14e-11!102;UBERON:0003061!1.14e-11!102;UBERON:0000178!3.30e-11!15;UBERON:0000179!3.30e-11!15;UBERON:0000463!3.30e-11!15;UBERON:0002193!2.59e-10!112;UBERON:0007023!1.84e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.04e-13;15!UBERON:0000179;1.04e-13;15!UBERON:0000463;1.04e-13;15!UBERON:0002390;2.23e-12;32!UBERON:0002193;2.12e-07;42!UBERON:0004177;2.35e-07;5!UBERON:0005057;2.35e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.66e-14,15;UBERON:0000179,8.66e-14,15;UBERON:0000463,8.66e-14,15;UBERON:0002390,3.25e-10,98;UBERON:0003061,3.25e-10,98;UBERON:0002193,1.32e-09,108;UBERON:0004177,4.87e-07,7;UBERON:0005057,4.87e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,123.560477094437,98.8491096977347,104.60662836588,3.93364276848904,1.53531759238885,0.77408061658038,0.919421224478927,1.204823675113,0.369754010166788,328.69333206222,265.003449356554,7.92721186204087,4.9859586767869,3.40925560699241,6.51032612147556,2.91090116511902,5.50619232232265,1.54545340580512,0,0.755751887377619,0,0,0,0,0,0,0.236482229888585,0,0,2.70852973188684,0,0,0,0,0.641858054152187,0,0.659702600373432,0.199463657621632,0.426224750532694,0.290209238628584,0,0,0.75374599577023,0,0.217188844705117,1.21079900526674,1.10483290796269,0.632924774881769,0.422510572623884,0,0.419317291016752,0.112328631146495,0,0.32145117339416,0,0.19891667719909,0,58.0787606722365,56.2522769599995,64.044666278176,58.888770714178,58.0574181202218,50.00346227604,67.4265770240559,44.8405264631621,23.9069447025968,12.3319809767897,15.6732023531344,1.32171328579026,2.80254281490768,8.69167479757754,32.4571120687825,25.5456995786957,21.1769543969494,2.17342444007882,10.7554347989085,8.99550830895993,17.534405556712,2.33961959458865,7.07054177939609,8.63982188876122,7.85331204918545,1.28091319725675,1.04047478047903,4.93313713811028,1.65810010671509,4.63684937176084,37.9613601694875,36.385552620201,34.4967228556423,5.55215779218074,29.8911985009499,28.5210779750583,41.242209799179,55.7489475067169,47.5290921315186,46.5721501779703,47.2805873904206,61.3055867429664,68.7118996037902,58.7207585069162,41.0563998460523,7.05623601286563,6.68600489458768,9.26876184849914,0,0,0,0.361439152384566,0,0,0,0,0,0,0.263504357079378,0.523916301990851,0.364295288292542,1.85392221392215,0.97364218096405,1.56716763569341,1.72845348674525,4.5313218618015,5.14795419702115,2.60020250930695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.545492241181669,1.72082757233402,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77236972004421,39.2902158479039,0,0,0.98775256867763,0,0.201057944823262,7.4996640578409,0,0,0,0,0,0,0,0,0,0,3.44703808522356,0.468008530278475,0.445893486866185,0,0.671928512795438,1.55952606966625,1.34337784054272,2.61570544662566,1.15014803749563,0.985326475791887,3.87413109658195,10.5737338925794,5.04419836959365,9.34194007355212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.710783897485092,0,0,0,0,2.43247561282381,1.50677127429638,0,0,0,0,0,0,0,0,7.68419964787516,9.9188684435378,10.3957859386596,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,1.03473071292505,0,0,0.0868836144680828,0,0,16.9549781420768,9.70713903683776,8.4314770664721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0.0920809889358963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219259876645935,0,0,0,0,0.515205058238611,0,0,0,0.650060246036521,0,0,0,0,0,0,0,0,0,0.495854746082934,0,1.14851441245126,0.2023155617111,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0.6196469961995,0,0,0,0,0,0,0,0,0,0.577332676353072,1.34060455107157,0,0.847294206991012,0.43050537267123,1.68471475667626,1.33029046061003,2.29723400206959,30.9543041631623,31.3501254928374,27.3430649843598,28.8260448303925,27.9726345698612,29.1812990036723,29.1616976108582,23.7937552888281,0,0.962479855263359,1.22520107