FFCP PHASE1:Hg19::chr19:55581103..55581143,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=112724 | |EntrezGene=112724 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19978 | |HGNC=19978 | ||
|TSSclassifier=strong | |||
|UniProt=B3KVA3,Q8NBN7 | |UniProt=B3KVA3,Q8NBN7 | ||
|association_with_transcript=-189bp_to_ENST00000396247,NM_138412,uc002qip.2_5end | |association_with_transcript=-189bp_to_ENST00000396247,NM_138412,uc002qip.2_5end | ||
|cluster_id=chr19:55581103..55581143,- | |||
|coexpression_cluster_id=C120 | |||
|description=CAGE_peak_4_at_RDH13_5end | |description=CAGE_peak_4_at_RDH13_5end | ||
|id=chr19:55581103..55581143,- | |id=chr19:55581103..55581143,- | ||
|ontology_enrichment_celltype=CL:0000223!1.11e-14!59;CL:0002076!4.98e-14!43;CL:0000066!1.00e-12!254;CL:0002251!4.14e-10!21;CL:0000083!1.65e-07!4 | |ontology_enrichment_celltype=CL:0000223!1.11e-14!59;CL:0002076!4.98e-14!43;CL:0000066!1.00e-12!254;CL:0002251!4.14e-10!21;CL:0000083!1.65e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0001014;1.37e-15;2!CL:0001016;1.37e-15;2!CL:0002537;9.06e-07;5!CL:0000453;9.72e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0001014,1.33e-15,2;CL:0001016,1.33e-15,2;CL:0002537,9.07e-07,5;CL:0000453,9.60e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0000358;1.46e-08;1!UBERON:0009143;3.69e-08;1!UBERON:0003124;3.69e-08;1 | |||
|ontology_enrichment_disease=DOID:1749!1.42e-17!14;DOID:305!1.33e-15!106;DOID:0050687!8.71e-10!143;DOID:299!2.54e-08!25;DOID:1793!1.65e-07!4 | |||
|ontology_enrichment_disease_v019=DOID:3151;3.69e-08;1!DOID:3149;3.69e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,7.16e-08,1;DOID:3149,7.16e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.31e-18!169;UBERON:0000925!1.31e-18!169;UBERON:0006595!1.31e-18!169;UBERON:0000077!5.55e-18!130;UBERON:0001007!2.97e-15!155;UBERON:0001555!2.97e-15!155;UBERON:0007026!2.97e-15!155;UBERON:0000161!4.57e-15!35;UBERON:0004921!1.07e-14!129;UBERON:0004185!1.07e-14!129;UBERON:0001041!1.14e-10!98;UBERON:0000344!3.21e-09!12;UBERON:0000166!5.23e-09!21;UBERON:0001046!2.96e-08!19;UBERON:0001004!3.30e-08!72;UBERON:0000162!1.49e-07!14;UBERON:0001353!1.49e-07!14;UBERON:0000163!1.49e-07!14;UBERON:0006866!1.49e-07!14;UBERON:0000164!1.49e-07!14;UBERON:0000931!1.49e-07!14;UBERON:0000165!2.79e-07!28;UBERON:0000930!2.79e-07!28;UBERON:0000466!4.20e-07!126;UBERON:0002294!4.33e-07!7;UBERON:0001173!4.33e-07!7;UBERON:0004912!4.33e-07!7;UBERON:0000464!5.84e-07!104;UBERON:0004122!5.93e-07!15;UBERON:0001723!7.16e-07!3;UBERON:0001033!7.16e-07!3;UBERON:0010056!7.16e-07!3;UBERON:0003102!7.22e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0001723;4.71e-10;3!UBERON:0001033;4.71e-10;3!UBERON:0002372;3.69e-08;1!UBERON:0004913;3.69e-08;1!UBERON:0003703;3.69e-08;1!UBERON:0001961;3.69e-08;1!UBERON:0001744;3.69e-08;1!UBERON:0001042;3.69e-08;1!UBERON:0001735;3.69e-08;1!UBERON:0001174;3.69e-08;1!UBERON:0004914;3.69e-08;1!UBERON:0000478;3.31e-07;24!UBERON:0005631;5.75e-07;10!UBERON:0000158;5.75e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,8.55e-10,3;UBERON:0001033,8.55e-10,3;UBERON:0010056,8.55e-10,3;UBERON:0004913,2.17e-08,1;UBERON:0003703,2.17e-08,1;UBERON:0001174,2.17e-08,1;UBERON:0004914,2.17e-08,1;UBERON:0005631,2.78e-08,14;UBERON:0000158,2.78e-08,14;UBERON:0002372,3.83e-08,1;UBERON:0001961,3.83e-08,1;UBERON:0001744,3.83e-08,1;UBERON:0001735,3.83e-08,1;UBERON:0000478,3.21e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,1.1240175325762,0.201057944823262,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,2.30202472