FFCP PHASE1:Hg19::chr12:6644397..6644439,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2597 | |EntrezGene=2597 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4141 | |HGNC=4141 | ||
|TSSclassifier=strong | |||
|UniProt=E7EUT4 | |UniProt=E7EUT4 | ||
|association_with_transcript=-28bp_to_ENST00000396858,uc001qov.1_5end | |association_with_transcript=-28bp_to_ENST00000396858,uc001qov.1_5end | ||
|cluster_id=chr12:6644397..6644439,+ | |||
|coexpression_cluster_id=C1 | |coexpression_cluster_id=C1 | ||
|description=CAGE_peak_6_at_GAPDH_5end | |description=CAGE_peak_6_at_GAPDH_5end | ||
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|ontology_enrichment_celltype=CL:0002321!8.78e-08!248;CL:0000220!3.14e-07!246;CL:0000359!8.01e-07!32;CL:0000192!8.42e-07!42;CL:0000514!8.42e-07!42 | |ontology_enrichment_celltype=CL:0002321!8.78e-08!248;CL:0000220!3.14e-07!246;CL:0000359!8.01e-07!32;CL:0000192!8.42e-07!42;CL:0000514!8.42e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.10e-10;5!CL:0000359;1.38e-09;32!CL:0000540;1.49e-08;6!CL:0000404;1.49e-08;6!CL:0002594;2.49e-08;4 | |ontology_enrichment_celltype_v019=CL:0002322;1.10e-10;5!CL:0000359;1.38e-09;32!CL:0000540;1.49e-08;6!CL:0000404;1.49e-08;6!CL:0002594;2.49e-08;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,6.29e-11,5;CL:0000359,2.63e-10,32;CL:0000393,1.23e-08,61;CL:0000211,1.23e-08,61;CL:0000047,1.54e-08,8;CL:0000540,1.85e-08,6;CL:0000031,1.85e-08,6;CL:0000404,1.85e-08,6;CL:0002594,2.11e-08,4;CL:0000192,1.16e-07,43;CL:0000514,1.16e-07,43;CL:0000148,5.87e-07,10;CL:0000541,5.87e-07,10 | |||
|ontology_enrichment_development_v019=CL:0000031;1.49e-08;6 | |ontology_enrichment_development_v019=CL:0000031;1.49e-08;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:0060072;3.20e-08;4!DOID:0060084;8.75e-07;3!DOID:127;8.75e-07;3 | |ontology_enrichment_disease_v019=DOID:0060072;3.20e-08;4!DOID:0060084;8.75e-07;3!DOID:127;8.75e-07;3 | ||
|ontology_enrichment_disease_v019_2=DOID:0060072,2.28e-08,4;DOID:0060084,4.78e-07,3;DOID:127,4.78e-07,3 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0001310;2.49e-08;4 | |ontology_enrichment_uberon_v019=UBERON:0001310;2.49e-08;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001310,2.11e-08,4;UBERON:0001637,5.96e-07,42;UBERON:0003509,5.96e-07,42;UBERON:0004572,5.96e-07,42 | |||
|phase1_expression=0,0.214100523890983,0.563817616383885,1.0007329835313,0,0,0,0.631719873426831,0,0.491467873003018,1.39560233594486,0.218441372130172,0.791300934685361,0.247532705920093,0,1.34465029290355,0.602694528023977,0,2.43966399395253,1.23121058076788,0.612002073732759,0,0.85870796139317,0.273748850145768,0.502170558379211,2.21598876669059,2.05251473624864,1.8890587515283,0,0.383829398097213,0,0.919421224478927,0.30120591877825,0.369754010166788,0.309868802321207,0.426507697462265,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0.309706370895104,0.575384784644301,0.512321413058201,0.236482229888585,0.344745680736619,0,0,0,0.272906150057846,0.224723484445085,0.306083892370903,0,0,0,0,0,0,0.56738522469114,0,0,0,0.217188844705117,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0.182664153764634,0,0,0,0.426730222566507,0.400395987036012,0,0,0.954053754535364,0.569212969109448,0,0,0,0,0.263384084775077,0.393419540227666,0.393010762749165,0,0.334372990781356,0,0,0,0.668462741311041,0.589211814949674,0.221533894583621,0.270803863765016,0.896639238079726,0.260118695119756,0.986627427622057,0.276350017785848,0.579606171470105,0.14828656316206,0,0,1.0197840842781,0.766440987203842,0,0.759059076058509,0,0.651083453856419,0,0.752875595388864,0.255973222308837,1.24930726552346,0.473554504088034,0,0.201606743224732,0,0,0,0,0.383587685530591,0,0,0.289693037921647,0,0.486634870302636,0.283604451492204,0.221729397462564,0.087834785693126,20.956652079634,0,1.11235332835329,0,0,0,0.238490624305342,0,0,0.198762407366705,0.860234595106124,0,0,0,1.10047216776027,0.208994966536811,0,0,0.33472061276467,0,1.52054421143703,0.24406205754817,0.367663080345869,0.81014194788176,0.17859945656816,0,0.225222960966644,0,0,0.916008719652036,0,3.87780264148325,0.436094052142534,0.496971951695318,0.25326102332916,0.662045904066094,0,0.354668382198357,0,1.06748995729705,1.2333377420858,0.622422070799533,0.134710672069688,0,0.302714855289863,0,0.234321431833797,0.624320153660641,0.