FFCP PHASE1:Hg19::chr1:89530819..89530844,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2633 | |EntrezGene=2633 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4182 | |HGNC=4182 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=68bp_to_ENST00000469194_5end | |association_with_transcript=68bp_to_ENST00000469194_5end | ||
|cluster_id=chr1:89530819..89530844,- | |||
|coexpression_cluster_id=C7 | |||
|description=CAGE_peak_9_at_GBP1_5end | |description=CAGE_peak_9_at_GBP1_5end | ||
|id=chr1:89530819..89530844,- | |id=chr1:89530819..89530844,- | ||
|ontology_enrichment_celltype=CL:0002057!2.06e-29!42;CL:0000860!4.67e-27!45;CL:0002009!1.79e-18!65;CL:0002194!2.67e-17!63;CL:0000576!2.67e-17!63;CL:0000040!2.67e-17!63;CL:0000559!2.67e-17!63;CL:0000766!1.34e-16!76;CL:0000557!1.95e-16!71;CL:0000839!4.88e-15!70;CL:0000763!1.73e-10!112;CL:0000049!1.73e-10!112;CL:0000738!8.83e-10!140;CL:0002031!9.15e-10!124;CL:0002087!2.18e-09!119;CL:0002032!2.48e-07!165;CL:0000837!2.48e-07!165;CL:0000037!8.75e-07!172;CL:0000566!8.75e-07!172 | |ontology_enrichment_celltype=CL:0002057!2.06e-29!42;CL:0000860!4.67e-27!45;CL:0002009!1.79e-18!65;CL:0002194!2.67e-17!63;CL:0000576!2.67e-17!63;CL:0000040!2.67e-17!63;CL:0000559!2.67e-17!63;CL:0000766!1.34e-16!76;CL:0000557!1.95e-16!71;CL:0000839!4.88e-15!70;CL:0000763!1.73e-10!112;CL:0000049!1.73e-10!112;CL:0000738!8.83e-10!140;CL:0002031!9.15e-10!124;CL:0002087!2.18e-09!119;CL:0002032!2.48e-07!165;CL:0000837!2.48e-07!165;CL:0000037!8.75e-07!172;CL:0000566!8.75e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.40e-67;33!CL:0002057;1.40e-67;33!CL:0000473;2.78e-46;39!CL:0000234;2.78e-46;39!CL:0000576;3.67e-37;48!CL:0000766;2.10e-17;69!CL:0000763;6.77e-13;100!CL:0002087;7.87e-10;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.96e-60,42;CL:0002057,3.96e-60,42;CL:0000473,1.83e-52,48;CL:0000234,1.83e-52,48;CL:0002194,1.01e-41,59;CL:0000576,1.01e-41,59;CL:0000040,1.01e-41,59;CL:0000559,1.01e-41,59;CL:0002009,2.46e-40,61;CL:0000766,3.16e-39,72;CL:0000839,3.14e-37,66;CL:0000557,1.16e-36,67;CL:0000763,7.99e-26,108;CL:0000049,7.99e-26,108;CL:0002087,6.36e-21,115;CL:0000738,2.98e-20,136;CL:0002031,5.34e-20,120;CL:0002032,6.76e-17,161;CL:0000837,6.76e-17,161;CL:0000037,3.92e-16,168;CL:0000988,3.07e-15,177;CL:0000134,8.46e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.19e-43;42!CL:0000049;2.41e-09;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.81e-15!80;UBERON:0001474!5.57e-14!86;UBERON:0002405!4.16e-13!115;UBERON:0004765!3.57e-12!101;UBERON:0001434!3.57e-12!101;UBERON:0002390!5.86e-12!102;UBERON:0003061!5.86e-12!102;UBERON:0002193!1.94e-11!112;UBERON:0002204!7.72e-08!167 | |ontology_enrichment_uberon=UBERON:0002371!1.81e-15!80;UBERON:0001474!5.57e-14!86;UBERON:0002405!4.16e-13!115;UBERON:0004765!3.57e-12!101;UBERON:0001434!3.57e-12!101;UBERON:0002390!5.86e-12!102;UBERON:0003061!5.86e-12!102;UBERON:0002193!1.94e-11!112;UBERON:0002204!7.72e-08!167 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.18e-32,76;UBERON:0001474,8.49e-30,82;UBERON:0004765,4.66e-27,90;UBERON:0002405,3.77e-26,93;UBERON:0002390,9.26e-25,98;UBERON:0003061,9.26e-25,98;UBERON:0001434,3.05e-24,100;UBERON:0002193,2.33e-22,108;UBERON:0002204,5.53e-14,167;UBERON:0003081,3.09e-11,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,14.9600044007518,8.70946402198942,14.6618982530923,0.689491361473237,0,0,0,0,0,1.53041946185451,0.641858054152187,0.639337125799041,4.28806690242731,4.3882004676759,8.09827026012119,4.35313857942876,0,0.622822248995575,4.77