339741,0,0,0,0.451199612907412,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98818933778395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,1.0115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192444225451024,0.670302275535787,1.08890984861323,2.54188262097304,0.43050537267123,0,1.33029046061003,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.4147132063599,0.296964680832639,11.9792673818701,0,0,0,0,0.211125408127993,0,0,0,0,0,0,0.449341755736634,0.358042349351218,0,0.394573622547734,0,0,0,0,0,0,0.524759999977174,0,0.341380344856499,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,1.11538995422883,0.769502585037971,0,0,0.807818799687949,0,1.27600463892768,0,0,0,0,0,0,0,0,1.3282761290693,0,0.210998064528027,0.163232808159148,0.848118428603645,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391969589657511,0.261177619741208,0,0,0,0,0,1.55182426381471,0,0.225980740780532,0,0,0,0.782205530939212,0,0.213452994739353,0.19980960958213,0.144090417154106,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0,0,2.4747128070665,25.5354645004123,0,1.0063040627978,0,0,0,0,0.383830394638891,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197611631897944,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.845248493434508,0,0,0,0,0,1.53867458491389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0,0.733714394086716,0.231051332300676,0,0,0,0,0,0,0.523813388962845,0,1.47856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1531308121143,0,0,0.0679697329768317,0,0.236387681767936,0.444925607568277,0.078493092850514,0,0.280272163313789,0,0,0,0,0,0,0,0,0.207216164163037,0.17071847709395,2.07377898544228,0.430227358820278,0,0,0,0.4582137370881,0,0,0.335566295393377,0.490751168076215,0.243835849964539,0,0,0,0.971421986118279,0,0,0,0,0,0.754814217833368,0.0771741581079447,0,0,0.245148321753905,0,0,0,0,0,0,0,0,0.892769693028288,1.05868461514708,0.481448200135009,1.46067277649303,0,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0,0,0.639701945702943,0.476128862927481,0.0645889098360061,0,0,0,0,1.08858373948481,1.02669990325584,1.14498490124799,1.29099969706817,0,0.488419611665847,0,0,0.0898252021065869,2.34640942403454,0,0,0.665756774185513,0,0 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| ||
|short_description=p4@RDH13 | |short_description=p4@RDH13 | ||
}} | }} |
Latest revision as of 23:35, 19 September 2015
Short description: | p4@RDH13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RDH13_5end |
Coexpression cluster: | C120_immature_salivary_tongue_skin_cervical_CD14_CD34 |
Association with transcript: | -189bp_to_ENST00000396247, NM_138412, uc002qip.2_5end |
EntrezGene: | RDH13 |
HGNC: | 19978 |
UniProt: | B3KVA3Q8NBN7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 1.33e-15 | 2 |
immature CD1a-positive Langerhans cell | 1.33e-15 | 2 |
amnion mesenchymal stem cell | 9.07e-07 | 5 |
Langerhans cell | 9.60e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
tongue | 8.55e-10 | 3 |
gustatory system | 8.55e-10 | 3 |
future tongue | 8.55e-10 | 3 |
hepatopancreatic ampulla | 2.17e-08 | 1 |
extrahepatic bile duct | 2.17e-08 | 1 |
common bile duct | 2.17e-08 | 1 |
duodenal papilla | 2.17e-08 | 1 |
extraembryonic membrane | 2.78e-08 | 14 |
membranous layer | 2.78e-08 | 14 |
tonsil | 3.83e-08 | 1 |
mucosa-associated lymphoid tissue | 3.83e-08 | 1 |
lymphoid tissue | 3.83e-08 | 1 |
tonsillar ring | 3.83e-08 | 1 |
extraembryonic structure | 3.21e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 7.16e-08 | 1 |
keratoacanthoma | 7.16e-08 | 1 |