FFCP PHASE1:Hg19::chr6:72970377..72970387,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=22999 | |EntrezGene=22999 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17282 | |HGNC=17282 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-14bp_to_ENST00000463023_5end | |association_with_transcript=-14bp_to_ENST00000463023_5end | ||
|cluster_id=chr6:72970377..72970387,+ | |||
|coexpression_cluster_id=C1926 | |||
|description=CAGE_peak_20_at_RIMS1_5end | |description=CAGE_peak_20_at_RIMS1_5end | ||
|id=chr6:72970377..72970387,+ | |id=chr6:72970377..72970387,+ | ||
|ontology_enrichment_celltype=CL:0002590!6.37e-12!3;CL:0002150!1.94e-10!3;CL:0000861!1.94e-10!3;CL:0002549!1.53e-08!2;CL:0002575!1.84e-08!2 | |ontology_enrichment_celltype=CL:0002590!6.37e-12!3;CL:0002150!1.94e-10!3;CL:0000861!1.94e-10!3;CL:0002549!1.53e-08!2;CL:0002575!1.84e-08!2 | ||
|ontology_enrichment_celltype_v019=CL:0002549;1.08e-36;2!CL:0002590;3.18e-25;3!CL:0000222;1.30e-19;1!CL:0002569;5.42e-13;6!CL:0002575;2.99e-10;2!CL:0000081;1.67e-07;11!CL:0002592;2.97e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002549,1.42e-36,2;CL:0002590,3.38e-25,3;CL:0002569,5.76e-13,6;CL:0002575,2.49e-10,2;CL:0000081,1.73e-07,11;CL:0002592,2.97e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:4231;1.43e-10;2!DOID:1907;1.43e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:4231,1.43e-10,2;DOID:1907,1.43e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0002200!1.05e-19!11;UBERON:0006876!1.05e-19!11;UBERON:0005284!9.64e-19!5;UBERON:0002049!1.21e-08!79;UBERON:0007798!1.21e-08!79;UBERON:0003947!1.53e-08!2;UBERON:0005629!1.53e-08!2;UBERON:0005358!1.53e-08!2;UBERON:0001886!1.53e-08!2;UBERON:0004086!1.53e-08!2;UBERON:0005282!1.53e-08!2;UBERON:0005281!1.53e-08!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0005284;8.66e-58;5!UBERON:0005629;1.08e-36;2!UBERON:0005358;1.08e-36;2!UBERON:0001886;1.08e-36;2!UBERON:0004086;1.08e-36;2!UBERON:0005282;1.08e-36;2!UBERON:0005281;1.08e-36;2!UBERON:0006876;1.37e-26;11!UBERON:0003422;5.42e-13;6!UBERON:0003104;2.83e-11;7!UBERON:0009142;2.83e-11;7!UBERON:0002331;3.63e-08;10!UBERON:0003498;2.97e-07;3!UBERON:0005985;2.97e-07;3!UBERON:0001621;2.97e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005284,1.16e-57,5;UBERON:0005629,1.42e-36,2;UBERON:0005358,1.42e-36,2;UBERON:0001886,1.42e-36,2;UBERON:0004086,1.42e-36,2;UBERON:0005282,1.42e-36,2;UBERON:0005281,1.42e-36,2;UBERON:0006876,1.57e-26,11;UBERON:0003422,5.76e-13,6;UBERON:0002331,3.76e-08,10;UBERON:0000358,3.76e-08,10;UBERON:0000307,3.76e-08,10;UBERON:0000091,3.76e-08,10;UBERON:0000087,3.76e-08,10;UBERON:0007010,3.76e-08,10;UBERON:0007806,3.76e-08,10;UBERON:0008780,3.76e-08,10;UBERON:0005728,3.76e-08,10;UBERON:0001621,2.97e-07,3 | |||
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| ||
|short_description=p20@RIMS1 | |short_description=p20@RIMS1 | ||
}} | }} |
Latest revision as of 16:49, 19 September 2015
Short description: | p20@RIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_RIMS1_5end |
Coexpression cluster: | C1926_myxofibrosarcoma_Smooth_mesodermal_Multipotent_Fibroblast_basal_papillary |
Association with transcript: | -14bp_to_ENST00000463023_5end |
EntrezGene: | RIMS1 |
HGNC: | 17282 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of choroid plexus | 1.42e-36 | 2 |
smooth muscle cell of the brain vasculature | 3.38e-25 | 3 |
mesenchymal stem cell of umbilical cord | 5.76e-13 | 6 |
central nervous system pericyte | 2.49e-10 | 2 |
blood cell | 1.73e-07 | 11 |
smooth muscle cell of the coronary artery | 2.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
brain vasculature | 1.16e-57 | 5 |
vascular plexus | 1.42e-36 | 2 |
ventricle of nervous system | 1.42e-36 | 2 |
choroid plexus | 1.42e-36 | 2 |
brain ventricle | 1.42e-36 | 2 |
ventricular system of brain | 1.42e-36 | 2 |
ventricular system of central nervous system | 1.42e-36 | 2 |
vasculature of organ | 1.57e-26 | 11 |
mesenchyme of umbilical cord | 5.76e-13 | 6 |
umbilical cord | 3.76e-08 | 10 |
blastocyst | 3.76e-08 | 10 |
blastula | 3.76e-08 | 10 |
bilaminar disc | 3.76e-08 | 10 |
inner cell mass | 3.76e-08 | 10 |
cleaving embryo | 3.76e-08 | 10 |
connecting stalk | 3.76e-08 | 10 |
inner cell mass derived epiblast | 3.76e-08 | 10 |
extraembryonic mesoderm | 3.76e-08 | 10 |
coronary artery | 2.97e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
histiocytoma | 1.43e-10 | 2 |
malignant fibroxanthoma | 1.43e-10 | 2 |