FFCP PHASE1:Hg19::chr4:128981954..128981979,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55132 | |EntrezGene=55132 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24704 | |HGNC=24704 | ||
|TSSclassifier=strong | |||
|UniProt=Q659C4 | |UniProt=Q659C4 | ||
|association_with_transcript=-443bp_to_ENST00000326639_5end | |association_with_transcript=-443bp_to_ENST00000326639_5end | ||
|cluster_id=chr4:128981954..128981979,+ | |||
|description=CAGE_peak_4_at_LARP1B_5end | |description=CAGE_peak_4_at_LARP1B_5end | ||
|id=chr4:128981954..128981979,+ | |id=chr4:128981954..128981979,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.13e-13!254;CL:0000223!3.21e-13!59;CL:0002076!2.24e-09!43;CL:0000039!6.76e-09!7;CL:0000586!6.76e-09!7 | |ontology_enrichment_celltype=CL:0000066!3.13e-13!254;CL:0000223!3.21e-13!59;CL:0002076!2.24e-09!43;CL:0000039!6.76e-09!7;CL:0000586!6.76e-09!7 | ||
|ontology_enrichment_celltype_v019=CL:0000182;5.89e-17;12!CL:0000039;1.15e-13;7!CL:0000586;1.15e-13;7!CL:0000167;5.28e-07;1!CL:0000164;5.28e-07;1!CL:0000502;5.28e-07;1!CL:0000172;5.28e-07;1!CL:0000173;5.28e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,4.17e-17,12;CL:0000039,2.53e-13,7;CL:0000586,2.53e-13,7;CL:0000223,4.57e-10,58;CL:0000167,6.88e-07,1;CL:0000164,6.88e-07,1;CL:0000502,6.88e-07,1;CL:0000172,6.88e-07,1;CL:0000173,6.88e-07,1;CL:0002351,6.88e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.53e-13;11!UBERON:0009497;5.03e-11;13!UBERON:0003104;2.36e-08;31!UBERON:0008801;1.69e-07;1!CL:0002351;5.28e-07;1!UBERON:0003124;5.28e-07;1 | |||
|ontology_enrichment_disease=DOID:305!1.49e-23!106;DOID:0050687!7.12e-18!143;DOID:162!7.29e-09!235;DOID:14566!2.88e-08!239;DOID:299!6.70e-08!25 | |ontology_enrichment_disease=DOID:305!1.49e-23!106;DOID:0050687!7.12e-18!143;DOID:162!7.29e-09!235;DOID:14566!2.88e-08!239;DOID:299!6.70e-08!25 | ||
|ontology_enrichment_disease_v019=DOID:299;7.86e-08;25!DOID:3111;5.28e-07;1!DOID:3603;5.28e-07;1!DOID:4430;5.28e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,4.99e-08,143;DOID:305,8.28e-08,106;DOID:299,9.18e-08,25;DOID:3111,4.31e-07,1;DOID:3603,4.31e-07,1;DOID:4430,6.88e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.40e-18!169;UBERON:0000925!1.40e-18!169;UBERON:0006595!1.40e-18!169;UBERON:0001007!2.16e-17!155;UBERON:0001555!2.16e-17!155;UBERON:0007026!2.16e-17!155;UBERON:0004921!2.61e-16!129;UBERON:0004185!2.61e-16!129;UBERON:0000077!1.97e-12!130;UBERON:0001041!2.73e-11!98;UBERON:0000466!3.15e-10!126;UBERON:0005911!3.53e-10!82;UBERON:0001004!2.47e-09!72;UBERON:0000464!1.45e-07!104;UBERON:0005177!2.40e-07!107;UBERON:0005156!4.32e-07!59;UBERON:0000990!4.32e-07!59;UBERON:0008947!5.41e-07!38;UBERON:0003258!5.41e-07!38;UBERON:0002530!5.89e-07!59 | |ontology_enrichment_uberon=UBERON:0004119!1.40e-18!169;UBERON:0000925!1.40e-18!169;UBERON:0006595!1.40e-18!169;UBERON:0001007!2.16e-17!155;UBERON:0001555!2.16e-17!155;UBERON:0007026!2.16e-17!155;UBERON:0004921!2.61e-16!129;UBERON:0004185!2.61e-16!129;UBERON:0000077!1.97e-12!130;UBERON:0001041!2.73e-11!98;UBERON:0000466!3.15e-10!126;UBERON:0005911!3.53e-10!82;UBERON:0001004!2.47e-09!72;UBERON:0000464!1.45e-07!104;UBERON:0005177!2.40e-07!107;UBERON:0005156!4.32e-07!59;UBERON:0000990!4.32e-07!59;UBERON:0008947!5.41e-07!38;UBERON:0003258!5.41e-07!38;UBERON:0002530!5.89e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;3.14e-14;19!UBERON:0006925;3.14e-14;19!UBERON:0002365;7.64e-11;31!UBERON:0002330;7.64e-11;31!UBERON:0002423;1.34e-10;25!UBERON:0003135;1.33e-08;11!UBERON:0006947;1.61e-08;3!UBERON:0004054;1.61e-08;3!UBERON:0001831;1.69e-07;1!UBERON:0001567;1.69e-07;1!UBERON:0001000;5