FFCP PHASE1:Hg19::chr14:68189203..68189220,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=145226 | |EntrezGene=145226 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19977 | |HGNC=19977 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=13bp_to_ENST00000539142_5end | |association_with_transcript=13bp_to_ENST00000539142_5end | ||
|cluster_id=chr14:68189203..68189220,+ | |||
|coexpression_cluster_id=C40 | |coexpression_cluster_id=C40 | ||
|description=CAGE_peak_1_at_RDH12_5end | |description=CAGE_peak_1_at_RDH12_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0001014;2.99e-13;2!CL:0001016;2.99e-13;2!CL:0002252;1.89e-07;1 | |ontology_enrichment_celltype_v019=CL:0001014;2.99e-13;2!CL:0001016;2.99e-13;2!CL:0002252;1.89e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0001014,2.34e-13,2;CL:0001016,2.34e-13,2;CL:0002252,2.21e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0006242;7.50e-08;1!UBERON:0009143;1.89e-07;1!UBERON:0006222;3.61e-07;1 | |ontology_enrichment_development_v019=UBERON:0006242;7.50e-08;1!UBERON:0009143;1.89e-07;1!UBERON:0006222;3.61e-07;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.22e-30!115;UBERON:0001049!4.72e-28!57;UBERON:0005068!4.72e-28!57;UBERON:0006241!4.72e-28!57;UBERON:0007135!4.72e-28!57;UBERON:0001017!9.07e-23!82;UBERON:0005743!1.26e-22!86;UBERON:0002616!7.34e-22!59;UBERON:0000955!9.68e-22!69;UBERON:0006238!9.68e-22!69;UBERON:0003075!5.48e-21!86;UBERON:0007284!5.48e-21!86;UBERON:0002780!5.64e-21!41;UBERON:0001890!5.64e-21!41;UBERON:0006240!5.64e-21!41;UBERON:0000073!1.90e-20!94;UBERON:0001016!1.90e-20!94;UBERON:0003080!2.75e-20!42;UBERON:0002346!1.70e-19!90;UBERON:0000153!2.66e-18!129;UBERON:0007811!2.66e-18!129;UBERON:0003056!1.57e-16!61;UBERON:0004121!3.96e-16!169;UBERON:0000033!4.97e-16!123;UBERON:0000924!2.19e-15!173;UBERON:0006601!2.19e-15!173;UBERON:0002020!2.96e-13!34;UBERON:0003528!2.96e-13!34;UBERON:0001893!3.42e-13!34;UBERON:0001869!9.61e-13!32;UBERON:0002791!3.70e-12!33;UBERON:0001894!2.44e-11!7;UBERON:0006222!2.44e-11!7;UBERON:0002619!2.95e-09!22;UBERON:0003076!6.52e-09!15;UBERON:0003057!6.52e-09!15;UBERON:0000475!2.24e-08!365;UBERON:0000956!8.44e-08!25;UBERON:0000203!8.44e-08!25;UBERON:0002308!1.07e-07!9;UBERON:0000125!1.07e-07!9;UBERON:0003296!2.22e-07!4;UBERON:0010133!2.22e-07!4;UBERON:0001950!3.47e-07!20;UBERON:0000200!8.90e-07!6;UBERON:0000483!9.24e-07!309 | |ontology_enrichment_uberon=UBERON:0007023!1.22e-30!115;UBERON:0001049!4.72e-28!57;UBERON:0005068!4.72e-28!57;UBERON:0006241!4.72e-28!57;UBERON:0007135!4.72e-28!57;UBERON:0001017!9.07e-23!82;UBERON:0005743!1.26e-22!86;UBERON:0002616!7.34e-22!59;UBERON:0000955!9.68e-22!69;UBERON:0006238!9.68e-22!69;UBERON:0003075!5.48e-21!86;UBERON:0007284!5.48e-21!86;UBERON:0002780!5.64e-21!41;UBERON:0001890!5.64e-21!41;UBERON:0006240!5.64e-21!41;UBERON:0000073!1.90e-20!94;UBERON:0001016!1.90e-20!94;UBERON:0003080!2.75e-20!42;UBERON:0002346!1.70e-19!90;UBERON:0000153!2.66e-18!129;UBERON:0007811!2.66e-18!129;UBERON:0003056!1.57e-16!61;UBERON:0004121!3.96e-16!169;UBERON:0000033!4.97e-16!123;UBERON:0000924!2.19e-15!173;UBERON:0006601!2.19e-15!173;UBERON:0002020!2.96e-13!34;UBERON:0003528!2.96e-13!34;UBERON:0001893!3.42e-13!34;UBERON:0001869!9.61e-13!32;UBERON:0002791!3.70e-12!33;UBERON:0001894!2.44e-11!7;UBERON:0006222!2.44e-11!7;UBERON:0002619!2.95e-09!22;UBERON:0003076!6.52e-09!15;UBERON:0003057!6.52e-09!15;UBERON:0000475!2.24e-08!365;UBERON:0000956!8.44e-08!25;UBERON:0000203!8.44e-08!25;UBERON:0002308!1.07e-07!9;UBERON:0000125!1.07e-07!9;UBERON:0003296!2.22e-07!4;UBERON:0010133!2.22e-07!4;UBERON:0001950!3.47e-07!20;UBERON:0000200!8.90e-07!6;UBERON:0000483!9.24e-07!309 | ||