990516,76.7367113269218,53.3796088012846,70.1458575415363,1.11598390910176,5.58822240011887,12.8308597988686,0.846694330895531,2.27235358192189,4.49275484981534,5.934101654863,0.313359791546046,0,0,2.56940920165919,1.61439765752838,1.27753871307098,0.687010689511529,0,0.447352215784832,0,1.75849285861836,0,0,0.270455678475983,0.66614393599564,0,0,0.879049075631364,0,0.111443384277478,0,0,0,0,0,0,0,0,0,1.79323189425963,40.3374516675476,0,0,163.825876068683,0,0,0,1.02314474045374,1.67693789582787,2.3948309234694,0,0,0,0,0,0,0.724999575434793,0.568967241427498,0,0,12.0660180634513,0,0,0,0,0,0,0,0,0,0.278847488557207,0.538651809526579,0,0,0,0,0.31900115973192,0,0,0,0.784901281975124,0,0,0,0,0,1.43042921082341,0,0,0,0,1.99052386215701,1.14994833854341,1.83309043480088,0.889563386041866,3.45979029050208,1.98401704060365,0.269604531922708,0,0,210.187917176447,5.08728009223433,0,0.394584402849391,3.62972148145992,0,0.126373159256976,0,0,0,0,0,0,0,0,0,0.489961987071888,0.0870592065804026,0.52418000472609,0,0,0,0,3.87956065953678,0,0,0,0,0.0633107959558787,0,0,0.640358984218058,0,0,0.229073192331831,0,0,0,1.17847017308398,0,0,0,0,0,0,1.27746588066972,0,6.57218385698286,0.558564802544508,0.229160424011684,0.717873024576814,0.199679000498991,0,0,0,0,0,0,0,0,0,36.7482261165505,0,0,0,0,0,11.248694577575,5.41661368190565,0.121499113316049,0.670869375198532,0.551639951094387,0.157363764404994,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0.732761168390412,0,0,0,0,0,3.63077202730162,1.41483874589699,0.828478110694391,14.8849806543585,0,35.5634387272216,2.55336503108073,0,0,0,0,0,0,0,0.1251909307065,0,0.332787154610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| 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| ||
|short_description=p1@GCET2 | |short_description=p1@GCET2 | ||
}} | }} |
Latest revision as of 13:23, 19 September 2015
Short description: | p1@GCET2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GCET2_5end |
Coexpression cluster: | C4267_splenic_plasma_Burkitt_diffuse_xeroderma_b_migratory |
Association with transcript: | 0bp_to_ENST00000460387, ENST00000470085, ENST00000484193, ENST00000487901, ENST00000488580, uc003dys.1, uc003dyt.1_5end |
EntrezGene: | GCET2 |
HGNC: | 20253 |
UniProt: | C9JD17F2Z3F7C9JUG6C9IY73C9JY41Q8N6F7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.10e-52 | 53 |
common lymphoid progenitor | 4.10e-52 | 53 |
lymphoid lineage restricted progenitor cell | 8.91e-51 | 52 |
hematopoietic stem cell | 3.50e-40 | 168 |
leukocyte | 9.52e-40 | 136 |
hematopoietic cell | 1.02e-38 | 177 |
hematopoietic oligopotent progenitor cell | 1.38e-34 | 161 |
hematopoietic multipotent progenitor cell | 1.38e-34 | 161 |
nongranular leukocyte | 1.97e-31 | 115 |
hematopoietic lineage restricted progenitor cell | 2.79e-31 | 120 |
lymphocyte of B lineage | 1.16e-30 | 24 |
pro-B cell | 1.16e-30 | 24 |
T cell | 1.11e-18 | 25 |
pro-T cell | 1.11e-18 | 25 |
mature alpha-beta T cell | 1.44e-18 | 18 |
alpha-beta T cell | 1.44e-18 | 18 |
immature T cell | 1.44e-18 | 18 |
mature T cell | 1.44e-18 | 18 |
immature alpha-beta T cell | 1.44e-18 | 18 |
B cell | 2.92e-18 | 14 |
CD8-positive, alpha-beta T cell | 6.67e-14 | 11 |
dendritic cell | 1.51e-09 | 10 |
conventional dendritic cell | 5.44e-08 | 8 |
CD4-positive, alpha-beta T cell | 9.77e-08 | 6 |
Langerhans cell | 2.62e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
blood | 8.66e-14 | 15 |
haemolymphatic fluid | 8.66e-14 | 15 |
organism substance | 8.66e-14 | 15 |
hematopoietic system | 3.25e-10 | 98 |
blood island | 3.25e-10 | 98 |
hemolymphoid system | 1.32e-09 | 108 |
hemopoietic organ | 4.87e-07 | 7 |
immune organ | 4.87e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 1.02e-08 | 10 |
hematologic cancer | 4.06e-08 | 51 |
immune system cancer | 4.06e-08 | 51 |