FFCP PHASE1:Hg19::chr22:39898242..39898277,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54471 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25979 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000478342,ENST00000481746_5end | |||
|cluster_id=chr22:39898242..39898277,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_4_at_SMCR7L_5end | |||
|id=chr22:39898242..39898277,+ | |||
|ontology_enrichment_celltype=CL:0002139!3.09e-10!24;CL:0000071!2.96e-08!18;CL:0002546!2.96e-08!18;CL:0000115!4.86e-08!35;CL:0000222!1.59e-07!119;CL:0002078!2.56e-07!44;CL:0000076!4.30e-07!62;CL:0000220!6.40e-07!246 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.65e-11;24!CL:0000071;2.51e-09;18!CL:0000115;8.45e-09;36!CL:1000413;2.22e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.49e-12,24;CL:0000115,3.00e-11,36;CL:0002078,1.97e-10,45;CL:0000071,2.44e-10,18;CL:0002546,2.44e-10,18;CL:1000413,2.02e-08,9;CL:0000213,2.47e-08,58;CL:0000215,2.47e-08,58;CL:0000222,4.20e-07,121 | |||
|ontology_enrichment_development_v019=CL:0002546;2.51e-09;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!5.72e-10!69;UBERON:0002049!2.67e-09!79;UBERON:0007798!2.67e-09!79;UBERON:0001986!2.96e-08!18;UBERON:0004638!2.96e-08!18;UBERON:0004852!2.96e-08!18;UBERON:0000487!9.26e-08!22;UBERON:0004872!1.26e-07!84;UBERON:0001981!2.21e-07!60;UBERON:0007500!2.21e-07!60;UBERON:0004537!2.21e-07!60;UBERON:0006965!2.21e-07!60;UBERON:0006914!3.56e-07!25;UBERON:0000119!9.32e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.51e-09;18!UBERON:0001986;2.51e-09;18!UBERON:0004852;2.51e-09;18!UBERON:0000487;3.54e-09;22!UBERON:0006914;1.37e-08;25!UBERON:0003915;2.22e-07;9!UBERON:0004700;2.22e-07;9!UBERON:0001917;2.22e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.44e-10,18;UBERON:0001986,2.44e-10,18;UBERON:0004852,2.44e-10,18;UBERON:0000487,2.71e-10,22;UBERON:0000055,3.61e-10,68;UBERON:0006914,1.03e-09,25;UBERON:0002049,1.21e-09,78;UBERON:0007798,1.21e-09,78;UBERON:0004872,1.77e-09,83;UBERON:0003915,2.02e-08,9;UBERON:0004700,2.02e-08,9;UBERON:0001917,2.02e-08,9;UBERON:0004535,3.76e-08,109;UBERON:0007500,1.05e-07,59;UBERON:0001981,1.05e-07,59;UBERON:0004537,1.05e-07,59;UBERON:0006965,1.05e-07,59;UBERON:0001009,1.31e-07,112 | |||
|phase1_expression=0.908391896352783,0.856402095563933,1.40954404095971,0,1.34088328328186,0.872338524100369,0,0.631719873426831,0.261185628199839,1.47440361900905,2.09340350391728,1.09220686065086,1.31883489114227,0.123766352960047,0,0.672325146451775,0.602694528023977,1.46062018077475,0.487932798790507,1.10808952269109,1.22400414746552,0,0.286235987131057,0.273748850145768,0.251085279189606,0.61130724598361,0.492603536699674,0.236132343941038,0,0.383829398097213,0.309632246632152,0.919421224478927,1.50602959389125,0.739508020333575,0.92960640696362,0.853015394924529,0,0.553995408531877,0.200544447470142,0.217010870715852,0,0.32389366601898,0.515151135268373,0.581592955118259,0.755751887377619,0.485168122375632,0.464858073811369,0.411167888021826,0,0,0.512321413058201,0,0,0,0,0.188242339542605,0.545812300115692,0.224723484445085,0.612167784741805,0.320929027076094,0,0.329851300186716,0,0.426224750532694,0,0,0,0.251248665256743,0,0.217188844705117,0.605399502633369,0.368277635987565,0,0,0.425208599930087,0,0.44931452458598,0.300353785683013,0.32145117339416,0.855038231223746,0.59675003159727,0.182664153764634,0,0.546138611262131,0,0.426730222566507,1.20118796110804,0.574752439954483,0,0,0,0,0.382273228125229,0,0,0.263384084775077,0.590129310341499,0.393010762749165,0.411202997999018,0.501559486172034,0,0.473447805734733,0,0,0.294605907474837,0,0.541607727530031,0,0.390178042679635,0.164437904603676,0.552700035571697,0.579606171470105,0.444859689486181,0.535081656179426,1.04535523804977,0.339928028092699,0,0,0.253019692019503,0.318565414324097,0.651083453856419,0.950452044448374,0.301150238155546,0.76791966692651,2.49861453104692,0.473554504088034,0.821127996921047,0.201606743224732,0.267440195783507,0.289648807765598,0,1.34140171940727,1.53435074212236,0.722878304769133,1.00267582127178,0.579386075843295,0.795285947051099,0.486634870302636,0.378139268656271,1.33037638477538,0.614843499851882,9.16853528483989,2.5500670180478,1.11235332835329,0.649094787309367,0.522389211897802,0.132957960518865,1.19245312152671,0.571994910780128,1.48583000531826,1.78886166630035,1.72046919021225