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FFCP PHASE1:Hg19::chr5:112849573..112849584,+: Difference between revisions

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{{FFCP
{{FFCP
|id=chr5:112849573..112849584,+
|DHSsupport=supported 
|short_description=p5@YTHDC2
|DPIdataset=robust
|description=CAGE_peak_5_at_YTHDC2_5end
|association_with_transcript=163bp_to_uc003kqn.2,uc010jce.1,uc010jcf.1_5end
|EntrezGene=64848
|EntrezGene=64848
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding
|HGNC=24721
|HGNC=24721
|TSSclassifier=strong
|UniProt=
|UniProt=
|association_with_transcript=163bp_to_uc003kqn.2,uc010jce.1,uc010jcf.1_5end
|cluster_id=chr5:112849573..112849584,+
|coexpression_cluster_id=C7
|description=CAGE_peak_5_at_YTHDC2_5end
|id=chr5:112849573..112849584,+
|ontology_enrichment_celltype=CL:0002057!2.84e-25!42;CL:0000860!3.02e-24!45;CL:0000766!3.76e-21!76;CL:0002009!3.80e-19!65;CL:0000557!3.10e-18!71;CL:0002194!9.57e-18!63;CL:0000576!9.57e-18!63;CL:0000040!9.57e-18!63;CL:0000559!9.57e-18!63;CL:0000839!2.27e-16!70;CL:0000738!1.68e-12!140;CL:0000763!2.36e-11!112;CL:0000049!2.36e-11!112;CL:0002031!1.71e-09!124;CL:0002087!3.54e-09!119;CL:0000037!1.59e-07!172;CL:0000566!1.59e-07!172;CL:0000988!4.60e-07!182;CL:0002032!6.02e-07!165;CL:0000837!6.02e-07!165
|ontology_enrichment_celltype_v019=CL:0000860;3.59e-88;33!CL:0002057;3.59e-88;33!CL:0000473;4.98e-61;39!CL:0000234;4.98e-61;39!CL:0000576;1.43e-50;48!CL:0000766;9.24e-30;69!CL:0000763;3.83e-14;100!CL:0002087;1.81e-12;104!CL:0000738;1.90e-10;136!CL:0001014;5.58e-09;2!CL:0001016;5.58e-09;2
|ontology_enrichment_celltype_v019_2=CL:0000860,4.61e-92,42;CL:0002057,4.61e-92,42;CL:0000473,1.40e-79,48;CL:0000234,1.40e-79,48;CL:0002009,3.55e-68,61;CL:0002194,4.22e-62,59;CL:0000576,4.22e-62,59;CL:0000040,4.22e-62,59;CL:0000559,4.22e-62,59;CL:0000557,1.93e-61,67;CL:0000766,9.52e-61,72;CL:0000839,8.53e-55,66;CL:0000763,4.94e-43,108;CL:0000049,4.94e-43,108;CL:0000738,1.87e-34,136;CL:0002031,5.41e-33,120;CL:0002087,2.44e-30,115;CL:0002032,8.84e-28,161;CL:0000837,8.84e-28,161;CL:0000037,2.89e-26,168;CL:0000988,4.09e-26,177;CL:0000134,9.61e-12,354;CL:0002320,2.47e-11,361;CL:0000219,6.82e-10,386;CL:0001014,4.47e-09,2;CL:0001016,4.47e-09,2;CL:0000048,7.93e-09,427;CL:0000723,1.42e-08,433;CL:0000034,3.04e-08,441
|ontology_enrichment_development_v019=CL:0002057;6.81e-67;42!CL:0000049;6.22e-12;108
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0001474!8.80e-16!86;UBERON:0002371!1.06e-15!80;UBERON:0002405!1.95e-14!115;UBERON:0002390!5.69e-13!102;UBERON:0003061!5.69e-13!102;UBERON:0004765!6.59e-13!101;UBERON:0001434!6.59e-13!101;UBERON:0002193!3.40e-12!112
|ontology_enrichment_uberon_v019=
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.64e-53,76;UBERON:0001474,7.34e-49,82;UBERON:0004765,7.57e-44,90;UBERON:0002390,2.66e-42,98;UBERON:0003061,2.66e-42,98;UBERON:0002405,3.46e-42,93;UBERON:0001434,1.07e-38,100;UBERON:0002193,1.17e-37,108;UBERON:0002204,1.75e-21,167;UBERON:0003081,1.02e-18,203;UBERON:0002384,8.93e-11,371;UBERON:0000926,1.19e-10,315;UBERON:0004120,1.19e-10,315;UBERON:0006603,1.19e-10,315
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|short_description=p5@YTHDC2
}}
}}

Latest revision as of 18:57, 19 September 2015

Short description:p5@YTHDC2
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): Yes
DHS support(Yes/No): Yes
Description: CAGE_peak_5_at_YTHDC2_5end
Coexpression cluster:C7_CD14_Eosinophils_Neutrophils_Smooth_Basophils_Macrophage_Mast
Association with transcript: 163bp_to_uc003kqn.2, uc010jce.1, uc010jcf.1_5end
EntrezGene:YTHDC2
HGNC: 24721
UniProt: NA
Genome view:ZENBU


View on UCSC genome browser

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CAGE Expression



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  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

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