FFCP PHASE1:Hg19::chr19:11071652..11071682,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6597 | |EntrezGene=6597 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11100 | |HGNC=11100 | ||
|TSSclassifier=strong | |||
|UniProt=P51532 | |UniProt=P51532 | ||
|association_with_transcript=0bp_to_ENST00000344626_5end | |association_with_transcript=0bp_to_ENST00000344626_5end | ||
|cluster_id=chr19:11071652..11071682,+ | |||
|description=CAGE_peak_3_at_SMARCA4_5end | |description=CAGE_peak_3_at_SMARCA4_5end | ||
|id=chr19:11071652..11071682,+ | |id=chr19:11071652..11071682,+ | ||
Latest revision as of 03:56, 25 September 2015
| Short description: | p3@SMARCA4 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_3_at_SMARCA4_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000344626_5end |
| EntrezGene: | SMARCA4 |
| HGNC: | 11100 |
| UniProt: | P51532 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p3@SMARCA4 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 4.51e-08 | 253 |
| migratory neural crest cell | 2.23e-07 | 41 |
| embryonic cell | 2.86e-07 | 250 |
Showing 1 to 3 of 3 entries
| Ontology term | p-value | n |
|---|---|---|
| ectoderm-derived structure | 3.82e-09 | 171 |
| ectoderm | 3.82e-09 | 171 |
| presumptive ectoderm | 3.82e-09 | 171 |
| cell layer | 1.03e-08 | 309 |
| nervous system | 1.67e-08 | 89 |
| epithelium | 2.09e-08 | 306 |
| central nervous system | 2.54e-07 | 81 |
| brain | 8.61e-07 | 68 |
| future brain | 8.61e-07 | 68 |
| ecto-epithelium | 9.44e-07 | 104 |
Showing 1 to 10 of 10 entries
| Ontology term | p-value | n |
|---|---|---|
| cancer | 7.04e-12 | 235 |
| disease of cellular proliferation | 3.24e-11 | 239 |
| hematologic cancer | 1.42e-08 | 51 |
| immune system cancer | 1.42e-08 | 51 |
| leukemia | 6.37e-08 | 39 |
| organ system cancer | 1.28e-07 | 137 |
| myeloid leukemia | 9.19e-07 | 31 |
Showing 1 to 7 of 7 entries
