FFCP PHASE1:Mm9::chr5:65001930..65001948,-: Difference between revisions
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{{FFCP|EntrezGene=100042198|HGNC=|MCL_coexpression_id=390|UniProt=|association_with_transcript=0bp_to_NR_045078_5end|description=CAGE_peak_1_at_Gm3716_5end|id=chr5:65001930..65001948,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000680,2.70e-17,6;CL:0000187,2.70e-17,6;CL:0000056,2.70e-17,6;CL:0000222,8.40e-15,7;CL:0000192,1.99e-13,3;CL:0000359,1.99e-13,3;CL:0002539,1.99e-13,3;CL:0000514,1.99e-13,3;CL:0000355,1.80e-11,9;CL:0002293,6.65e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0001135,1.99e-13,3;UBERON:0004237,1.99e-13,3;UBERON:0004695,1.99e-13,3;UBERON:0002111,1.99e-13,3;UBERON:0004178,1.99e-13,3;UBERON:0001134,1.80e-11,9;UBERON:0002036,1.80e-11,9;UBERON:0002385,1.80e-11,9;UBERON:0000486,1.80e-11,9;UBERON:0007503,1.80e-11,9;UBERON:0001015,1.80e-11,9;UBERON:0002329,1.80e-11,9;UBERON:0003082,1.80e-11,9;UBERON:0003059,1.80e-11,9;UBERON:0007282,1.80e-11,9;UBERON:0004290,1.80e-11,9;UBERON:0009618,1.80e-11,9;UBERON:0000383,2.65e-10,10;UBERON:0000947,3.43e-10,4;UBERON:0001637,3.43e-10,4;UBERON:0004573,3.43e-10,4;UBERON:0003509,3.43e-10,4;UBERON:0004571,3.43e-10,4;UBERON:0010191,3.43e-10,4;UBERON:0004572,3.43e-10,4;UBERON:0007524,2.40e-09,11;UBERON:0003077,2.40e-09,11;UBERON:0007285,2.40e-09,11;UBERON:0000055,3.06e-08,5;UBERON:0007500,3.06e-08,5;UBERON:0001981,3.06e-08,5;UBERON:0002049,3.06e-08,5;UBERON:0007798,3.06e-08,5;UBERON:0004537,3.06e-08,5;UBERON:0006965,3.06e-08,5|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0.671517087647559,0.467225281191051,0.258246646883153,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.340173160604279,0,0.261199789138935,0.639969691173627,0.22940928106717,0,0.430761996159075,0,0.190023419456374,0.504060259519861,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,8.05739635043695,5.37297735463427,1.65192076945513,0,3.05235218932625,0.878744730937887,1.1665793944457,1.39986421625363,0,0,0,0,1.80081605225163,1.14613375975503,0.515672092277442,0.404632921719196,0.528990979272033,0,0,0,0,0,0.7104801149461,0.299600110518405,0,0.207379224616955,0,0.210324961351382,0,0.220868540951614,0.244981598429908,0,0,0,0.383062014255563,0.768032666281217,0.131886287730194,0.365950574409639,0,1.11673199600552,0.56276261003168,0.15279824777681,0.589257170947335,0.284743361598206,0,0,0.302286240427142,0,0,0,0,0,0,1.12355536105401,9.88495870952735,8.05336614268893,6.71345191569646,0.14084341977668,12.8326477414318,15.2883143823987,0,0,0,0,0.45673551887624,0,0,0,0.304465478312141,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255715457330331,0,0,0.101839363850316,0,0.252722758433675,0.210441855886474,0.910843100738926,0.459804208866946,0.720248519221397,0.90422890701429,0.816437989815934,0.2562274405697,0.843315521037559,1.03481348295606,1.5089759505299,0.378212160335639,0,0,0,0.348252166522167,0,0.199034266818493,0,0,0,0.621377317606506,0.469052119962192,0,0.23674473558521,0.196764231747404,0.925602677324269,0.232533944750408,0.536546802799238,0.233530684734339,0,0,0,0.146199987425332,0,0.134206418760372,0,0.102904612379284,0,1.58670339998127,0.853153002140936,0.232236671860439,0,0,0,0,0,0.329397909448022,0,0.198956472041151,0,0,0.216138049874694,0,0.758671603812327,0.456994050438915,1.1270773567308,0.203651327845314,0.387904974335251,0.140271639780637,0.0632365371242573,0,0,0.123397163921801,0,0,0.196558995113203