FFCP PHASE1:Hg19::chr17:39646159..39646164,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8689 | |EntrezGene=8689 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6454 | |HGNC=6454 | ||
|TSSclassifier=strong | |||
|UniProt=O76013 | |UniProt=O76013 | ||
|association_with_transcript=-43bp_to_ENST00000328119,NM_003771,uc002hwt.2_5end | |association_with_transcript=-43bp_to_ENST00000328119,NM_003771,uc002hwt.2_5end | ||
|cluster_id=chr17:39646159..39646164,- | |||
|coexpression_cluster_id=C197 | |||
|description=CAGE_peak_1_at_KRT36_5end | |description=CAGE_peak_1_at_KRT36_5end | ||
|id=chr17:39646159..39646164,- | |id=chr17:39646159..39646164,- | ||
|ontology_enrichment_celltype=CL:0002178!9.64e-07!3 | |ontology_enrichment_celltype=CL:0002178!9.64e-07!3 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008814;5.48e-18;2!UBERON:0010056;5.48e-18;2 | |||
|ontology_enrichment_disease=DOID:3151!5.26e-18!1;DOID:3149!5.26e-18!1;DOID:3451!1.12e-09!2;DOID:4159!1.12e-09!2;DOID:0060122!1.12e-09!2 | |ontology_enrichment_disease=DOID:3151!5.26e-18!1;DOID:3149!5.26e-18!1;DOID:3451!1.12e-09!2;DOID:4159!1.12e-09!2;DOID:0060122!1.12e-09!2 | ||
|ontology_enrichment_disease_v019=DOID:3151;5.97e-34;1!DOID:3149;5.97e-34;1!DOID:3451;9.87e-18;2!DOID:4159;9.87e-18;2!DOID:0060122;9.87e-18;2!DOID:4362;5.73e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,7.06e-34,1;DOID:3149,7.06e-34,1;DOID:3451,1.07e-17,2;DOID:4159,1.07e-17,2;DOID:0060122,1.07e-17,2;DOID:4362,5.73e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0001042!1.69e-41!10;UBERON:0009145!1.69e-41!10;UBERON:0006562!9.41e-38!11;UBERON:0001723!1.88e-23!3;UBERON:0001033!1.88e-23!3;UBERON:0010056!1.88e-23!3;UBERON:0001557!5.95e-22!19;UBERON:0008814!3.26e-18!15;UBERON:0002370!1.22e-17!4;UBERON:0005058!1.22e-17!4;UBERON:0009113!1.22e-17!4;UBERON:0003295!1.22e-17!4;UBERON:0005562!1.22e-17!4;UBERON:0002372!1.44e-17!1;UBERON:0001961!1.44e-17!1;UBERON:0001744!1.44e-17!1;UBERON:0001735!1.44e-17!1;UBERON:0003351!4.30e-12!6;UBERON:0004177!1.68e-10!7;UBERON:0000072!4.13e-09!46;UBERON:0000078!5.83e-09!18;UBERON:0000065!6.62e-08!53;UBERON:0000161!7.06e-08!35;UBERON:0000166!9.29e-08!21;UBERON:0000974!1.29e-07!10;UBERON:0003408!1.29e-07!10;UBERON:0009722!5.31e-07!11;UBERON:0007690!5.31e-07!11 | |ontology_enrichment_uberon=UBERON:0001042!1.69e-41!10;UBERON:0009145!1.69e-41!10;UBERON:0006562!9.41e-38!11;UBERON:0001723!1.88e-23!3;UBERON:0001033!1.88e-23!3;UBERON:0010056!1.88e-23!3;UBERON:0001557!5.95e-22!19;UBERON:0008814!3.26e-18!15;UBERON:0002370!1.22e-17!4;UBERON:0005058!1.22e-17!4;UBERON:0009113!1.22e-17!4;UBERON:0003295!1.22e-17!4;UBERON:0005562!1.22e-17!4;UBERON:0002372!1.44e-17!1;UBERON:0001961!1.44e-17!1;UBERON:0001744!1.44e-17!1;UBERON:0001735!1.44e-17!1;UBERON:0003351!4.30e-12!6;UBERON:0004177!1.68e-10!7;UBERON:0000072!4.13e-09!46;UBERON:0000078!5.83e-09!18;UBERON:0000065!6.62e-08!53;UBERON:0000161!7.06e-08!35;UBERON:0000166!9.29e-08!21;UBERON:0000974!1.29e-07!10;UBERON:0003408!1.29e-07!10;UBERON:0009722!5.31e-07!11;UBERON:0007690!5.31e-07!11 