.28e-07;1!UBERON:0001301;5.28e-07;1!UBERON:0005352;5.28e-07;1!UBERON:0002368;7.59e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.37e-14,19;UBERON:0006925,2.37e-14,19;UBERON:0008836,2.37e-14,19;UBERON:0008835,2.84e-12,22;UBERON:0003894,2.84e-12,22;UBERON:0009854,1.06e-11,23;UBERON:0002365,4.82e-11,31;UBERON:0002330,4.82e-11,31;UBERON:0007499,1.08e-10,25;UBERON:0009497,1.08e-10,25;UBERON:0000015,1.08e-10,25;UBERON:0002423,1.08e-10,25;UBERON:0006235,1.08e-10,25;UBERON:0004161,1.08e-10,25;UBERON:0009856,3.03e-10,26;UBERON:0006947,1.50e-08,3;UBERON:0004054,1.50e-08,3;UBERON:0003135,1.70e-08,11;UBERON:0001831,1.55e-07,1;UBERON:0001567,1.55e-07,1;UBERON:0008801,1.55e-07,1;UBERON:0002368,2.23e-07,35;UBERON:0005172,2.86e-07,54;UBERON:0005173,2.86e-07,54;UBERON:0000949,3.18e-07,45;UBERON:0001301,4.57e-07,1;UBERON:0001000,5.45e-07,1;UBERON:0005352,5.45e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0.236132343941038,0,0,0,0,0,0.739508020333575,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.75996244461323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0.164437904603676,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.272746120590835,0.286804595389004,0.731842236777572,0.662648841607426,0.232387885739037,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0,0,0.241011029883482,0.110293972732394,0,0,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,6.33775174109154,0.982827216677626,1.18157981336281,0,0.245976877086227,0,0.109750285408626,0,0.301586917234893,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0.93733833986777,0,0.425325291727159,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0.736647911487171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.768760269460425,0.127612712494584,1.51736671283325,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,1.08890984861323,1.31801321087491,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.106824071127473,0,0.490080431962063,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05854594449042,0,0,0,0.284136146806413,0.47748896947538,0.296964680832639,0,0,0,0,0,0,0.19924798825107,0,0.503865495708552,0,0.246169610922139,0,0.359473404589307,0,0,0,0,0,0,0,0,1.04171104434093,0.262379999988587,0,0.227586896570999,0.508507300585533,0.472775363535873,0.344743373241465,0,0,0,0.241192877250816,0,0,0,0,0,0.278847488557207,0.0769502585037971,0,0.46112780877612,2.15418346583453,1.08647371922008,1.27600463892768,0,0,0,0,0,0,0,0,0.189753732724185,0.158936578980379,0.210998064528027,0.163232808159148,1.13082457147153,0,0,0.265372693510018,0.611030144933625,0.296521128680622,0,0,0,0,0,0,0,0,1.18375320854817,0,0,0.126373159256976,0.60129367765797,0.103688191397247,0,0,0,0,0.284609546029793,0,0.173559738335131,0.195984794828755,0.609414446062818,1.22308667769421,0,0.0967563312890851,0.0730893170861856,0.164230914106418,0.0969890164884194,0,0,0,0,0.253243183823515,0.195551382734803,0,0.640358984218058,0,3.45817001169854,0,0.171594997861965,0,0,0.235694034616795,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0.399358000997982,0,0,0,0,2.32991899054908,1.18174773460835,1.40106959247983,1.88729922791718,0,0,0,0.272406812223151,1.12527203925513,0.550157746388935,0.83088067605837,0,0,0.0607495566580247,0,1.18208560948797,0.472091293214983,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,2.63794020620548,0,0.258565912723101,0.13223260174269,1.19760786519031,0.704815022316672,0.427149650270779,0.314408610199332,0,0,0,0.121792598380896,0,0,0,0,0,0.785270481251171,0,0,0,0,0.443716206147409,0.124192805882767,0,0.124980407962107,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.322231