FFCP PHASE1:Hg19::chr3:87040003..87040018,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=389136 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24327 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-151bp_to_ENST00000494229_5end | |||
|cluster_id=chr3:87040003..87040018,- | |||
|coexpression_cluster_id=C2757 | |||
|description=CAGE_peak_5_at_VGLL3_5end | |||
|id=chr3:87040003..87040018,- | |||
|ontology_enrichment_celltype=CL:0000057!4.84e-21!75;CL:0000055!3.76e-20!180;CL:0002620!5.57e-11!23;CL:0000680!3.71e-07!57;CL:0000056!3.71e-07!57;CL:0000355!3.71e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.43e-11;23!CL:0000057;5.48e-09;73!CL:0000349;8.32e-09;19!CL:0000134;2.47e-07;55!CL:0002320;7.16e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.86e-23,76;CL:0002620,1.57e-11,23;CL:0000349,7.34e-09,19;CL:0000136,3.37e-07,15;CL:0000680,4.52e-07,58;CL:0000056,4.52e-07,58;CL:0000355,4.52e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.13e-11!83;UBERON:0002329!1.13e-11!83;UBERON:0003077!1.13e-11!83;UBERON:0003059!1.13e-11!83;UBERON:0007282!1.13e-11!83;UBERON:0009618!1.13e-11!83;UBERON:0007285!1.13e-11!83;UBERON:0004923!2.96e-11!57;UBERON:0003102!2.27e-10!95;UBERON:0000475!6.69e-10!365;UBERON:0000478!8.07e-10!24;UBERON:0000468!1.06e-09!659;UBERON:0002199!2.20e-09!45;UBERON:0002416!2.20e-09!45;UBERON:0004290!2.41e-09!70;UBERON:0000481!3.43e-09!347;UBERON:0002100!3.65e-09!216;UBERON:0003104!4.82e-09!238;UBERON:0009142!4.82e-09!238;UBERON:0000486!7.06e-09!82;UBERON:0005256!1.16e-08!143;UBERON:0002097!2.00e-08!40;UBERON:0005631!4.26e-08!14;UBERON:0000158!4.26e-08!14;UBERON:0000064!2.47e-07!219;UBERON:0002385!3.54e-07!63;UBERON:0001015!3.54e-07!63;UBERON:0000383!3.54e-07!63;UBERON:0001134!3.59e-07!61;UBERON:0002036!3.59e-07!61;UBERON:0003082!3.59e-07!61;UBERON:0000467!9.43e-07!625 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.16e-10;24!UBERON:0002384;1.65e-07;198!UBERON:0002097;5.28e-07;41!UBERON:0005631;6.71e-07;10!UBERON:0000158;6.71e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004923,4.36e-11,66;UBERON:0000478,1.00e-10,24;UBERON:0002199,7.66e-10,46;UBERON:0002416,7.66e-10,46;UBERON:0002329,2.76e-09,71;UBERON:0003059,2.76e-09,71;UBERON:0007282,2.76e-09,71;UBERON:0004290,2.76e-09,71;UBERON:0009618,2.76e-09,71;UBERON:0007524,3.03e-09,73;UBERON:0003102,4.72e-09,99;UBERON:0003077,6.53e-09,72;UBERON:0007285,6.53e-09,72;UBERON:0005631,8.15e-09,14;UBERON:0000158,8.15e-09,14;UBERON:0002097,8.76e-09,41;UBERON:0000486,1.54e-08,83;UBERON:0007503,9.46e-08,78;UBERON:0001134,3.40e-07,62;UBERON:0002036,3.40e-07,62;UBERON:0003082,3.40e-07,62;UBERON:0002385,5.30e-07,64;UBERON:0001015,5.30e-07,64;UBERON:0000383,5.30e-07,64 | |||
|phase1_expression=8.3572054464456,11.1332272423311,15.6459388546528,16.0117277365009,14.7497161161005,14.8297549097063,5.06599756336621,2.52687949370732,4.44015567939725,4.91467873003018,0.697801167972428,8.95609625733706,6.33040747748289,3.96052329472149,5.96515276310248,0,0,2.92124036154949,1.46379839637152,3.44738962615006,9.58803248847989,2.19418305034661,0.286235987131057,0.958120975510189,4.14290710662849,0,0,0,0,0,0.154816123316076,0.919421224478927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.6284119788377,2.68280343881454,4.2194645408365,0,2.50668955317945,1.73815822752988,0,0.486634870302636,9.35894689924272,14.6341402325292,17.4791223529321,2.0956652079634,0,0,0,0,0,0,0,0,0,0.860234595106124,0.347140501607594,1.13061588384802,0.838998872419812,0.550236083880135,0.417989933073621,0,1.06729878806013,0.66944122552934,0,0,0,0.367663080345869,2.43042584364528,0.982297011124877,0.44905874525234,1.35133776579987,0,0,0,0,0,0.436094052142534,21.866765874594,4.68532893158945,8.07696002960635,7.74458876021797,2.83734705758686,3.36406560085384,2.1349799145941,1.2333377420858,12.1372303805909,3.77189881795127,2.28846664358842,11.8058793563046,20.1661573568,7.96692868234909,10.9256026890612,0.570471821544449,8.81747215255626,7.51580791320095,10.1979954951923,6.03938468819669,4.49139176760765,2.57952066354713,7.64610780700664,13.0680314301026,12.1160795346493,15.4727431529464,5.74894513452991,3.53505839303539,4.62938523526267,19.9486163148612,11.4134181429018,16.243853177348,11.8688066536211,3.40296549480063,12.3778848625315,20.5015093265825,23.9483048310305,10.5031883629541,18.2402976752037,13.6549486224183,14.7032316501956,4.38818463827292,9.45138950063627,11.107086066741,19.974828005379,8.08230284094059,9.23024940543197,7.7579115635283,5.59549954624609,0.193260853163297,0.818238361772504,0.286804595389004,0.243947412259191,0.530119073285941,0.929551