FFCP PHASE1:Hg19::chrX:153718988..153719008,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8273 | |EntrezGene=8273 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22979 | |HGNC=22979 | ||
|TSSclassifier=strong | |||
|UniProt=P09131,Q9BSL2 | |UniProt=P09131,Q9BSL2 | ||
|association_with_transcript=0bp_to_ENST00000263512,ENST00000393587,NM_001142391,NM_001142392,NM_019848,uc004flp.2,uc004flq.2,uc004flr.2_5end | |association_with_transcript=0bp_to_ENST00000263512,ENST00000393587,NM_001142391,NM_001142392,NM_019848,uc004flp.2,uc004flq.2,uc004flr.2_5end | ||
|cluster_id=chrX:153718988..153719008,- | |||
|coexpression_cluster_id=C345 | |coexpression_cluster_id=C345 | ||
|description=CAGE_peak_2_at_SLC10A3_5end | |description=CAGE_peak_2_at_SLC10A3_5end | ||
Latest revision as of 03:52, 20 September 2015
| Short description: | p2@SLC10A3 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_2_at_SLC10A3_5end |
| Coexpression cluster: | C345_Mesenchymal_Fibroblast_Alveolar_Renal_Pericytes_Hepatic_Smooth |
| Association with transcript: | 0bp_to_ENST00000263512, ENST00000393587, NM_001142391, NM_001142392, NM_019848, uc004flp.2, uc004flq.2, uc004flr.2_5end |
| EntrezGene: | SLC10A3 |
| HGNC: | 22979 |
| UniProt: | P09131Q9BSL2 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@SLC10A3 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| mesodermal cell | 1.22e-17 | 121 |
| muscle precursor cell | 1.65e-10 | 58 |
| myoblast | 1.65e-10 | 58 |
| multi-potent skeletal muscle stem cell | 1.65e-10 | 58 |
| smooth muscle cell | 2.72e-10 | 43 |
| smooth muscle myoblast | 2.72e-10 | 43 |
| muscle cell | 2.96e-10 | 55 |
| vascular associated smooth muscle cell | 7.49e-08 | 32 |
| lining cell | 9.05e-08 | 58 |
| barrier cell | 9.05e-08 | 58 |
Showing 1 to 10 of 13 entries
| Ontology term | p-value | n |
|---|---|---|
| epithelial vesicle | 1.92e-14 | 78 |
| multilaminar epithelium | 6.25e-13 | 83 |
| circulatory system | 1.91e-12 | 112 |
| mesoderm | 5.99e-12 | 315 |
| mesoderm-derived structure | 5.99e-12 | 315 |
| presumptive mesoderm | 5.99e-12 | 315 |
| cardiovascular system | 1.00e-11 | 109 |
| somite | 1.29e-11 | 71 |
| presomitic mesoderm | 1.29e-11 | 71 |
| presumptive segmental plate | 1.29e-11 | 71 |
Showing 1 to 10 of 37 entries