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;9.13e-66;2!UBERON:0005058;9.13e-66;2!UBERON:0009113;9.13e-66;2!UBERON:0001723;6.25e-45;3!UBERON:0001033;6.25e-45;3!UBERON:0004177;4.34e-27;5!UBERON:0005057;4.34e-27;5!UBERON:0000014;1.50e-09;4!UBERON:0000002;7.58e-07;6!UBERON:0001560;7.58e-07;6!UBERON:0000020;9.13e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001042,6.89e-53,10;UBERON:0009145,6.89e-53,10;UBERON:0006562,3.65e-48,11;UBERON:0001723,6.25e-45,3;UBERON:0001033,6.25e-45,3;UBERON:0010056,6.25e-45,3;UBERON:0002370,1.38e-33,4;UBERON:0005058,1.38e-33,4;UBERON:0009113,1.38e-33,4;UBERON:0003295,1.38e-33,4;UBERON:0005562,1.38e-33,4;UBERON:0008814,9.18e-30,18;UBERON:0001557,3.07e-28,19;UBERON:0003351,8.47e-23,6;UBERON:0004177,1.04e-19,7;UBERON:0005057,1.04e-19,7;UBERON:0000974,3.97e-14,10;UBERON:0003408,3.97e-14,10;UBERON:0009722,6.11e-13,11;UBERON:0007690,6.11e-13,11;UBERON:0000072,8.15e-12,47;UBERON:0000065,2.34e-10,54;UBERON:0000014,1.57e-09,4;UBERON:0000153,4.34e-09,62;UBERON:0007811,4.34e-09,62;UBERON:0001004,1.07e-07,74;UBERON:0000166,4.94e-07,22;UBERON:0000002,7.58e-07,6;UBERON:0001560,7.58e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,166.890221901488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.01891218839339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48780113114433,1.42771842880473,0,0,0,239.706139434554,30.45876379659,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,166.890221901488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.01891218839339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33946505990805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48780113114433,1.42771842880473,0,0,0,239.706139434554,30.45876379659,0.134704106029175,0,0,0,0,0,0,0,0,0,0,0.805095174364105,0 | ||
|short_description=p1@KRT36 | |short_description=p1@KRT36 | ||
}} | }} |
Latest revision as of 05:05, 20 September 2015
Short description: | p1@KRT36 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_KRT36_5end |
Coexpression cluster: | C197_tongue_esophagus_tonsil_salivary_cervix_nasal_Gingival |
Association with transcript: | -43bp_to_ENST00000328119, NM_003771, uc002hwt.2_5end |
EntrezGene: | KRT36 |
HGNC: | 6454 |
UniProt: | O76013 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chordate pharynx | 6.89e-53 | 10 |
pharyngeal region of foregut | 6.89e-53 | 10 |
pharynx | 3.65e-48 | 11 |
tongue | 6.25e-45 | 3 |
gustatory system | 6.25e-45 | 3 |
future tongue | 6.25e-45 | 3 |
thymus | 1.38e-33 | 4 |
hemolymphoid system gland | 1.38e-33 | 4 |
thymic region | 1.38e-33 | 4 |
pharyngeal gland | 1.38e-33 | 4 |
thymus primordium | 1.38e-33 | 4 |
pharyngeal arch system | 9.18e-30 | 18 |
upper respiratory tract | 3.07e-28 | 19 |
pharyngeal epithelium | 8.47e-23 | 6 |
hemopoietic organ | 1.04e-19 | 7 |
immune organ | 1.04e-19 | 7 |
neck | 3.97e-14 | 10 |
gland of gut | 3.97e-14 | 10 |
entire pharyngeal arch endoderm | 6.11e-13 | 11 |
early pharyngeal endoderm | 6.11e-13 | 11 |
segment of respiratory tract | 8.15e-12 | 47 |
respiratory tract | 2.34e-10 | 54 |
zone of skin | 1.57e-09 | 4 |
anterior region of body | 4.34e-09 | 62 |
craniocervical region | 4.34e-09 | 62 |
respiratory system | 1.07e-07 | 74 |
oral opening | 4.94e-07 | 22 |
uterine cervix | 7.58e-07 | 6 |
neck of organ | 7.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 7.06e-34 | 1 |
keratoacanthoma | 7.06e-34 | 1 |
skin carcinoma | 1.07e-17 | 2 |
skin cancer | 1.07e-17 | 2 |
integumentary system cancer | 1.07e-17 | 2 |
cervical cancer | 5.73e-08 | 5 |