FFCP PHASE1:Hg19::chr9:124048375..124048390,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:124048375..124048390,+ to FFCP PHASE1:Hg19::chr9:124048375..124048390,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2934 | |EntrezGene=2934 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4620 | |HGNC=4620 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-10bp_to_ENST00000477104,uc011lyh.1_5end | |||
|cluster_id=chr9:124048375..124048390,+ | |||
|description=CAGE_peak_8_at_GSN_5end | |||
|id=chr9:124048375..124048390,+ | |||
|ontology_enrichment_celltype=CL:0002139!7.01e-15!24;CL:0000115!2.23e-14!35;CL:0000071!3.33e-11!18;CL:0002546!3.33e-11!18;CL:0002078!1.16e-09!44 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.99e-31;24!CL:0000071;5.83e-25;18!CL:0000115;1.99e-22;36!CL:0002078;3.16e-14;45!CL:1000413;3.89e-13;9!CL:0000213;1.15e-09;58!CL:0000215;1.15e-09;58!CL:0002543;1.45e-08;6!CL:0002544;3.36e-08;6!CL:0002138;7.10e-08;6!CL:0002618;5.68e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,2.51e-31,24;CL:0000115,9.46e-28,36;CL:0000071,4.21e-25,18;CL:0002546,4.21e-25,18;CL:0002078,1.30e-20,45;CL:0000213,2.68e-14,58;CL:0000215,2.68e-14,58;CL:1000413,3.45e-13,9;CL:0002543,1.17e-08,6;CL:0002544,2.73e-08,6;CL:0005020,8.11e-08,6;CL:0002138,8.11e-08,6;CL:0005022,8.11e-08,6;CL:0002618,4.73e-07,3 | |||
|ontology_enrichment_development_v019=CL:0002546;5.83e-25;18!CL:0005022;7.10e-08;6!UBERON:0004872;6.72e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.96e-21!115;UBERON:0001986!3.33e-11!18;UBERON:0004638!3.33e-11!18;UBERON:0004852!3.33e-11!18;UBERON:0000468!1.88e-10!659;UBERON:0000055!2.41e-10!69;UBERON:0002049!7.76e-10!79;UBERON:0007798!7.76e-10!79;UBERON:0000467!2.47e-09!625;UBERON:0000480!3.34e-09!626;UBERON:0001009!9.65e-09!113;UBERON:0000477!1.22e-08!286;UBERON:0004111!1.41e-08!241;UBERON:0004872!2.07e-08!84;UBERON:0001981!4.13e-08!60;UBERON:0007500!4.13e-08!60;UBERON:0004537!4.13e-08!60;UBERON:0006965!4.13e-08!60;UBERON:0000487!7.57e-08!22;UBERON:0004535!1.65e-07!110;UBERON:0006914!6.67e-07!25;UBERON:0000025!7.03e-07!194 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;5.83e-25;18!UBERON:0001986;5.83e-25;18!UBERON:0004852;5.83e-25;18!UBERON:0000487;1.56e-19;22!UBERON:0006914;1.29e-16;25!UBERON:0003915;3.89e-13;9!UBERON:0004700;3.89e-13;9!UBERON:0001917;3.89e-13;9!UBERON:0000490;2.22e-10;33!UBERON:0000055;4.24e-08;65!UBERON:0001638;1.11e-07;9!UBERON:0003920;1.11e-07;9!UBERON:0004582;1.11e-07;9!UBERON:0004151;7.91e-07;3!UBERON:0003978;8.54e-07;3!UBERON:0000946;8.54e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,4.21e-25,18;UBERON:0001986,4.21e-25,18;UBERON:0004852,4.21e-25,18;UBERON:0000487,1.21e-19,22;UBERON:0006914,1.04e-16,25;UBERON:0000055,1.33e-14,68;UBERON:0007023,1.90e-14,114;UBERON:0003915,3.45e-13,9;UBERON:0004700,3.45e-13,9;UBERON:0001917,3.45e-13,9;UBERON:0004872,7.96e-12,83;UBERON:0002049,1.04e-11,78;UBERON:0007798,1.04e-11,78;UBERON:0001009,1.37e-11,112;UBERON:0007500,2.68e-11,59;UBERON:0001981,2.68e-11,59;UBERON:0004537,2.68e-11,59;UBERON:0006965,2.68e-11,59;UBERON:0004535,2.35e-09,109;UBERON:0003914,9.61e-09,117;UBERON:0001638,9.58e-08,9;UBERON:0003920,9.58e-08,9;UBERON:0004582,9.58e-08,9;UBERON:0004111,1.29e-07,240;UBERON:0003978,7.28e-07,3;UBERON:0009751,7.28e-07,3;UBERON:0004151,7.28e-07,3;UBERON:0000946,7.28e-07,3;UBERON:0002523,7.28e-07,3;UBERON:0005983,7.28e-07,3;UBERON:0002165,7.28e-07,3;UBERON:0002062,7.28e-07,3;UBERON:0007280,7.28e-07,3 | |||
