FFCP PHASE1:Hg19::chr7:102574792..102574816,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr7:102574792..102574816,+
|short_description=p5@LRRC17
|description=CAGE_peak_5_at_LRRC17_5end
|association_with_transcript=431bp_to_EU832314,EU832399_5end
|...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10234 | |EntrezGene=10234 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=16895 | |HGNC=16895 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=431bp_to_EU832314,EU832399_5end | |||
|cluster_id=chr7:102574792..102574816,+ | |||
|description=CAGE_peak_5_at_LRRC17_5end | |||
|id=chr7:102574792..102574816,+ | |||
|ontology_enrichment_celltype=CL:0000680!2.46e-21!57;CL:0000056!2.46e-21!57;CL:0000355!2.46e-21!57;CL:0000187!7.79e-20!54;CL:0000183!2.66e-17!59;CL:0000393!7.56e-17!60;CL:0000211!7.56e-17!60;CL:0000055!8.57e-16!180;CL:0000192!5.83e-15!42;CL:0000514!5.83e-15!42;CL:0002494!3.79e-14!16;CL:0000359!3.27e-10!32;CL:0002539!1.52e-07!10 | |||
|ontology_enrichment_celltype_v019=CL:0000064;4.64e-22;3!CL:0000067;4.64e-22;3!CL:0005012;4.64e-22;3!CL:0002304;4.64e-22;3!CL:0000342;2.20e-08;1!CL:0002565;2.20e-08;1!CL:0002494;1.83e-07;16!CL:0002539;5.60e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000064,3.49e-22,3;CL:0000067,3.49e-22,3;CL:0005012,3.49e-22,3;CL:0002304,3.49e-22,3;CL:0000342,4.07e-08,1;CL:0002565,4.07e-08,1;CL:0000192,1.77e-07,43;CL:0000514,1.77e-07,43;CL:0002494,1.85e-07,16;CL:0000187,2.18e-07,55;CL:0002539,4.37e-07,10;CL:0000680,6.01e-07,58;CL:0000056,6.01e-07,58;CL:0000355,6.01e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.54e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.98e-12;14!DOID:0060084;4.69e-11;3!DOID:127;4.69e-11;3!DOID:0060072;1.68e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.53e-12,14;DOID:0060084,4.59e-11,3;DOID:127,4.59e-11,3;DOID:0060072,1.65e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0001134!3.17e-19!61;UBERON:0002036!3.17e-19!61;UBERON:0003082!3.17e-19!61;UBERON:0002385!2.82e-18!63;UBERON:0001015!2.82e-18!63;UBERON:0000383!2.82e-18!63;UBERON:0000914!2.80e-16!83;UBERON:0002329!2.80e-16!83;UBERON:0003077!2.80e-16!83;UBERON:0003059!2.80e-16!83;UBERON:0007282!2.80e-16!83;UBERON:0009618!2.80e-16!83;UBERON:0007285!2.80e-16!83;UBERON:0004290!2.10e-15!70;UBERON:0004872!1.53e-14!84;UBERON:0004573!2.23e-14!33;UBERON:0004571!2.23e-14!33;UBERON:0000948!2.46e-14!24;UBERON:0005498!2.46e-14!24;UBERON:0004140!2.46e-14!24;UBERON:0009881!2.46e-14!24;UBERON:0004141!2.46e-14!24;UBERON:0003084!2.46e-14!24;UBERON:0007005!2.46e-14!24;UBERON:0004139!2.46e-14!24;UBERON:0004291!2.46e-14!24;UBERON:0004535!4.81e-13!110;UBERON:0001009!2.24e-12!113;UBERON:0001637!2.93e-12!42;UBERON:0003509!2.93e-12!42;UBERON:0004572!2.93e-12!42;UBERON:0007100!3.49e-12!27;UBERON:0000486!1.08e-11!82;UBERON:0005256!1.76e-10!143;UBERON:0002049!1.31e-09!79;UBERON:0007798!1.31e-09!79;UBERON:0000490!4.57e-09!138;UBERON:0001135!5.35e-09!15;UBERON:0003914!7.49e-09!118;UBERON:0000481!8.93e-09!347;UBERON:0000947!1.35e-08!21;UBERON:0010191!1.35e-08!21;UBERON:0001981!1.66e-08!60;UBERON:0007500!1.66e-08!60;UBERON:0004537!1.66e-08!60;UBERON:0006965!1.66e-08!60;UBERON:0000119!8.57e-08!312;UBERON:0002050!8.97e-08!605;UBERON:0005423!8.97e-08!605;UBERON:0000922!9.20e-08!612;UBERON:0000488!1.09e-07!4;UBERON:0000483!1.36e-07!309;UBERON:0002100!1.43e-07!216;UBERON:0004237!1.52e-07!10