FFCP PHASE1:Hg19::chr10:97050727..97050740,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9124 | |EntrezGene=9124 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2067 | |HGNC=2067 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=28bp_to_ENST00000477757_5end | |association_with_transcript=28bp_to_ENST00000477757_5end | ||
|cluster_id=chr10:97050727..97050740,- | |||
|coexpression_cluster_id=C2083 | |||
|description=CAGE_peak_3_at_PDLIM1_5end | |description=CAGE_peak_3_at_PDLIM1_5end | ||
|id=chr10:97050727..97050740,- | |id=chr10:97050727..97050740,- | ||
|ontology_enrichment_celltype=CL:0000066!2.65e-18!254;CL:0002321!3.66e-13!248;CL:0000220!5.39e-13!246;CL:0000076!1.56e-12!62;CL:0000223!4.23e-12!59;CL:0002076!9.05e-10!43;CL:0002368!8.13e-07!13 | |ontology_enrichment_celltype=CL:0000066!2.65e-18!254;CL:0002321!3.66e-13!248;CL:0000220!5.39e-13!246;CL:0000076!1.56e-12!62;CL:0000223!4.23e-12!59;CL:0002076!9.05e-10!43;CL:0002368!8.13e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;6.84e-08;42!CL:0002368;6.96e-07;13!CL:0002251;7.84e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.19e-18,253;CL:0002321,5.33e-13,250;CL:0000076,6.20e-13,63;CL:0000223,2.20e-12,58;CL:0002076,4.89e-10,42;CL:0002368,6.04e-07,13;CL:0002251,8.07e-07,20 | |||
|ontology_enrichment_development_v019=CL:0000223;9.17e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!4.09e-19!169;UBERON:0000925!4.09e-19!169;UBERON:0006595!4.09e-19!169;UBERON:0001007!3.28e-15!155;UBERON:0001555!3.28e-15!155;UBERON:0007026!3.28e-15!155;UBERON:0003914!3.53e-13!118;UBERON:0004921!5.56e-12!129;UBERON:0004185!5.56e-12!129;UBERON:0000077!2.25e-11!130;UBERON:0001009!2.30e-11!113;UBERON:0005911!1.36e-10!82;UBERON:0000477!1.37e-10!286;UBERON:0004535!2.91e-10!110;UBERON:0003104!1.02e-09!238;UBERON:0009142!1.02e-09!238;UBERON:0000490!2.01e-09!138;UBERON:0003102!2.69e-09!95;UBERON:0004872!3.71e-09!84;UBERON:0004111!4.65e-09!241;UBERON:0003929!5.01e-09!54;UBERON:0002049!1.77e-08!79;UBERON:0007798!1.77e-08!79;UBERON:0000481!2.16e-08!347;UBERON:0001048!2.60e-08!168;UBERON:0000161!3.17e-08!35;UBERON:0002530!4.64e-08!59;UBERON:0002365!5.18e-08!31;UBERON:0002330!5.18e-08!31;UBERON:0009856!2.78e-07!26;UBERON:0007499!3.69e-07!25;UBERON:0009569!5.74e-07!113;UBERON:0000055!6.34e-07!69;UBERON:0000119!6.40e-07!312;UBERON:0001041!6.85e-07!98;UBERON:0005256!7.99e-07!143 | |ontology_enrichment_uberon=UBERON:0004119!4.09e-19!169;UBERON:0000925!4.09e-19!169;UBERON:0006595!4.09e-19!169;UBERON:0001007!3.28e-15!155;UBERON:0001555!3.28e-15!155;UBERON:0007026!3.28e-15!155;UBERON:0003914!3.53e-13!118;UBERON:0004921!5.56e-12!129;UBERON:0004185!5.56e-12!129;UBERON:0000077!2.25e-11!130;UBERON:0001009!2.30e-11!113;UBERON:0005911!1.36e-10!82;UBERON:0000477!1.37e-10!286;UBERON:0004535!2.91e-10!110;UBERON:0003104!1.02e-09!238;UBERON:0009142!1.02e-09!238;UBERON:0000490!2.01e-09!138;UBERON:0003102!2.69e-09!95;UBERON:0004872!3.71e-09!84;UBERON:0004111!4.65e-09!241;UBERON:0003929!5.01e-09!54;UBERON:0002049!1.77e-08!79;UBERON:0007798!1.77e-08!79;UBERON:0000481!2.16e-08!347;UBERON:0001048!2.60e-08!168;UBERON:0000161!3.17e-08!35;UBERON:0002530!4.64e-08!59;UBERON:0002365!5.18e-08!31;UBERON:0002330!5.18e-08!31;UBERON:0009856!2.78e-07!26;UBERON:0007499!3.69e-07!25;UBERON:0009569!5.74e-07!113;UBERON:0000055!6.34e-07!69;UBERON:0000119!6.40e-07!312;UBERON:0001041!6.85e-07!98;UBERON:0005256!7.99e-07!143 | ||
