FFCP PHASE1:Hg19::chr3:129279894..129279916,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23129 | |EntrezGene=23129 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9107 | |HGNC=9107 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000506979_5end | |association_with_transcript=0bp_to_ENST00000506979_5end | ||
|cluster_id=chr3:129279894..129279916,- | |||
|coexpression_cluster_id=C2718 | |||
|description=CAGE_peak_5_at_PLXND1_5end | |description=CAGE_peak_5_at_PLXND1_5end | ||
|id=chr3:129279894..129279916,- | |id=chr3:129279894..129279916,- | ||
|ontology_enrichment_celltype=CL:0000055!2.28e-35!180;CL:0000057!7.71e-23!75;CL:0002620!2.32e-14!23;CL:0000183!3.51e-12!59;CL:0000680!4.77e-12!57;CL:0000056!4.77e-12!57;CL:0000355!4.77e-12!57;CL:0000187!8.85e-11!54;CL:0000393!1.82e-08!60;CL:0000211!1.82e-08!60;CL:0000048!1.87e-07!430;CL:0000723!2.95e-07!436;CL:0000222!3.25e-07!119;CL:0000192!8.13e-07!42;CL:0000514!8.13e-07!42;CL:0000034!9.19e-07!444 | |ontology_enrichment_celltype=CL:0000055!2.28e-35!180;CL:0000057!7.71e-23!75;CL:0002620!2.32e-14!23;CL:0000183!3.51e-12!59;CL:0000680!4.77e-12!57;CL:0000056!4.77e-12!57;CL:0000355!4.77e-12!57;CL:0000187!8.85e-11!54;CL:0000393!1.82e-08!60;CL:0000211!1.82e-08!60;CL:0000048!1.87e-07!430;CL:0000723!2.95e-07!436;CL:0000222!3.25e-07!119;CL:0000192!8.13e-07!42;CL:0000514!8.13e-07!42;CL:0000034!9.19e-07!444 | ||
|ontology_enrichment_celltype_v019=CL:0002620;5.90e-20;23!CL:0000057;1.12e-12;73!CL:0002320;5.32e-09;188!CL:0002551;2.36e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.84e-27,76;CL:0002620,4.24e-20,23;CL:0000048,9.75e-13,427;CL:0000723,4.90e-12,433;CL:0000034,3.84e-11,441;CL:0000680,4.41e-11,58;CL:0000056,4.41e-11,58;CL:0000355,4.41e-11,58;CL:0000187,1.74e-09,55;CL:0002320,3.44e-08,361;CL:0000393,1.09e-07,61;CL:0000211,1.09e-07,61;CL:0002551,2.12e-07,6;CL:0000188,7.75e-07,9;CL:0002556,9.72e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000355;2.31e-07;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:17;7.13e-07;5!DOID:450;7.13e-07;5!DOID:66;7.13e-07;5!DOID:423;7.13e-07;5!DOID:0080000;7.13e-07;5!DOID:11722;7.13e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,7.48e-07,5;DOID:450,7.48e-07,5;DOID:66,7.48e-07,5;DOID:423,7.48e-07,5;DOID:0080000,7.48e-07,5;DOID:11722,7.48e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.21e-18!83;UBERON:0002329!1.21e-18!83;UBERON:0003077!1.21e-18!83;UBERON:0003059!1.21e-18!83;UBERON:0007282!1.21e-18!83;UBERON:0009618!1.21e-18!83;UBERON:0007285!1.21e-18!83;UBERON:0004290!6.98e-16!70;UBERON:0005256!1.79e-13!143;UBERON:0000486!8.77e-13!82;UBERON:0002199!3.01e-11!45;UBERON:0002416!3.01e-11!45;UBERON:0002097!3.75e-11!40;UBERON:0001134!4.27e-11!61;UBERON:0002036!4.27e-11!61;UBERON:0003082!4.27e-11!61;UBERON:0002385!4.68e-11!63;UBERON:0001015!4.68e-11!63;UBERON:0000383!4.68e-11!63;UBERON:0000475!7.51e-11!365;UBERON:0003102!8.48e-09!95;UBERON:0002100!9.17e-09!216;UBERON:0002067!1.75e-07!9;UBERON:0004016!1.75e-07!9;UBERON:0010083!1.75e-07!9 | |ontology_enrichment_uberon=UBERON:0000914!1.21e-18!83;UBERON:0002329!1.21e-18!83;UBERON:0003077!1.21e-18!83;UBERON:0003059!1.21e-18!83;UBERON:0007282!1.21e-18!83;UBERON:0009618!1.21e-18!83;UBERON:0007285!1.21e-18!83;UBERON:0004290!6.98e-16!70;UBERON:0005256!1.79e-13!143;UBERON:0000486!8.77e-13!82;UBERON:0002199!3.01e-11!45;UBERON:0002416!3.01e-11!45;UBERON:0002097!3.75e-11!40;UBERON:0001134!4.27e-11!61;UBERON:0002036!4.27e-11!61;UBERON:0003082!4.27e-11!61;UBERON:0002385!4.68e-11!63;UBERON:0001015!4.68e-11!63;UBERON:0000383!4.68e-11!63;UBERON:0000475!7.51e-11!365;UBERON:0003102!8.48e-09!95;UBERON:0002100!9.17e-09!216;UBERON:0002067!1.75e-07!9;UBERON:0004016!1.75e-07!9;UBERON:0010083!1.75e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0002097;4.80e-13;41!UBERON:0002199;3.81e-11;46!UBERON:0002416;3.81e-11;46!UBERON:0003102;4.40e-11;50!UBERON:0002067;2.01e-10;9!UBERON:0002384;1.52e-08;198!UBERON:0001434;4.42e-08;36!UBERON:0000075;1.24e-07;16!UBERON:0003104;6.28e-07;7!UBERON:0009142;6.28e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,3.94e-17,41;UBERON:0002199,2.94e-16,46;UBERON:0002416,2.94e-16,46;UBERON:0007524,6.88e-16,73;UBERON:0007503,7.66e-16,78;UBERON:0002329,9.50e-16,71;UBERON:0003059,9.50e-16,71;UBERON:0007282,9.50e-16,71;UBERON:0004290,9.50e-16,71;UBERON:0009618,9.50e-16,71;UBERON:0003077,2.47e-15,72;UBERON:0007285,2.47e-15,72;UBERON:0000486,4.07e-13,83;UBERON:0003102,4.91e-13,99;UBERON:0003104,7.21e-11,160;UBERON:0009142,7.21e-11,160;UBERON:0002067,1.77e-10,9;UBERON:0004016,1.77e-10,9;UBERON:0010083,1.77e-10,9;UBERON:0001134,1.03e-09,62;UBERON:0002036,1.03e-09,62;UBERON:0003082,1.03e-09,62;UBERON:0005256,3.80e-09,122;UBERON:0002385,4.20e-09,64;UBERON:0001015,4.20e-09,64;UBERON:0000383,4.20e-09,64;UBERON:0002384,4.69e-09,371;UBERON:0000075,1.08e-07,16;UBERON:0001758,9.72e-07,6;UBERON:0003672,9.72e-07,6 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.704772020479856,3.00219895059391,1.34088328328186,1.74467704820074,0,1.26343974685366,2.35067065379855,0.491467873003018,0,0.218441372130172,0.263766978228454,5.321953177282,4.63956326019082,1.34465029290355,0,0,0,1.23121058076788,1.42800483870977,0.313454721478088,0.85870796139317,0.547497700291537,0.376627918784408,0,0,0,0,0,0,0,0,0,0.0774672005803016,0.142169232487422,0.293600439334847,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,1.02290049474824,2.53007406669196,7.52006865953834,1.73815822752988,4.7717156823066,3.89307896242109,0.283604451492204,0.221729397462564,0.790513071238134,0.261958150995425,0,0,0,0,0,0,1.14398982156026,0.74291500265913,0.198762407366705,0.860234595106124,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.0892997282840798,0.44905874525234,0.112611480483322,0,0.949265659568129,0,0,0,0,0.993943903390637,1.2663051166458,1.05927344650575,1.43418310374407,0.709336764396714,2.80338800071154,0,1.2333377420858,4.04574346019696,0.538842688278752,0.653847612453835,2.27036141467397,0,3.98346434117454,5.93104145977609,9.69802096625564,6.57574194427925,5.40198693761318,3.72307772046703,4