|ontology_enrichment_uberon_v019=UBERON:0002784;1.02e-14;4!UBERON:0001894;2.66e-14;7!UBERON:0001905;8.05e-14;2!UBERON:0002757;8.05e-14;2!UBERON:0010134;8.05e-14;2!UBERON:0005408;8.05e-14;2!UBERON:0001899;8.05e-14;2!UBERON:0001723;3.18e-09;3!UBERON:0001033;3.18e-09;3!UBERON:0001043;4.14e-09;3!UBERON:0005795;9.70e-08;1!UBERON:0007029;1.03e-07;1!UBERON:0002372;1.89e-07;1!UBERON:0001961;1.89e-07;1!UBERON:0001744;1.89e-07;1!UBERON:0001042;1.89e-07;1!UBERON:0001735;1.89e-07;1!UBERON:0003296;2.50e-07;4!UBERON:0010133;2.50e-07;4!UBERON:0001041;2.89e-07;14 | |ontology_enrichment_uberon_v019=UBERON:0002784;1.02e-14;4!UBERON:0001894;2.66e-14;7!UBERON:0001905;8.05e-14;2!UBERON:0002757;8.05e-14;2!UBERON:0010134;8.05e-14;2!UBERON:0005408;8.05e-14;2!UBERON:0001899;8.05e-14;2!UBERON:0001723;3.18e-09;3!UBERON:0001033;3.18e-09;3!UBERON:0001043;4.14e-09;3!UBERON:0005795;9.70e-08;1!UBERON:0007029;1.03e-07;1!UBERON:0002372;1.89e-07;1!UBERON:0001961;1.89e-07;1!UBERON:0001744;1.89e-07;1!UBERON:0001042;1.89e-07;1!UBERON:0001735;1.89e-07;1!UBERON:0003296;2.50e-07;4!UBERON:0010133;2.50e-07;4!UBERON:0001041;2.89e-07;14 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002784,9.99e-15,4;UBERON:0001894,2.20e-14,7;UBERON:0006222,2.20e-14,7;UBERON:0001905,8.06e-14,2;UBERON:0002757,8.06e-14,2;UBERON:0010134,8.06e-14,2;UBERON:0005408,8.06e-14,2;UBERON:0001899,8.06e-14,2;UBERON:0007023,2.16e-10,114;UBERON:0001723,2.99e-09,3;UBERON:0001033,2.99e-09,3;UBERON:0010056,2.99e-09,3;UBERON:0001043,4.68e-09,3;UBERON:0009143,4.68e-09,3;UBERON:0007029,1.03e-07,1;UBERON:0004121,1.35e-07,171;UBERON:0000924,1.35e-07,171;UBERON:0006601,1.35e-07,171;UBERON:0002372,1.83e-07,1;UBERON:0001961,1.83e-07,1;UBERON:0001744,1.83e-07,1;UBERON:0001735,1.83e-07,1;UBERON:0003296,2.50e-07,4;UBERON:0010133,2.50e-07,4;UBERON:0010371,3.20e-07,104 | |||
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| ||
|short_description=p1@RDH12 | |short_description=p1@RDH12 | ||
}} | }} |
Latest revision as of 05:23, 25 September 2015
Short description: | p1@RDH12 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RDH12_5end |
Coexpression cluster: | C40_eye_retina_Lens_pineal_tongue_retinoblastoma_small |
Association with transcript: | 13bp_to_ENST00000539142_5end |
EntrezGene: | RDH12 |
HGNC: | 19977 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD1a-positive Langerhans cell | 2.34e-13 | 2 |
immature CD1a-positive Langerhans cell | 2.34e-13 | 2 |
epithelial cell of esophagus | 2.21e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
regional part of diencephalon | 9.99e-15 | 4 |
diencephalon | 2.20e-14 | 7 |
future diencephalon | 2.20e-14 | 7 |
pineal body | 8.06e-14 | 2 |
regional part of epithalamus | 8.06e-14 | 2 |
secretory circumventricular organ | 8.06e-14 | 2 |
circumventricular organ | 8.06e-14 | 2 |
epithalamus | 8.06e-14 | 2 |
adult organism | 2.16e-10 | 114 |
tongue | 2.99e-09 | 3 |
gustatory system | 2.99e-09 | 3 |
future tongue | 2.99e-09 | 3 |
esophagus | 4.68e-09 | 3 |
esophageal region | 4.68e-09 | 3 |
surface | 1.03e-07 | 1 |
ectoderm-derived structure | 1.35e-07 | 171 |
ectoderm | 1.35e-07 | 171 |
presumptive ectoderm | 1.35e-07 | 171 |
tonsil | 1.83e-07 | 1 |
mucosa-associated lymphoid tissue | 1.83e-07 | 1 |
lymphoid tissue | 1.83e-07 | 1 |
tonsillar ring | 1.83e-07 | 1 |
gland of diencephalon | 2.50e-07 | 4 |
neuroendocrine gland | 2.50e-07 | 4 |
ecto-epithelium | 3.20e-07 | 104 |