|ontology_enrichment_uberon_v019=UBERON:0002365;3.96e-08;31!UBERON:0002330;3.96e-08;31!UBERON:0000077;1.44e-07;27!UBERON:0001007;9.08e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.40e-23,160;UBERON:0000925,1.40e-23,160;UBERON:0006595,1.40e-23,160;UBERON:0001007,1.70e-19,145;UBERON:0001555,1.70e-19,145;UBERON:0007026,1.70e-19,145;UBERON:0004921,2.83e-16,118;UBERON:0003914,1.59e-13,117;UBERON:0001009,1.85e-11,112;UBERON:0005911,2.74e-11,82;UBERON:0001048,4.59e-11,160;UBERON:0003102,1.65e-10,99;UBERON:0004535,2.46e-10,109;UBERON:0001041,3.04e-10,87;UBERON:0000490,1.45e-09,148;UBERON:0003929,1.99e-09,54;UBERON:0004872,3.66e-09,83;UBERON:0004111,1.30e-08,240;UBERON:0002049,1.58e-08,78;UBERON:0007798,1.58e-08,78;UBERON:0002530,1.63e-08,59;UBERON:0002365,2.65e-08,31;UBERON:0002330,2.65e-08,31;UBERON:0000161,4.46e-08,36;UBERON:0009569,1.52e-07,112;UBERON:0009856,2.01e-07,26;UBERON:0004923,2.62e-07,66;UBERON:0007499,2.69e-07,25;UBERON:0000055,6.13e-07,68;UBERON:0002100,7.83e-07,199 | |||
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| ||
|short_description=p3@PDLIM1 | |short_description=p3@PDLIM1 | ||
}} | }} |
Latest revision as of 02:55, 20 September 2015
Short description: | p3@PDLIM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PDLIM1_5end |
Coexpression cluster: | C2083_Placental_acantholytic_Amniotic_Endothelial_Tracheal_Urothelial_Fibroblast |
Association with transcript: | 28bp_to_ENST00000477757_5end |
EntrezGene: | PDLIM1 |
HGNC: | 2067 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.19e-18 | 253 |
embryonic cell | 5.33e-13 | 250 |
squamous epithelial cell | 6.20e-13 | 63 |
endodermal cell | 2.20e-12 | 58 |
endo-epithelial cell | 4.89e-10 | 42 |
respiratory epithelial cell | 6.04e-07 | 13 |
epithelial cell of alimentary canal | 8.07e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.40e-23 | 160 |
endoderm | 1.40e-23 | 160 |
presumptive endoderm | 1.40e-23 | 160 |
digestive system | 1.70e-19 | 145 |
digestive tract | 1.70e-19 | 145 |
primitive gut | 1.70e-19 | 145 |
subdivision of digestive tract | 2.83e-16 | 118 |
epithelial tube | 1.59e-13 | 117 |
circulatory system | 1.85e-11 | 112 |
endo-epithelium | 2.74e-11 | 82 |
primordium | 4.59e-11 | 160 |
surface structure | 1.65e-10 | 99 |
cardiovascular system | 2.46e-10 | 109 |
foregut | 3.04e-10 | 87 |
unilaminar epithelium | 1.45e-09 | 148 |
gut epithelium | 1.99e-09 | 54 |
splanchnic layer of lateral plate mesoderm | 3.66e-09 | 83 |
anatomical conduit | 1.30e-08 | 240 |
vasculature | 1.58e-08 | 78 |
vascular system | 1.58e-08 | 78 |
gland | 1.63e-08 | 59 |
exocrine gland | 2.65e-08 | 31 |
exocrine system | 2.65e-08 | 31 |
orifice | 4.46e-08 | 36 |
subdivision of trunk | 1.52e-07 | 112 |
sac | 2.01e-07 | 26 |
organ component layer | 2.62e-07 | 66 |
epithelial sac | 2.69e-07 | 25 |
vessel | 6.13e-07 | 68 |
trunk | 7.83e-07 | 199 |