FFCP PHASE1:Hg19::chr3:120114721..120114737,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=406975 | |EntrezGene=406975 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=31570 | |HGNC=31570 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-145bp_to_NR_029584_5end | |association_with_transcript=-145bp_to_NR_029584_5end | ||
|cluster_id=chr3:120114721..120114737,- | |||
|coexpression_cluster_id=C605 | |||
|description=CAGE_peak_1_at_MIR198_5end | |description=CAGE_peak_1_at_MIR198_5end | ||
|id=chr3:120114721..120114737,- | |id=chr3:120114721..120114737,- | ||
|ontology_enrichment_celltype=CL:0000055!7.51e-32!180;CL:0000057!9.06e-18!75;CL:0000680!1.15e-12!57;CL:0000056!1.15e-12!57;CL:0000355!1.15e-12!57;CL:0000393!4.15e-12!60;CL:0000211!4.15e-12!60;CL:0000187!9.05e-12!54;CL:0000222!6.17e-11!119;CL:0000183!1.12e-10!59;CL:0000192!1.64e-09!42;CL:0000514!1.64e-09!42;CL:0002620!3.61e-09!23;CL:0002334!6.86e-08!12;CL:0000144!9.13e-08!625;CL:0000359!4.58e-07!32;CL:0000136!8.47e-07!15 | |ontology_enrichment_celltype=CL:0000055!7.51e-32!180;CL:0000057!9.06e-18!75;CL:0000680!1.15e-12!57;CL:0000056!1.15e-12!57;CL:0000355!1.15e-12!57;CL:0000393!4.15e-12!60;CL:0000211!4.15e-12!60;CL:0000187!9.05e-12!54;CL:0000222!6.17e-11!119;CL:0000183!1.12e-10!59;CL:0000192!1.64e-09!42;CL:0000514!1.64e-09!42;CL:0002620!3.61e-09!23;CL:0002334!6.86e-08!12;CL:0000144!9.13e-08!625;CL:0000359!4.58e-07!32;CL:0000136!8.47e-07!15 | ||
|ontology_enrichment_celltype_v019=CL:0000134;7.73e-13;55!CL:0000723;3.29e-11;61!CL:0000048;6.39e-11;58!CL:0002334;1.05e-10;12!CL:0000349;1.86e-09;19!CL:0002620;6.76e-09;23!CL:0002320;1.20e-08;188!CL:0000034;2.16e-08;69!CL:0000057;4.52e-08;73!CL:0000499;2.81e-07;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.06e-20,76;CL:0000048,1.70e-15,427;CL:0000723,1.14e-14,433;CL:0000034,1.28e-13,441;CL:0002334,1.02e-10,12;CL:0000349,1.45e-09,19;CL:0000680,2.57e-09,58;CL:0000056,2.57e-09,58;CL:0000355,2.57e-09,58;CL:0002320,3.00e-09,361;CL:0002620,8.20e-09,23;CL:0000187,1.26e-08,55;CL:0000393,3.13e-08,61;CL:0000211,3.13e-08,61;CL:0000134,3.35e-08,354;CL:0000136,2.70e-07,15;CL:0000499,4.24e-07,28 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.77e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.31e-16!83;UBERON:0002329!5.31e-16!83;UBERON:0003077!5.31e-16!83;UBERON:0003059!5.31e-16!83;UBERON:0007282!5.31e-16!83;UBERON:0009618!5.31e-16!83;UBERON:0007285!5.31e-16!83;UBERON:0004290!2.11e-13!70;UBERON:0000486!8.00e-13!82;UBERON:0002385!2.10e-12!63;UBERON:0001015!2.10e-12!63;UBERON:0000383!2.10e-12!63;UBERON:0001134!2.77e-12!61;UBERON:0002036!2.77e-12!61;UBERON:0003082!2.77e-12!61;UBERON:0005256!5.00e-09!143;UBERON:0004872!8.78e-09!84;UBERON:0004923!4.44e-08!57;UBERON:0002049!7.66e-08!79;UBERON:0007798!7.66e-08!79;UBERON:0002199!7.70e-08!45;UBERON:0002416!7.70e-08!45;UBERON:0001637!1.20e-07!42;UBERON:0003509!1.20e-07!42;UBERON:0004572!1.20e-07!42;UBERON:0002100!1.41e-07!216;UBERON:0000478!7.15e-07!24;UBERON:0000468!7.99e-07!659 | |ontology_enrichment_uberon=UBERON:0000914!5.31e-16!83;UBERON:0002329!5.31e-16!83;UBERON:0003077!5.31e-16!83;UBERON:0003059!5.31e-16!83;UBERON:0007282!5.31e-16!83;UBERON:0009618!5.31e-16!83;UBERON:0007285!5.31e-16!83;UBERON:0004290!2.11e-13!70;UBERON:0000486!8.00e-13!82;UBERON:0002385!2.10e-12!63;UBERON:0001015!2.10e-12!63;UBERON:0000383!2.10e-12!63;UBERON:0001134!2.77e-12!61;UBERON:0002036!2.77e-12!61;UBERON:0003082!2.77e-12!61;UBERON:0005256!5.00e-09!143;UBERON:0004872!8.78e-09!84;UBERON:0004923!4.44e-08!57;UBERON:0002049!7.66e-08!79;UBERON:0007798!7.66e-08!79;UBERON:0002199!7.70e-08!45;UBERON:0002416!7.70e-08!45;UBERON:0001637!1.20e-07!42;UBERON:0003509!1.20e-07!42;UBERON:0004572!1.20e-07!42;UBERON:0002100!1.41e-07!216;UBERON:0000478!7.15e-07!24;UBERON:0000468!7.99e-07!659 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.37e-08;198!UBERON:0004457;8.44e-08;9!UBERON:0000042;8.44e-08;9!UBERON:0000478;1.58e-07;24!UBERON:0001013;1.64e-07;14!UBERON:0003688;6.04e-07;6!UBERON:0002358;6.04e-07;6!UBERON:0003684;6.04e-07;6!UBERON:0001178;6.04e-07;6!UBERON:0002199;6.05e-07;46!UBERON:0002416;6.05e-07;46!UBERON:0002385;7.73e-07;31!UBERON:0001015;7.73e-07;31!UBERON:0000383;7.73e-07;31!UBERON:0005631;9.17e-07;10!UBERON:0000158;9.17e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,6.80e-10,73;UBERON:0002199,1.12e-09,46;UBERON:0002416,1.12e-09,46;UBERON:0002384,1.23e-09,371;UBERON:0002329,1.46e-09,71;UBERON:0003059,1.46e-09,71;UBERON:0007282,1.46e-09,71;UBERON:0004290,1.46e-09,71;UBERON:0009618,1.46e-09,71;UBERON:0002385,1.58e-09,64;UBERON:0001015,1.58e-09,64;UBERON:0000383,1.58e-09,64;UBERON:0001134,1.64e-09,62;UBERON:0002036,1.64e-09,62;UBERON:0003082,1.64e-09,62;UBERON:0003077,2.84e-09,72;UBERON:0007285,2.84e-09,72;UBERON:0007503,2.88e-08,78;UBERON:0000486,4.32e-08,83;UBERON:0000478,1.33e-07,24;UBERON:0001013,1.96e-07,14;UBERON:0003688,4.76e-07,6;UBERON:0002358,4.76e-07,6;UBERON:0003684,4.76e-07,6;UBERON:0001178,4.76e-07,6;UBERON:0002097,4.98e-07,41;UBERON:0000926,6.35e-07,315;UBERON:0004120,6.35e-07,315;UBERON:0006603,6.35e-07,315 | |||
|phase1_expression=4.54195948176392,9.42042305120326,3.38290569830331,25.0183245882826,13.8557939272459,21.8084631025092,10.1319951267324,1.26343974685366,4.44015567939725,0.737201809504527,0,0.436882744260345,1.84636884759917,1.8564952944007,2.98257638155124,6.72325146451775,1.80808358407193,2.19093027116212,3.90346239032406,0.984968464614303,0.408001382488506,0.940364164434263,0.572471974262113,0.958120975510189,0.627713197974014,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,0.639312809217652,6.86734389530676,7.52006865953834,13.4707262633566,0.795285947051099,5.35298357332899,1.22895262313288,1.55210578223795,1.22968699970376,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0.838998872419812,1.10047216776027,0.626984899610432,0.258416759169329,0.35576626268671,0.66944122552934,0,0,0.976248230192678,0.367663080345869,3.24056779152704,0.446498641420399,0,0.112611480483322,0,0,0.366403487860815,0,0,0,3.97577561356255,2.