|phase1_expression=0.363356758541113,0.856402095563933,0.563817616383885,1.0007329835313,0,0,0,0,0,0,0,0,0,0.123766352960047,0.331397375727916,0.672325146451775,0,0,0.975865597581014,0.123121058076788,0.408001382488506,0,0,0.410623275218653,0,0,0,0,0,0.383829398097213,0,0,0.6024118375565,0,0,0,0.293600439334847,0,0,0,0.223915474239924,0.647787332037959,0.515151135268373,0,0,0.242584061187816,0.929716147622738,1.23350366406548,1.85823822537062,0.863077176966451,0.256160706529101,0.236482229888585,1.72372840368309,0.645484683583826,0,0.188242339542605,0,0.674170453335254,0.612167784741805,0.641858054152187,0,0,0,0,0,0,0.622822248995575,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767175371061182,0.361439152384566,0,0.144846518960824,0,0,0.0945348171640679,0,0.351339142772504,0.654895377488563,0,0,0,0.348259474598534,0.664789802594326,0,0,0,3.9752481473341,3.4409383804245,4.85996702250632,6.78369530308812,4.19499436209906,4.67700671298115,3.34391946458897,10.0782536076038,10.6729878806013,2.34304428935269,3.62546385398232,2.28081631715554,6.34561349625241,2.57364156242108,0,4.82218532734031,7.63399866928977,4.84229366078286,0,3.79706263827252,5.49605231791222,0,0,0,0,0.12663051166458,0.264818361626438,0,0,0,0,0,0.622422070799533,0.67355336034844,2.12500474047496,0.151357427644931,0,0,0,0.570471821544449,0,0.469737994575059,0.485618833104395,0.280901613404497,0.204154171254893,0.491337269247072,0.309977343527296,0,0,0,0.718618141816238,0.168336113954066,0.125118519871964,0,0,0.30648779579902,0.150238058906597,0.794025282120147,0.538168907066586,0,0,0.900273288253207,0.103052529238439,0,0.37223371266318,0.168776332241266,0.292311015483596,0.504867548488229,0,0.161646056818812,0.710019185033229,0.201504196455281,0.339121184620975,0.193260853163297,0,0,0,0,0,0,0,0,0,0.643240938192885,0,1.39310378409594,1.44375896333917,0.118306800039844,0,0,0,0,0,0.134831308160164,0,0,14.763109092493,0,0,0,0,0,0.590789906681404,0,0,0.343135620597051,0.109750285408626,0,0,0.0925884451585296,0,0,0,0,0,1.58803092537181,0.462985512576611,1.14152491340759,0,0,0.246217006087397,0.702012795417713,0.445893486866185,0,0,0,0.0895585227028483,0,0,0.492663237895943,0,0.207328115540772,1.29707958075265,0.12624243342638,0,0,0,0,0.308482478109971,0,0,0.112131084345361,0,0.07333828582095,0.129271715757778,0,0.845302752556,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0.325736184293735,0,0,0.301439377059586,0,0,0,0,0,0.239624855491583,0,0,0,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0.178428988797162,0.315404830067869,0.117141414992713,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0.496215615637554,0.767309866440312,0,0.512556597022804,0,0,2.96836132889982,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0.105551628892876,6.8240030442538,2.89159298970077,0.431831832204279,1.54227252690289,0,0,0,0,0,0,0,1.28225062558195,0.984043937099117,1.62689197332152,0.618246069886334,0,0.247528499761764,0,0,0,0.193341436584244,0,0.307007349452259,0.275673144969061,0,0.290033387828457,0.170453254832202,1.24644849905432,0.165284915360978,0,0,0,0,0,0,0.308033580176089,0,0,0.55597265731176,0.286249773483982,0.372158369359667,0,0.190630193923825,0.255897791311334,0,0,0,0.179872457583315,0,0,0,0,0,0.48763373908959,0,0,0,0,0,1.10273068709225,0,0.438450885253763,1.15755106853338,0,0.405820753925408,0.30982349809975,0.845086807596724,0.430234056612155,0.491245205065606,0,0,0.422215270595328,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0.238231775457789,0,0,0,0,0.106824071127473,0.962479855263359,0,0,0.144269212976445,0,0,1.39705560002972,1.53204296