372463987812,5.73631210262222,4.77815458351257,4.23779651843358,1.10483290796269,2.21523671208619,0,0,0,0,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0.651083453856419,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0.19924798825107,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0.23056390438806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0.0984274815147488,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0.50313580350515,0,0,0,0,0,0.159296767163702,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.0814032686109745,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,14.9600044007518,8.70946402198942,14.6618982530923,0.689491361473237,0,0,0,0,0,1.53041946185451,0.641858054152187,0.639337125799041,4.28806690242731,4.3882004676759,8.09827026012119,4.35313857942876,0,0.622822248995575,4.77372463987812,5.73631210262222,4.77815458351257,4.23779651843358,1.10483290796269,2.21523671208619,0,0,0,0,0.150176892841506,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334372990781356,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0.651083453856419,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99161459204025,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0.19924798825107,0,0,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153900517007594,0,0.23056390438806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0.0787831823072236,0,0,0.0984274815147488,0,0,0,0,0,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0.414239055347196,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0.50313580350515,0,0,0,0,0,0.159296767163702,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123935764259002,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.0814032686109745,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p9@GBP1 | |short_description=p9@GBP1 | ||
}} | }} |
Latest revision as of 16:27, 19 September 2015
Short description: | p9@GBP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_GBP1_5end |
Coexpression cluster: | C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast |
Association with transcript: | 68bp_to_ENST00000469194_5end |
EntrezGene: | GBP1 |
HGNC: | 4182 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.96e-60 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.96e-60 | 42 |
defensive cell | 1.83e-52 | 48 |
phagocyte | 1.83e-52 | 48 |
monopoietic cell | 1.01e-41 | 59 |
monocyte | 1.01e-41 | 59 |
monoblast | 1.01e-41 | 59 |
promonocyte | 1.01e-41 | 59 |
macrophage dendritic cell progenitor | 2.46e-40 | 61 |
myeloid leukocyte | 3.16e-39 | 72 |
myeloid lineage restricted progenitor cell | 3.14e-37 | 66 |
granulocyte monocyte progenitor cell | 1.16e-36 | 67 |
myeloid cell | 7.99e-26 | 108 |
common myeloid progenitor | 7.99e-26 | 108 |
nongranular leukocyte | 6.36e-21 | 115 |
leukocyte | 2.98e-20 | 136 |
hematopoietic lineage restricted progenitor cell | 5.34e-20 | 120 |
hematopoietic oligopotent progenitor cell | 6.76e-17 | 161 |
hematopoietic multipotent progenitor cell | 6.76e-17 | 161 |
hematopoietic stem cell | 3.92e-16 | 168 |
hematopoietic cell | 3.07e-15 | 177 |
mesenchymal cell | 8.46e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.18e-32 | 76 |
bone element | 8.49e-30 | 82 |
skeletal element | 4.66e-27 | 90 |
immune system | 3.77e-26 | 93 |
hematopoietic system | 9.26e-25 | 98 |
blood island | 9.26e-25 | 98 |
skeletal system | 3.05e-24 | 100 |
hemolymphoid system | 2.33e-22 | 108 |
musculoskeletal system | 5.53e-14 | 167 |
lateral plate mesoderm | 3.09e-11 | 203 |