5326102332916,1.45650098894541,10.6129549677061,3.19201543978521,1.68203280042692,2.1349799145941,3.7000132262574,0,1.0776853765575,0.326923806226917,0.908144565869588,3.45705554687999,0,0.936480230490962,1.71141546463335,1.19558944441441,0.352303495931295,0.485618833104395,0.421352420106746,0.61246251376468,0.859840221182376,0.413303124703062,2.37600571456411,4.45080472701402,0.910161361938026,0,0.673344455816265,1.00094815897571,0,1.75591048352335,6.43624371177941,3.75595147266492,2.04177929688038,5.02290979928813,5.97960688691989,4.66250182551036,6.30191301777245,1.64884046781502,7.21393512127762,2.04728541964749,1.35021065793013,2.24105111870757,2.77677151668526,3.12969655383818,2.58633690910099,8.52023022039874,1.5112814734146,1.52604533079439,0,0.272746120590835,0,0.365921118388786,0.397589304964456,0.464775771478074,0.932949495138334,0.756962552626885,0.72995471815166,1.56449532329816,6.43240938192885,0,5.10804720835177,3.60939740834793,0.118306800039844,0.168584690078102,0.482022059766964,0.330881918197182,0,0,0.269662616320329,0.392442930250692,0,0,0,0,1.47008711385542,0,0,0,0,0,1.02940686179115,0.109750285408626,0,0.100528972411631,0,0,0,4.3299402607582,0.34779121492523,0.234817388471643,0.721832238805369,0,0.761016608938393,0,0,0,0,0,0.93733833986777,0.335964256397719,0.425325291727159,0.0895585227028483,0.290633938513962,0,0,0,0.207328115540772,0,0,0.063497894292169,0,0,0,0.102827492703324,0.300343057843917,0.285826432630578,0.336393253036082,0,0.7333828582095,1.80980402060889,0,4.22651376278,2.12750493267896,2.08014873822732,0.257207374262142,1.41849132023278,0.266422179016099,2.85955987316295,1.62786481617433,0.823240336780769,0,3.19852753868291,5.543663110534,2.41151501647669,0.871533458600294,2.99918973546171,0,0,0,4.79249710983165,6.89171615004683,0,3.61953266668948,2.67119219315498,0.358121926479791,0,0,0,0,0,0,0,0.167516265334349,1.27587750330633,0,0,0,1.8403723757871,2.00068208423871,1.62759014219841,4.36738809214695,25.1584874203998,4.25796520591624,2.92853537481783,0.601892199455438,0,2.0694614258501,1.99267679560631,1.10621501125022,1.39013783148933,0.195801157462741,0.343143423810856,0,0,0,0.303127571446259,1.66435439510497,2.11673205330776,5.70647957983187,2.30192959932094,9.82310330515758,2.94720043288112,3.58195074346692,6.91671860917512,11.8734453155993,3.54682295746108,2.66342587969691,1.14978018419333,2.59627214591811,3.1376802184189,0,0.40101294060657,0.0920809889358963,2.18147451512753,3.09554985611419,5.11385218341754,0,0.231046011313244,0,0,0.844413031143006,0,0.510281115829547,0,1.54227252690289,0,0,0,0,0,0,0,0.769350375349168,0.984043937099117,0.325378394664303,0.412164046590889,0.27470839445503,0.41254749960294,0,0,4.82051789532479,1.25671933779759,1.23238893691716,1.07452572308291,0.827019434907183,1.93356440762893,2.46528379654188,1.10794615640931,1.78064071293475,0.826424576804891,0.768760269460425,0.255225424989168,0,1.85938219718914,5.66662224295152,0.6970372701606,0.924100740528266,0.532306030317022,0.869932