105893,4.86849240264931,5.19395104439289,0.280797178113459,2.28234679033192,0,7.51903431270201,7.44883822327054,0,0,0,2.06103206853459,0.614481528616916,2.23676107892416,0.834245708559542,1.17232857241224,0.556812347790485,0,0.811367035427949,7.32758329595204,0,0,3.66270448179735,0,0,0,0.23874448473769,0,0.307160702099232,0.994147647766298,0.281338832821026,0,0,0,1.19548792950642,0.828851746593443,0,0.102268682502155,0,0.311039587661807,0,0,0,1.1837208676432,0,0,0,0.278304294485554,0,0,0,5.07499702804355,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0.438770794307945,0,0,1.84680620409113,0,0,0,0,0,0,0,0,2.19772358953035,0,0,0,0,0,0.158936578980379,0,0.163232808159148,0,0,0,0.707660516026713,0,0,0,0,0.269604531922708,9.63093176758547,0.234264445725339,0,0,0.242780379534093,1.57833761139756,2.41981432097328,0,0.821425535170343,0,0,0,0.330991955875499,0,0,0,0,0.347119476670262,0,0,1.7472666824203,0,0,0,0,1.26085721434945,0,5.42353777873278,0,0.19871461170299,0,0,0,1.92107695265417,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0.136905378891993,0,0,0,9.21631924198439,4.81236890424536,2.87149209830726,4.79229601197579,9.87219910714113,7.36465809558179,6.31524641375227,0.360299883542404,0,0,0,0,0,0,0,0.681017030557878,0,0,0,1.799791132412,9.2856234546954,0.242998226632099,0,1.33969702408637,0.4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| ||
|short_description=p8@GSN | |||
}} | }} |
Latest revision as of 20:42, 24 September 2015
Short description: | p8@GSN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_GSN_5end |
Coexpression cluster: | NA |
Association with transcript: | -10bp_to_ENST00000477104, uc011lyh.1_5end |
EntrezGene: | GSN |
HGNC: | 4620 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 2.51e-31 | 24 |
endothelial cell | 9.46e-28 | 36 |
blood vessel endothelial cell | 4.21e-25 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.21e-25 | 18 |
meso-epithelial cell | 1.30e-20 | 45 |
lining cell | 2.68e-14 | 58 |
barrier cell | 2.68e-14 | 58 |
endothelial cell of artery | 3.45e-13 | 9 |
vein endothelial cell | 1.17e-08 | 6 |
aortic endothelial cell | 2.73e-08 | 6 |
lymphangioblast | 8.11e-08 | 6 |
endothelial cell of lymphatic vessel | 8.11e-08 | 6 |
vascular lymphangioblast | 8.11e-08 | 6 |
endothelial cell of umbilical vein | 4.73e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 4.21e-25 | 18 |
endothelium | 4.21e-25 | 18 |
cardiovascular system endothelium | 4.21e-25 | 18 |
simple squamous epithelium | 1.21e-19 | 22 |
squamous epithelium | 1.04e-16 | 25 |
vessel | 1.33e-14 | 68 |
adult organism | 1.90e-14 | 114 |
endothelial tube | 3.45e-13 | 9 |
arterial system endothelium | 3.45e-13 | 9 |
endothelium of artery | 3.45e-13 | 9 |
splanchnic layer of lateral plate mesoderm | 7.96e-12 | 83 |
vasculature | 1.04e-11 | 78 |
vascular system | 1.04e-11 | 78 |
circulatory system | 1.37e-11 | 112 |
epithelial tube open at both ends | 2.68e-11 | 59 |
blood vessel | 2.68e-11 | 59 |
blood vasculature | 2.68e-11 | 59 |
vascular cord | 2.68e-11 | 59 |
cardiovascular system | 2.35e-09 | 109 |
epithelial tube | 9.61e-09 | 117 |
vein | 9.58e-08 | 9 |
venous blood vessel | 9.58e-08 | 9 |
venous system | 9.58e-08 | 9 |
anatomical conduit | 1.29e-07 | 240 |
valve | 7.28e-07 | 3 |
cardiac mesenchyme | 7.28e-07 | 3 |
cardiac chamber | 7.28e-07 | 3 |
cardial valve | 7.28e-07 | 3 |
tunica intima | 7.28e-07 | 3 |
heart layer | 7.28e-07 | 3 |
endocardium | 7.28e-07 | 3 |
endocardial cushion | 7.28e-07 | 3 |
presumptive endocardium | 7.28e-07 | 3 |