FFCP PHASE1:Hg19::chr14:60194446..60194457,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6252 | |EntrezGene=6252 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10467 | |HGNC=10467 | ||
|TSSclassifier=strong | |||
|UniProt=Q16799 | |UniProt=Q16799 | ||
|association_with_transcript=-15bp_to_ENST00000432103,uc001xem.1_5end | |association_with_transcript=-15bp_to_ENST00000432103,uc001xem.1_5end | ||
|cluster_id=chr14:60194446..60194457,- | |||
|coexpression_cluster_id=C89 | |||
|description=CAGE_peak_16_at_RTN1_5end | |description=CAGE_peak_16_at_RTN1_5end | ||
|id=chr14:60194446..60194457,- | |id=chr14:60194446..60194457,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000082;6.95e-12;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000082,6.95e-12,19 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.67e-08;29!UBERON:0001041;4.53e-08;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:5409;3.10e-50;4!DOID:1325;1.78e-29;7!DOID:3904;1.78e-29;7!DOID:3905;2.62e-23;9!DOID:1324;1.22e-14;15!DOID:0050615;8.02e-14;16 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.10e-50,4;DOID:1325,1.78e-29,7;DOID:3904,1.78e-29,7;DOID:3905,2.62e-23,9;DOID:1324,1.22e-14,15;DOID:0050615,8.02e-14,16 | |||
|ontology_enrichment_uberon=UBERON:0003112!1.88e-19!1;UBERON:0000032!1.88e-19!1;UBERON:0005253!1.88e-19!1;UBERON:0003128!1.88e-19!1;UBERON:0002241!1.88e-19!1;UBERON:0001703!1.88e-19!1;UBERON:0004761!1.88e-19!1;UBERON:0009617!1.88e-19!1;UBERON:0002022!5.62e-19!1;UBERON:0002037!5.11e-13!6;UBERON:0006215!5.11e-13!6;UBERON:0007023!4.11e-12!115;UBERON:0001876!1.89e-10!2;UBERON:0002360!2.49e-10!2;UBERON:0000094!2.49e-10!2;UBERON:0007645!2.49e-10!2;UBERON:0001870!2.72e-10!2;UBERON:0001017!3.77e-10!82;UBERON:0005743!1.13e-09!86;UBERON:0002680!5.42e-09!9;UBERON:0001895!5.42e-09!9;UBERON:0010092!5.42e-09!9;UBERON:0000955!5.83e-09!69;UBERON:0006238!5.83e-09!69;UBERON:0000073!9.69e-09!94;UBERON:0001016!9.69e-09!94;UBERON:0001950!2.57e-08!20;UBERON:0001049!7.91e-08!57;UBERON:0005068!7.91e-08!57;UBERON:0006241!7.91e-08!57;UBERON:0007135!7.91e-08!57;UBERON:0002619!1.22e-07!22;UBERON:0002616!1.44e-07!59;UBERON:0003075!2.73e-07!86;UBERON:0007284!2.73e-07!86;UBERON:0004733!5.81e-07!12;UBERON:0002028!5.81e-07!12;UBERON:0007277!5.81e-07!12;UBERON:0002346!5.84e-07!90;UBERON:0000956!8.04e-07!25;UBERON:0000203!8.04e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004802;6.95e-12;19!UBERON:0000115;6.95e-12;19!UBERON:0002048;1.80e-10;22!UBERON:0004807;1.80e-10;22!UBERON:0000117;1.80e-10;22!UBERON:0000171;1.80e-10;22!UBERON:0000170;1.80e-10;22!UBERON:0005911;4.53e-08;36!UBERON:0005178;2.32e-07;34!UBERON:0000072;2.32e-07;37!UBERON:0005181;2.32e-07;35!UBERON:0002224;2.32e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004802,6.95e-12,19;UBERON:0000115,6.95e-12,19;UBERON:0002048,1.80e-10,22;UBERON:0000117,1.80e-10,22;UBERON:0000171,1.80e-10,22;UBERON:0000170,1.80e-10,22;UBERON:0005597,1.80e-10,22;UBERON:0000118,1.80e-10,22;UBERON:0004807,1.52e-08,28;UBERON:0005178,2.74e-07,34;UBERON:0002224,2.74e-07,34;UBERON:0005181,4.03e-07,35;UBERON:0005153,8.21e-07,37 | |||
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|short_description=p16@RTN1 | |short_description=p16@RTN1 | ||
}} | }} |
Latest revision as of 20:06, 24 September 2015
Short description: | p16@RTN1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_RTN1_5end |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | -15bp_to_ENST00000432103, uc001xem.1_5end |
EntrezGene: | RTN1 |
HGNC: | 10467 |
UniProt: | Q16799 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of lung | 6.95e-12 | 19 |
Ontology term | p-value | n |
---|---|---|
respiratory tract epithelium | 6.95e-12 | 19 |
lung epithelium | 6.95e-12 | 19 |
lung | 1.80e-10 | 22 |
respiratory tube | 1.80e-10 | 22 |
respiration organ | 1.80e-10 | 22 |
pair of lungs | 1.80e-10 | 22 |
lung primordium | 1.80e-10 | 22 |
lung bud | 1.80e-10 | 22 |
respiratory system epithelium | 1.52e-08 | 28 |
thoracic cavity element | 2.74e-07 | 34 |
thoracic cavity | 2.74e-07 | 34 |
thoracic segment organ | 4.03e-07 | 35 |
epithelial bud | 8.21e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.10e-50 | 4 |
bronchus cancer | 1.78e-29 | 7 |
bronchogenic carcinoma | 1.78e-29 | 7 |
lung carcinoma | 2.62e-23 | 9 |
lung cancer | 1.22e-14 | 15 |
respiratory system cancer | 8.02e-14 | 16 |