;UBERON:0004695!1.52e-07!10;UBERON:0002111!1.52e-07!10;UBERON:0004178!1.52e-07!10;UBERON:0000923!2.18e-07!604;UBERON:0005291!2.18e-07!604;UBERON:0006598!2.18e-07!604;UBERON:0002532!2.18e-07!604;UBERON:0000475!8.06e-07!365;UBERON:0003103!9.40e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0000488;1.10e-28;4!UBERON:0001778;4.64e-22;3!UBERON:0001775;4.64e-22;3!UBERON:0002203;3.20e-19;6!UBERON:0001768;3.20e-19;6!UBERON:0002200;3.20e-19;6!UBERON:0007625;1.42e-10;11!UBERON:0006876;1.42e-10;11!UBERON:0002506;2.20e-08;1!UBERON:0001769;2.20e-08;1!UBERON:0001801;2.45e-08;14!UBERON:0002119;5.61e-08;4!UBERON:0004237;5.60e-07;10!UBERON:0004695;5.60e-07;10!UBERON:0002111;5.60e-07;10!UBERON:0004178;5.60e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000488,1.52e-28,4;UBERON:0001778,3.49e-22,3;UBERON:0001775,3.49e-22,3;UBERON:0002203,3.98e-19,6;UBERON:0001768,3.98e-19,6;UBERON:0002200,3.98e-19,6;UBERON:0007625,1.59e-10,11;UBERON:0006876,1.59e-10,11;UBERON:0004535,1.21e-08,109;UBERON:0001009,2.39e-08,112;UBERON:0001801,2.68e-08,14;UBERON:0002506,4.07e-08,1;UBERON:0001769,4.07e-08,1;UBERON:0002119,4.71e-08,4;UBERON:0002049,1.78e-07,78;UBERON:0007798,1.78e-07,78;UBERON:0004573,2.49e-07,33;UBERON:0004571,2.49e-07,33;UBERON:0004237,4.37e-07,10;UBERON:0004695,4.37e-07,10;UBERON:0002111,4.37e-07,10;UBERON:0004178,4.37e-07,10 | |||
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| ||
|short_description=p5@LRRC17 | |||
}} | }} |
Latest revision as of 19:18, 24 September 2015
Short description: | p5@LRRC17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_LRRC17_5end |
Coexpression cluster: | NA |
Association with transcript: | 431bp_to_EU832314, EU832399_5end |
EntrezGene: | LRRC17 |
HGNC: | 16895 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 3.49e-22 | 3 |
ciliated epithelial cell | 3.49e-22 | 3 |
multi-ciliated epithelial cell | 3.49e-22 | 3 |
non-pigmented ciliary epithelial cell | 3.49e-22 | 3 |
pigment cell (sensu Vertebrata) | 4.07e-08 | 1 |
iris pigment epithelial cell | 4.07e-08 | 1 |
smooth muscle cell | 1.77e-07 | 43 |
smooth muscle myoblast | 1.77e-07 | 43 |
cardiocyte | 1.85e-07 | 16 |
muscle cell | 2.18e-07 | 55 |
aortic smooth muscle cell | 4.37e-07 | 10 |
muscle precursor cell | 6.01e-07 | 58 |
myoblast | 6.01e-07 | 58 |
multi-potent skeletal muscle stem cell | 6.01e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
atypical epithelium | 1.52e-28 | 4 |
ciliary epithelium | 3.49e-22 | 3 |
ciliary body | 3.49e-22 | 3 |
vasculature of eye | 3.98e-19 | 6 |
uvea | 3.98e-19 | 6 |
vasculature of head | 3.98e-19 | 6 |
pigment epithelium of eye | 1.59e-10 | 11 |
vasculature of organ | 1.59e-10 | 11 |
cardiovascular system | 1.21e-08 | 109 |
circulatory system | 2.39e-08 | 112 |
anterior segment of eyeball | 2.68e-08 | 14 |
iris epithelium | 4.07e-08 | 1 |
iris | 4.07e-08 | 1 |
left ovary | 4.71e-08 | 4 |
vasculature | 1.78e-07 | 78 |
vascular system | 1.78e-07 | 78 |
systemic artery | 2.49e-07 | 33 |
systemic arterial system | 2.49e-07 | 33 |
blood vessel smooth muscle | 4.37e-07 | 10 |
arterial system smooth muscle | 4.37e-07 | 10 |
artery smooth muscle tissue | 4.37e-07 | 10 |
aorta smooth muscle tissue | 4.37e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.53e-12 | 14 |
cell type benign neoplasm | 4.59e-11 | 3 |
leiomyoma | 4.59e-11 | 3 |
benign neoplasm | 1.65e-08 | 4 |