.3539750077697,7.14539599392126,3.56219520204127,6.40619843289746,4.75201142912821,2.71993622206413,2.73048408581408,2.15585442544872,6.39677233025452,4.62938523526267,7.75779523355712,5.26773145057006,1.83892677479412,2.70428506031874,0.113432183160021,8.07253360599879,8.32873816392413,5.29829752898905,6.60200411385685,6.28620428354477,6.95629458123199,5.76962254627928,5.90717162844432,7.79496041289589,7.06814567883521,7.36399189138395,9.21382523867228,5.68015348026583,4.93685281315437,4.40857540007268,0,0,0,0,0.132529768321485,0.348581828608555,0.310983165046111,0,0.36497735907583,6.25798129319264,6.43240938192885,6.90674606762403,7.42988684851167,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,2.94017422771084,0,0,0,0,0,0,0,0,0,0.0925884451585296,3.9096996637239,8.31947828223663,0,0.695582429850461,0.117408694235822,0,0.462985512576611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0.190493682876507,0,0,0,0.102827492703324,0,0,3.1396703616701,0.43596006883328,0.36669142910475,1.42198887333556,21.4593867511129,0.845302752556,4.25500986535793,5.2003718455683,3.85811061393213,2.83698264046557,4.26275486425759,1.85871391755592,18.9917561887005,8.23240336780769,1.30294473717494,2.13235169245527,1.58390374586686,0.301439377059586,0,0.299918973546171,0,0,0,4.0736225433569,3.44585807502342,7.13184525203592,1.44781306667579,3.28762116080613,5.37182889719687,0,0.197030760201927,0.215627574859517,0.256686072559497,0.76228387266739,0,0,0.167516265334349,0,0,0,0,2.08575535922538,5.00170521059677,3.25518028439683,13.7260768610333,12.3116002270042,8.04282316673067,4.68565659970853,6.01892199455438,2.27407504055985,4.1389228517002,1.99267679560631,0.921845842708516,4.25729710893606,11.7480694477644,3.0882908142977,0,0,0,0,0,0.30239029332968,0.744323423456331,0.61384789315225,0,1.53766979106841,2.55853624533352,0.160853921143607,4.45254199334973,0.616838775210622,0.177561725313127,1.23190734020714,1.03850885836724,1.04589340613963,0,0,0,0.803701137152247,1.45672934405374,0.786746489756545,0.902399225814824,0.462092022626489,1.56869953835371,1.46139224653261,0.73886140225013,0,0,0.431831832204279,1.54227252690289,3.79325012561394,4.01351819083883,0,0,2.68649705666614,0,0,2.05160100093111,1.31205858279882,0,0.721287081534056,5.03632056500889,4.70304149547352,1.14853107599234,0,1.6068392984416,2.70678011217942,1.69453478826109,1.84204409671355,1.37836572484531,1.82614416276065,2.0302337147992,1.10794615640931,1.86967274858148,0,0,0,0,0.929691098594572,2.20368642781448,0.6970372701606,1.23213432070436,1.06461206063404,0,0.37064843820784,0.429374660225974,1.86079184679834,1.2655176988749,0.762520775695299,2.81487570442467,0.855877976067841,2.22742273548156,1.56989728039846,2.15846949099978,1.92175920815238,1.88499843753098,0.404364963146632,0,0,4.38870365180631,0.243713489631284,2.11300293513511,2.45699840534374,1.27264888758341,1.13008116620243,0.551365343546124,0.66343897524122,0.438450885253763,1.15755106853338,1.31178950409327,0.811641507850816,0,1.12678241012897,2.00