FFCP PHASE1:Hg19::chr18:67956244..67956287,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:67956244..67956287,+
|short_description=p1@SOCS6
|description=CAGE_peak_1_at_SOCS6_5end
|association_with_transcript=76bp_to_ENST00000397942_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9306 | |EntrezGene=9306 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16833 | |HGNC=16833 | ||
|TSSclassifier=strong | |||
|UniProt=O14544 | |UniProt=O14544 | ||
|association_with_transcript=76bp_to_ENST00000397942_5end | |||
|cluster_id=chr18:67956244..67956287,+ | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_1_at_SOCS6_5end | |||
|id=chr18:67956244..67956287,+ | |||
|ontology_enrichment_celltype=CL:0000557!1.07e-16!71;CL:0000839!2.54e-14!70;CL:0002009!1.77e-13!65;CL:0002194!8.61e-13!63;CL:0000576!8.61e-13!63;CL:0000040!8.61e-13!63;CL:0000559!8.61e-13!63;CL:0000766!1.17e-12!76;CL:0002057!7.05e-11!42;CL:0000860!9.04e-11!45;CL:0000763!5.79e-07!112;CL:0000049!5.79e-07!112;CL:0002620!8.18e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.00e-13;33!CL:0002057;2.00e-13;33!CL:0000473;1.12e-12;39!CL:0000234;1.12e-12;39!CL:0000576;3.24e-08;48!CL:0002620;7.90e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000557,5.18e-17,67;CL:0000839,1.47e-14,66;CL:0002009,1.00e-13,61;CL:0002194,4.99e-13,59;CL:0000576,4.99e-13,59;CL:0000040,4.99e-13,59;CL:0000559,4.99e-13,59;CL:0000766,7.83e-13,72;CL:0000473,1.05e-12,48;CL:0000234,1.05e-12,48;CL:0000860,7.37e-11,42;CL:0002057,7.37e-11,42;CL:0000763,6.45e-07,108;CL:0000049,6.45e-07,108;CL:0002620,8.16e-07,23 | |||
|ontology_enrichment_development_v019=CL:0002057;2.38e-08;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!1.00e-19!511;UBERON:0000468!1.11e-16!659;UBERON:0002371!7.02e-15!80;UBERON:0000467!1.55e-14!625;UBERON:0000480!3.08e-14!626;UBERON:0001474!1.11e-12!86;UBERON:0004765!3.53e-12!101;UBERON:0001434!3.53e-12!101;UBERON:0000922!8.90e-11!612;UBERON:0002050!9.91e-10!605;UBERON:0005423!9.91e-10!605;UBERON:0000923!1.05e-09!604;UBERON:0005291!1.05e-09!604;UBERON:0006598!1.05e-09!604;UBERON:0002532!1.05e-09!604;UBERON:0002405!7.36e-08!115;UBERON:0002204!2.36e-07!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.57e-15,76;UBERON:0001474,8.95e-13,82;UBERON:0004765,2.99e-12,90;UBERON:0001434,9.30e-12,100;UBERON:0002050,1.14e-09,564;UBERON:0000922,1.69e-09,592;UBERON:0000923,1.80e-09,560;UBERON:0010316,1.80e-09,560;UBERON:0005291,1.80e-09,560;UBERON:0006598,1.80e-09,560;UBERON:0010317,1.80e-09,560;UBERON:0002532,1.80e-09,560;UBERON:0002405,5.07e-09,93;UBERON:0005423,1.04e-08,581;UBERON:0002204,4.95e-07,167 | |||
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| ||
|short_description=p1@SOCS6 | |||
}} | }} |
Latest revision as of 07:09, 20 September 2015
Short description: | p1@SOCS6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SOCS6_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | 76bp_to_ENST00000397942_5end |
EntrezGene: | SOCS6 |
HGNC: | 16833 |
UniProt: | O14544 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 5.18e-17 | 67 |
myeloid lineage restricted progenitor cell | 1.47e-14 | 66 |
macrophage dendritic cell progenitor | 1.00e-13 | 61 |
monopoietic cell | 4.99e-13 | 59 |
monocyte | 4.99e-13 | 59 |
monoblast | 4.99e-13 | 59 |
promonocyte | 4.99e-13 | 59 |
myeloid leukocyte | 7.83e-13 | 72 |
defensive cell | 1.05e-12 | 48 |
phagocyte | 1.05e-12 | 48 |
classical monocyte | 7.37e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 7.37e-11 | 42 |
myeloid cell | 6.45e-07 | 108 |
common myeloid progenitor | 6.45e-07 | 108 |
skin fibroblast | 8.16e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.57e-15 | 76 |
bone element | 8.95e-13 | 82 |
skeletal element | 2.99e-12 | 90 |
skeletal system | 9.30e-12 | 100 |
embryonic structure | 1.14e-09 | 564 |
embryo | 1.69e-09 | 592 |
germ layer | 1.80e-09 | 560 |
germ layer / neural crest | 1.80e-09 | 560 |
embryonic tissue | 1.80e-09 | 560 |
presumptive structure | 1.80e-09 | 560 |
germ layer / neural crest derived structure | 1.80e-09 | 560 |
epiblast (generic) | 1.80e-09 | 560 |
immune system | 5.07e-09 | 93 |
developing anatomical structure | 1.04e-08 | 581 |
musculoskeletal system | 4.95e-07 | 167 |