671127465,0,0,0,0,0,0,0,0.643324774124777,0.260994291965212,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,1.26787274015176,0,0.106691729694141,0,0,0,1.11903606175556,0,0,0.107824811396682,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0.0691572524642179,0,0,1.96295437002051,0.707818340086442,0.183428598521679,0,0,0,0,0.0752103283492573,0,3.12605604493237,0.523813388962845,0,0.147856086217045,0,0,0,0,0,3.83780436800028,0,0,0.894336993477167,0,0.336283722218824,0.606965604236632,0.91064876540519,1.41923792260222,0.230467975111559,0,0.0679697329768317,0,0.354581522651905,0.111231401892069,0.235479278551542,0,0.560544326627578,0,0,0,0,0,0.23248285073625,0,0,0,0.17071847709395,0,0.860454717640555,0,0,0.423387050190929,0.68732060563215,0,0,0.335566295393377,0.098150233615243,1.21917924982269,0.647428837187895,0,0,0,0.701818390386317,0.198950775161368,0,0.11294608203896,0.109940516745429,0.905777061400041,1.46630900405095,0.874238242015829,0,0,1.17838273550813,0,0,0,0,0.187967835959707,0.128915775947154,0.0999411559249289,0,0,0.240724100067505,0.730336388246517,0.917458566809082,0.143339583151451,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0.109265571963696,0,3.05966489225945,0.534434810531121,0.643264296743914,1.0028301571695,0,0.267964130156178,0,0.103432995861895,0,0,0,0.0620747142958579,0,0.572824424503484,0.404234377916439,0,0,0.0673520530145875,0.573777643141411,0,0.325613074443898,0.106727345877715,0,0.269475606319761,0,0,0,0.665756774185513,0,0 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| ||
|short_description=p4@LARP1B | |short_description=p4@LARP1B | ||
}} | }} |
Latest revision as of 02:43, 25 September 2015
Short description: | p4@LARP1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LARP1B_5end |
Coexpression cluster: | NA |
Association with transcript: | -443bp_to_ENST00000326639_5end |
EntrezGene: | LARP1B |
HGNC: | 24704 |
UniProt: | Q659C4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 4.17e-17 | 12 |
germ line cell | 2.53e-13 | 7 |
germ cell | 2.53e-13 | 7 |
endodermal cell | 4.57e-10 | 58 |
peptide hormone secreting cell | 6.88e-07 | 1 |
enteroendocrine cell | 6.88e-07 | 1 |
type D enteroendocrine cell | 6.88e-07 | 1 |
somatostatin secreting cell | 6.88e-07 | 1 |
pancreatic D cell | 6.88e-07 | 1 |
progenitor cell of endocrine pancreas | 6.88e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
liver | 2.37e-14 | 19 |
digestive gland | 2.37e-14 | 19 |
liver bud | 2.37e-14 | 19 |
hepatic diverticulum | 2.84e-12 | 22 |
liver primordium | 2.84e-12 | 22 |
digestive tract diverticulum | 1.06e-11 | 23 |
exocrine gland | 4.82e-11 | 31 |
exocrine system | 4.82e-11 | 31 |
epithelial sac | 1.08e-10 | 25 |
epithelium of foregut-midgut junction | 1.08e-10 | 25 |
anatomical boundary | 1.08e-10 | 25 |
hepatobiliary system | 1.08e-10 | 25 |
foregut-midgut junction | 1.08e-10 | 25 |
septum transversum | 1.08e-10 | 25 |
sac | 3.03e-10 | 26 |
male genital duct | 1.50e-08 | 3 |
internal male genitalia | 1.50e-08 | 3 |
male reproductive organ | 1.70e-08 | 11 |
parotid gland | 1.55e-07 | 1 |
cheek | 1.55e-07 | 1 |
parotid gland primordium | 1.55e-07 | 1 |
endocrine gland | 2.23e-07 | 35 |
abdomen element | 2.86e-07 | 54 |
abdominal segment element | 2.86e-07 | 54 |
endocrine system | 3.18e-07 | 45 |
epididymis | 4.57e-07 | 1 |
vas deferens | 5.45e-07 | 1 |
spermatic cord | 5.45e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 4.99e-08 | 143 |
carcinoma | 8.28e-08 | 106 |
adenocarcinoma | 9.18e-08 | 25 |
cystadenocarcinoma | 4.31e-07 | 1 |
mucinous cystadenocarcinoma | 4.31e-07 | 1 |
somatostatinoma | 6.88e-07 | 1 |