570471821544449,0.298897361103602,0,0,0.140450806702248,0.61246251376468,0.122834317311768,0.413303124703062,1.18800285728205,0.989067717114227,0,0.718618141816238,0,0,0,0,0.612975591598039,0.150238058906597,0.453728732640084,0.179389635688862,0,0.211931901159562,0,0,0.257640540045629,0,0.168776332241266,0.194874010322397,0,0,0.484938170456436,0.355009592516614,0.10075209822764,0.339121184620975,0.193260853163297,0.545492241181669,0.286804595389004,3.29329006549908,2.91565490307268,4.4153698290417,1.55491582523056,3.78481276313443,4.37972830890996,3.12899064659632,0.643240938192885,0,0,0.721879481669586,0.709840800239063,1.01150814046861,1.20505514941741,0.772057809126758,1.30727666455444,1.42362371466658,0.943819157121151,0.784885860501384,0.769494313892781,0.738155454624648,1.40241773803446,0.4115740113314,0,1.26755034821831,0,0,1.7658523976586,0.122988438543114,0,0.548751427043128,0,0.201057944823262,0,0.651616610620649,0,1.44331342025273,0.463721619900307,0.469634776943287,0,0,0.380508304469197,0,0.858486162094873,0.246217006087397,0.468008530278475,0,1.87467667973554,0.16798212819886,0.708875486211932,0.358234090811393,0.581267877027924,0,0,0.176096868026452,0.207328115540772,0,0,0.380987365753014,1.52795370223311,2.34434894420094,1.71072446022705,0.102827492703324,0.600686115687835,0.285826432630578,0.672786506072164,0.43596006883328,0.22001485746285,0.517086863031111,7.15312891703765,0,0,0,1.80045161983499,0,0.532844358032199,0.142977993658148,0,0.823240336780769,0,0,0,1.20575750823834,0.871533458600294,0.099972991182057,0,0,0,0.718874566474748,0,0,2.02693829334611,0.205476322550383,0.537182889719687,0.336255431980582,0.197030760201927,0,0.128343036279748,0,1.30139853857622,1.54657762555539,1.00509759200609,0,0,0,0,0.24538298343828,0.500170521059677,0.271265023699736,0.831883446123229,0.356857977594324,0.315404830067869,0.234282829985426,0.902838299183157,0,0,0,0.553107505625109,0.347534457872331,0.391602314925481,0.686286847621712,0,0,0.533637789017222,0,0,0,0.248107807818777,0.153461973288062,0,0.256278298511402,0,0.321707842287215,2.96836132889982,0.462629081407967,0.177561725313127,0.492762936082855,0.519254429183621,0.232420756919918,0.120859449591622,2.6065841139427,0.0920809889358963,0,0,1.31124414959424,0.451199612907412,0.308061348417659,1.56869953835371,1.46139224653261,0.105551628892876,0,0.170093705276516,0,0,0,0.501689773854853,1.52925763827023,0,0.223874754722178,0,0,0,0.328014645699706,0,0.103041011647722,0.366277859273374,0.41254749960294,0.574265537996172,0,0,0.193341436584244,0.462145851343933,0.307007349452259,0.137836572484531,0.214840489736547,0.145016693914229,0.0852266274161009,0.712256285173899,0.661139661443912,0,0.510450849978337,0.30347334256665,2.78907329578371,0.31481234683064,2.7881490806424,0.616067160352178,2.12922412126809,0.869932992075073,1.66791797193528,1.14499909393593,1.116475108079,0.632758849437452,0.953150969619124,0.511795582622668,0,0.636406495851874,0.78494864019923,0.179872457583315,0,0.235624804691373,2.02182481573316,4.7553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| ||
|short_description=p6@GAPDH | |short_description=p6@GAPDH | ||
}} | }} |
Latest revision as of 23:49, 19 September 2015
Short description: | p6@GAPDH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_GAPDH_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -28bp_to_ENST00000396858, uc001qov.1_5end |
EntrezGene: | GAPDH |
HGNC: | 4141 |
UniProt: | E7EUT4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 6.29e-11 | 5 |
vascular associated smooth muscle cell | 2.63e-10 | 32 |
electrically responsive cell | 1.23e-08 | 61 |
electrically active cell | 1.23e-08 | 61 |
neuronal stem cell | 1.54e-08 | 8 |
neuron | 1.85e-08 | 6 |
neuroblast | 1.85e-08 | 6 |
electrically signaling cell | 1.85e-08 | 6 |
smooth muscle cell of the umbilical artery | 2.11e-08 | 4 |
smooth muscle cell | 1.16e-07 | 43 |
smooth muscle myoblast | 1.16e-07 | 43 |
melanocyte | 5.87e-07 | 10 |
melanoblast | 5.87e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
umbilical artery | 2.11e-08 | 4 |
artery | 5.96e-07 | 42 |
arterial blood vessel | 5.96e-07 | 42 |
arterial system | 5.96e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
benign neoplasm | 2.28e-08 | 4 |
cell type benign neoplasm | 4.78e-07 | 3 |
leiomyoma | 4.78e-07 | 3 |