542956147,0.518305275076852,0.252320850875628,1.45990943630332,6.25798129319264,44.3836247353091,2.76269842704961,43.650585235006,21.6563844500876,4.49565840151407,6.06904884281166,6.26628677697053,4.63234685476055,7.62578054323422,5.69449485866632,4.44943316928543,6.67152981426177,7.31019598198142,0,4.20725321410337,2.4694440679884,11.7606969108434,0,0,1.18157981336281,0,2.58275720940538,3.60292401626904,0.548751427043128,0,0,0.277765335475589,5.86454949558584,0,12.9898207822746,0.34779121492523,15.8501737218359,0,0,0,0,0,0,0,0,0.93733833986777,2.35174979478403,0.141775097242386,0.626909658919938,1.16253575405585,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0.205654985406647,0,0,33.3029320505721,30.9531648871629,40.4093954873435,5.55868377758444,0,5.071816515336,15.9562869950922,26.0018592278415,3.85811061393213,5.67396528093113,3.46348832720929,6.43400971461664,1.08524321078289,1.64648067356154,1.95441710576241,4.26470338491055,1.58390374586686,2.71295439353627,0.871533458600294,3.69900067373611,0,0,0,16.2944901734276,12.6348129417525,9.98458335285029,12.740754986747,6.98619496671304,10.206474904674,0,0,0,0.128343036279748,1.77866236955724,0,0,0,0,0,0,0,5.39842563564216,7.50255781589516,7.32415563989286,15.1818728917489,14.6311770813673,14.508622183122,12.1827071592422,6.62081419400982,4.5481500811197,3.10419213877515,8.63493278096067,8.48098175291834,13.1194257846805,3.72022199179207,8.23544217146054,0,0,0,4.85004114314015,13.3148351608398,8.16453791990137,13.8940372378515,5.98501695823444,11.507063871756,20.3741247316565,10.7458522304008,9.16867350518563,8.90508398669946,5.70575867069826,5.50441348470694,2.62806899244189,1.03850885836724,4.29978400301849,2.77976734060731,1.00253235151642,0.276242966807689,1.37777337797528,2.54927635209404,4.19598127870157,1.80479845162965,1.15523005656622,1.56869953835371,0,0.949964660035881,0,0.170093705276516,3.88648648983851,0,1.62567862526312,0,0.509752546090077,0.831076008928724,0.447749509444357,0,0,0,0.984043937099117,1.95227036798582,8.44936295511323,0.0915694648183434,0,2.29706215198469,0,3.21367859688319,3.0934629853479,6.932187770159,5.2191249406884,8.1323577765873,6.76747542670124,8.41096824702525,10.7385550544287,8.90320356467373,0.495854746082934,2.11409074101617,1.14851441245126,0.6069466851333,5.57814659156743,9.75918275174984,1.3940745403212,0.616067160352178,1.06461206063404,2.60979897622522,1.66791797193528,0.715624433709956,17.1192849905447,11.3896592898741,14.6785249321345,3.07077349573601,14.5499255931533,2.22742273548156,0,6.29553601541602,8.5106479218177,7.7756185548153,0.202182481573316,1.58510321173008,0.842516912477962,5.36397112998549,0.731140468893853,0,3.95849743083159,4.24216295861138,1.13008116620243,1.10273068709225,1.32687795048244,3.06915619677634,2.89387767133344,7.21484227251296,1.01455188481352,1.8589409885985,0.563391205064483,4.15892921391749,9.43190793725963,1.426684205925,1.41904425628239,10.1331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| |||
|short_description=p5@VGLL3 | |||
}} |
Latest revision as of 18:23, 19 September 2015
Short description: | p5@VGLL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_VGLL3_5end |
Coexpression cluster: | C2757_bronchogenic_placenta_small_oral_bone_Hair_chorionic |
Association with transcript: | -151bp_to_ENST00000494229_5end |
EntrezGene: | VGLL3 |
HGNC: | 24327 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.86e-23 | 76 |
skin fibroblast | 1.57e-11 | 23 |
extraembryonic cell | 7.34e-09 | 19 |
fat cell | 3.37e-07 | 15 |
muscle precursor cell | 4.52e-07 | 58 |
myoblast | 4.52e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.52e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
organ component layer | 4.36e-11 | 66 |
extraembryonic structure | 1.00e-10 | 24 |
integument | 7.66e-10 | 46 |
integumental system | 7.66e-10 | 46 |
somite | 2.76e-09 | 71 |
presomitic mesoderm | 2.76e-09 | 71 |
presumptive segmental plate | 2.76e-09 | 71 |
dermomyotome | 2.76e-09 | 71 |
trunk paraxial mesoderm | 2.76e-09 | 71 |
dense mesenchyme tissue | 3.03e-09 | 73 |
surface structure | 4.72e-09 | 99 |
paraxial mesoderm | 6.53e-09 | 72 |
presumptive paraxial mesoderm | 6.53e-09 | 72 |
extraembryonic membrane | 8.15e-09 | 14 |
membranous layer | 8.15e-09 | 14 |
skin of body | 8.76e-09 | 41 |
multilaminar epithelium | 1.54e-08 | 83 |
epithelial vesicle | 9.46e-08 | 78 |
skeletal muscle tissue | 3.40e-07 | 62 |
striated muscle tissue | 3.40e-07 | 62 |
myotome | 3.40e-07 | 62 |
muscle tissue | 5.30e-07 | 64 |
musculature | 5.30e-07 | 64 |
musculature of body | 5.30e-07 | 64 |