775893085672,2.25972794330179,0.7133421029625,3.90237170477658,0.844430541190656,1.31717957183961,7.20999030154859,15.0471929705343,0,0,0,0.941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48642540100575,0.577076851905779,0,0,0,0,0.211673582723883,0.324621940274555,0,8.44468312422811,0.156679895773023,0,0,0,0.201799707191048,0,0,0.307240764308458,0,0.166849141711909,0,0,0,0,0,0,0,0.146508179271894,0,0.222886768554957,0,0,0.593929361665277,0,0,0,0,0,0,0,0.552567831062295,0,0.102268682502155,0.123084805461069,1.24415835064723,0,0,1.02314474045374,0.493217028184668,0,2.222739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| ||
|short_description=p5@PLXND1 | |short_description=p5@PLXND1 | ||
}} | }} |
Latest revision as of 17:46, 24 September 2015
Short description: | p5@PLXND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_PLXND1_5end |
Coexpression cluster: | C2718_Mesenchymal_glioblastoma_Cardiac_Pericytes_Trabecular_Olfactory_Hair |
Association with transcript: | 0bp_to_ENST00000506979_5end |
EntrezGene: | PLXND1 |
HGNC: | 9107 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.84e-27 | 76 |
skin fibroblast | 4.24e-20 | 23 |
multi fate stem cell | 9.75e-13 | 427 |
somatic stem cell | 4.90e-12 | 433 |
stem cell | 3.84e-11 | 441 |
muscle precursor cell | 4.41e-11 | 58 |
myoblast | 4.41e-11 | 58 |
multi-potent skeletal muscle stem cell | 4.41e-11 | 58 |
muscle cell | 1.74e-09 | 55 |
connective tissue cell | 3.44e-08 | 361 |
electrically responsive cell | 1.09e-07 | 61 |
electrically active cell | 1.09e-07 | 61 |
fibroblast of dermis | 2.12e-07 | 6 |
cell of skeletal muscle | 7.75e-07 | 9 |
fibroblast of periodontium | 9.72e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
skin of body | 3.94e-17 | 41 |
integument | 2.94e-16 | 46 |
integumental system | 2.94e-16 | 46 |
dense mesenchyme tissue | 6.88e-16 | 73 |
epithelial vesicle | 7.66e-16 | 78 |
somite | 9.50e-16 | 71 |
presomitic mesoderm | 9.50e-16 | 71 |
presumptive segmental plate | 9.50e-16 | 71 |
dermomyotome | 9.50e-16 | 71 |
trunk paraxial mesoderm | 9.50e-16 | 71 |
paraxial mesoderm | 2.47e-15 | 72 |
presumptive paraxial mesoderm | 2.47e-15 | 72 |
multilaminar epithelium | 4.07e-13 | 83 |
surface structure | 4.91e-13 | 99 |
mesenchyme | 7.21e-11 | 160 |
entire embryonic mesenchyme | 7.21e-11 | 160 |
dermis | 1.77e-10 | 9 |
dermatome | 1.77e-10 | 9 |
future dermis | 1.77e-10 | 9 |
skeletal muscle tissue | 1.03e-09 | 62 |
striated muscle tissue | 1.03e-09 | 62 |
myotome | 1.03e-09 | 62 |
trunk mesenchyme | 3.80e-09 | 122 |
muscle tissue | 4.20e-09 | 64 |
musculature | 4.20e-09 | 64 |
musculature of body | 4.20e-09 | 64 |
connective tissue | 4.69e-09 | 371 |
subdivision of skeletal system | 1.08e-07 | 16 |
periodontium | 9.72e-07 | 6 |
dentition | 9.72e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 7.48e-07 | 5 |
myotonic disease | 7.48e-07 | 5 |
muscle tissue disease | 7.48e-07 | 5 |
myopathy | 7.48e-07 | 5 |
muscular disease | 7.48e-07 | 5 |
myotonic dystrophy | 7.48e-07 | 5 |