FFCP PHASE2:Hg19::chr6:90024990..90024993,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:2570 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:4091 |TSSclass...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=2570 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=4091 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P28476 | ||
|association_with_transcript=-23bp_to_NM_002043,uc003pnb.2_5end | |association_with_transcript=-23bp_to_NM_002043,uc003pnb.2_5end | ||
|cluster_id=chr6:90024990..90024993,- | |cluster_id=chr6:90024990..90024993,- | ||
Latest revision as of 03:22, 20 September 2015
| Short description: | p3@GABRR2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_GABRR2_5end |
| Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
| Association with transcript: | -23bp_to_NM_002043, uc003pnb.2_5end |
| EntrezGene: | GABRR2 |
| HGNC: | 4091 |
| UniProt: | P28476 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@GABRR2 |
|---|
0.00
0.25
0.50
0.75
1.00
1.25
1.50
1.75
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| retina | 4.27e-34 | 6 |
| photoreceptor array | 4.27e-34 | 6 |
| posterior segment of eyeball | 4.27e-34 | 6 |
| camera-type eye | 2.29e-11 | 20 |
| simple eye | 2.29e-11 | 20 |
| immature eye | 2.29e-11 | 20 |
| ocular region | 2.29e-11 | 20 |
| eyeball of camera-type eye | 2.29e-11 | 20 |
| optic cup | 2.29e-11 | 20 |
| optic vesicle | 2.29e-11 | 20 |
Showing 1 to 10 of 18 entries