992075073,0.37064843820784,0.572499546967965,1.116475108079,1.2655176988749,3.8126038784765,0.255897791311334,2.1396949401696,0.318203247925937,0.78494864019923,1.79872457583315,4.11805544604082,1.41374882814824,0,0,1.26377536871694,0.975267478179181,6.09283724078211,3.16950440270266,1.09199929126389,2.96951407102797,0,0.551365343546124,2.65375590096488,0.876901770507525,1.15755106853338,1.9676842561399,1.01455188481352,1.8589409885985,1.12678241012897,0.717056761020258,2.65272410735427,1.07001315444375,0.709522128141196,12.8775657531575,12.8425008254362,0.379473173765715,0,0,0,0,0.376575203107117,0,0,0.886860307073351,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,3.58116727106535,2.96964680832639,3.37876772309155,0,0,0,0,0,1.5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| ||
|short_description=p1@MIR198 | |short_description=p1@MIR198 | ||
}} | }} |
Latest revision as of 21:47, 19 September 2015
Short description: | p1@MIR198 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_MIR198_5end |
Coexpression cluster: | C605_hepatic_normal_osteoclastoma_tenocyte_neurofibroma_Ewing_mesothelioma |
Association with transcript: | -145bp_to_NR_029584_5end |
EntrezGene: | MIR198 |
HGNC: | 31570 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.06e-20 | 76 |
multi fate stem cell | 1.70e-15 | 427 |
somatic stem cell | 1.14e-14 | 433 |
stem cell | 1.28e-13 | 441 |
preadipocyte | 1.02e-10 | 12 |
extraembryonic cell | 1.45e-09 | 19 |
muscle precursor cell | 2.57e-09 | 58 |
myoblast | 2.57e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.57e-09 | 58 |
connective tissue cell | 3.00e-09 | 361 |
skin fibroblast | 8.20e-09 | 23 |
muscle cell | 1.26e-08 | 55 |
electrically responsive cell | 3.13e-08 | 61 |
electrically active cell | 3.13e-08 | 61 |
mesenchymal cell | 3.35e-08 | 354 |
fat cell | 2.70e-07 | 15 |
stromal cell | 4.24e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 6.80e-10 | 73 |
integument | 1.12e-09 | 46 |
integumental system | 1.12e-09 | 46 |
connective tissue | 1.23e-09 | 371 |
somite | 1.46e-09 | 71 |
presomitic mesoderm | 1.46e-09 | 71 |
presumptive segmental plate | 1.46e-09 | 71 |
dermomyotome | 1.46e-09 | 71 |
trunk paraxial mesoderm | 1.46e-09 | 71 |
muscle tissue | 1.58e-09 | 64 |
musculature | 1.58e-09 | 64 |
musculature of body | 1.58e-09 | 64 |
skeletal muscle tissue | 1.64e-09 | 62 |
striated muscle tissue | 1.64e-09 | 62 |
myotome | 1.64e-09 | 62 |
paraxial mesoderm | 2.84e-09 | 72 |
presumptive paraxial mesoderm | 2.84e-09 | 72 |
epithelial vesicle | 2.88e-08 | 78 |
multilaminar epithelium | 4.32e-08 | 83 |
extraembryonic structure | 1.33e-07 | 24 |
adipose tissue | 1.96e-07 | 14 |
omentum | 4.76e-07 | 6 |
peritoneum | 4.76e-07 | 6 |
abdominal cavity | 4.76e-07 | 6 |
visceral peritoneum | 4.76e-07 | 6 |
skin of body | 4.98e-07 | 41 |
mesoderm | 6.35e-07 | 315 |
mesoderm-derived structure | 6.35e-07 | 315 |
presumptive mesoderm | 6.35e-07 | 315 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.77e-07 | 14 |