,1.73570250803797,3.95715559346807,2.51699661725944,2.20094433552054,1.67195973229448,2.06733407335463,3.91342888955381,0.66944122552934,0.402829317109147,2.28081631715554,0.732186172644509,2.57364156242108,0.81014194788176,1.42879565254528,2.2452937262617,1.35133776579987,1.53316637465883,0.949265659568129,1.46561395144326,0,0,1.74437620857014,0.993943903390637,0.633152558322899,0.662045904066094,1.14734648299525,0.354668382198357,1.12135520028461,0,0.49333509683432,0.622422070799533,1.21239604862719,1.30769522490767,1.36221684880438,0.576175924479999,0.937285727335186,0.936480230490962,2.2818872861778,2.54062756938062,0.939475989150119,1.13311061057692,0.842704840213491,1.63323337003915,0.368502951935304,0.413303124703062,0,0.247266929278557,0.910161361938026,2.15585442544872,0.336672227908132,0.375355559615893,1.10825646193673,0.438977620880838,0.30648779579902,0.150238058906597,0.907457465280168,0.89694817844431,0,0,0,0.309157587715317,0.772921620136887,0,0.506328996723799,0.389748020644795,0.504867548488229,0.368199594569197,0.646584227275248,0.355009592516614,0.302256294682921,0.169560592310488,1.93260853163297,1.36373060295417,0.860413786167011,0.121973706129595,0.265059536642971,0.348581828608555,0.207322110030741,0.252320850875628,0,1.56449532329816,1.28648187638577,0,0.464367928031979,0.721879481669586,0.118306800039844,1.01150814046861,0.482022059766964,0.441175890929576,0.653638332277218,0.474541238222193,0.404493924480493,0.392442930250692,0,0,4.20725321410337,0.8231480226628,0,0,0,0,0.441463099414651,0.737930631258681,0,1.64625428112938,3.37205259772859,0.904760751704678,0.833296006426766,1.3032332212413,1.03993478527958,0,0.34779121492523,1.17408694235822,0.866198686566443,1.38895653772983,1.71228737011138,0.790204397959275,0,0.246217006087397,0,0.743155811443641,0.93733833986777,0.503946384596579,0.708875486211932,0.53735113621709,0.290633938513962,1.15014803749563,0,0.264145302039678,0,0.432359860250884,0.6312121671319,0.190493682876507,0.381988425558278,1.17217447210047,0,0.514137463516618,0.300343057843917,0,2.13049060256185,0.87192013766656,1.98013371716565,0.387815147273333,0,0.845302752556,1.59562869950922,2.08014873822732,1.02882949704857,0,1.0656887160644,0.714889968290738,0,1.64648067356154,0.65147236858747,1.42156779497018,0,1.20575750823834,0,0.899756920638513,0,0,2.10833939483032,0.479249710983165,1.14861935834114,0,0.723906533337896,1.02738161275192,0.358121926479791,0.336255431980582,0.394061520403854,0.215627574859517,0.513372145118994,0.76228387266739,0,0,0.837581326671744,1.27587750330633,0,0,0.414415513436035,0.12269149171914,0,0.271265023699736,0.207970861530807,0,0.315404830067869,0.702848489956279,0.300946099727719,4.5481500811197,0,0,0.921845842708516,0.868836144680828,1.17480694477644,1.02943027143257,0.620304078368662,0.215714200818617,0.213455115606889,1.21251028578504,1.66435439510497,0.302390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| |||
|short_description=p4@SMCR7L | |||
}} |
Latest revision as of 18:51, 24 September 2015
Short description: | p4@SMCR7L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SMCR7L_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000478342, ENST00000481746_5end |
EntrezGene: | SMCR7L |
HGNC: | 25979 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.49e-12 | 24 |
endothelial cell | 3.00e-11 | 36 |
meso-epithelial cell | 1.97e-10 | 45 |
blood vessel endothelial cell | 2.44e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.44e-10 | 18 |
endothelial cell of artery | 2.02e-08 | 9 |
lining cell | 2.47e-08 | 58 |
barrier cell | 2.47e-08 | 58 |
mesodermal cell | 4.20e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 2.44e-10 | 18 |
endothelium | 2.44e-10 | 18 |
cardiovascular system endothelium | 2.44e-10 | 18 |
simple squamous epithelium | 2.71e-10 | 22 |
vessel | 3.61e-10 | 68 |
squamous epithelium | 1.03e-09 | 25 |
vasculature | 1.21e-09 | 78 |
vascular system | 1.21e-09 | 78 |
splanchnic layer of lateral plate mesoderm | 1.77e-09 | 83 |
endothelial tube | 2.02e-08 | 9 |
arterial system endothelium | 2.02e-08 | 9 |
endothelium of artery | 2.02e-08 | 9 |
cardiovascular system | 3.76e-08 | 109 |
epithelial tube open at both ends | 1.05e-07 | 59 |
blood vessel | 1.05e-07 | 59 |
blood vasculature | 1.05e-07 | 59 |
vascular cord | 1.05e-07 | 59 |
circulatory system | 1.31e-07 | 112 |