,0.224862112384854,0,0.241177159752417,0.25462585178142,0,0.162135226775035,0,1.43768206527355,0,0.624075346229121,0,0,0,0,0.189491411770485,0.488894929326078,0.169745085775188,0.234690248288502,0.670025029767263,0.238043640886014,0,0,0,0.159454768657487,0.163863314715738,0,0.144649058581512,0,0,0,0,0,0,1.47541450839008,0,0,0,0.430846795465598,0,0.222798674082394,0.283076530788832,0.404810701674894,0,0.790575555893047,0,0.141940085208269,0,0,0.494910368917606,0,0,0,0.188605079755898,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0.340439605753788,0.36012218806262,0.517434735131018,0,0.532020700926821,0,0.164549020602121,0,0.23467170806371,0,0,0,0,0,0,0,0,0.18542530201051,0,0.412773735926445,0,0,0,0,0.169978429993855,0,0,0,0.474503990371703,0,0.216010681643603,0.627264888043406,0,0.134864346384821,0,0,0,0,0,0,0.165458490457098,0.388902376688095,0.129159823477731,0.168956125490778,0.352071715937262,0,0,0,0,0,0.810900861160657,0.205421914329655,0.909445760844565,0.716106782669926,0.993406773906324,0.480781798079875,0.295379054349154,1.00966449948148,0.457240839929999,0.302478555410522,0.292373642219257,0.673482891482306,0.350630706544707,0,0,0,0.167884616364078,0.19318959403219,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93408612825759,0.399024873401031,0.170733605754134,0,0.209613162627982,0,0,0.206035057238894,0.320919209591815,0,0,0,0,0.128050304809739,0,0,0.115884325944855,0,0.412085900803307,0,0,0.177475806159338,0,0.436039249896986,0.0941093804153306,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p1@Gm3716}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100042198 | |||
|HGNC= | |||
|MCL_coexpression_id=390 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_NR_045078_5end | |||
|cluster_id=chr5:65001930..65001948,- | |||
|description=CAGE_peak_1_at_Gm3716_5end | |||
|id=chr5:65001930..65001948,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,2.70e-17,6;CL:0000187,2.70e-17,6;CL:0000056,2.70e-17,6;CL:0000222,8.40e-15,7;CL:0000192,1.99e-13,3;CL:0000359,1.99e-13,3;CL:0002539,1.99e-13,3;CL:0000514,1.99e-13,3;CL:0000355,1.80e-11,9;CL:0002293,6.65e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001135,1.99e-13,3;UBERON:0004237,1.99e-13,3;UBERON:0004695,1.99e-13,3;UBERON:0002111,1.99e-13,3;UBERON:0004178,1.99e-13,3;UBERON:0001134,1.80e-11,9;UBERON:0002036,1.80e-11,9;UBERON:0002385,1.80e-11,9;UBERON:0000486,1.80e-11,9;UBERON:0007503,1.80e-11,9;UBERON:0001015,1.80e-11,9;UBERON:0002329,1.80e-11,9;UBERON:0003082,1.80e-11,9;UBERON:0003059,1.80e-11,9;UBERON:0007282,1.80e-11,9;UBERON:0004290,1.80e-11,9;UBERON:0009618,1.80e-11,9;UBERON:0000383,2.65e-10,10;UBERON:0000947,3.43e-10,4;UBERON:0001637,3.43e-10,4;UBERON:0004573,3.43e-10,4;UBERON:0003509,3.43e-10,4;UBERON:0004571,3.43e-10,4;UBERON:0010191,3.43e-10,4;UBERON:0004572,3.43e-10,4;UBERON:0007524,2.40e-09,11;UBERON:0003077,2.40e-09,11;UBERON:0007285,2.40e-09,11;UBERON:0000055,3.06e-08,5;UBERON:0007500,3.06e-08,5;UBERON:0001981,3.06e-08,5;UBERON:0002049,3.06e-08,5;UBERON:0007798,3.06e-08,5;UBERON:0004537,3.06e-08,5;UBERON:0006965,3.06e-08,5 | |||
|phase1_expression=0.320297694209588,0,0,0.30246421130683,0,0.671517087647559,0.467225281191051,0.258246646883153,0,0,0,0,0,0.0874204024189974,0,0,0,0,0,0,0.340173160604279,0,0.261199789138935,0.639969691173627,0.22940928106717,0,0.430761996159075,0,0.190023419456374,0.504060259519861,0.221730510655305,0,0,0,0,0,0,0,0,0,0,0,0,8.05739635043695,5.37297735463427,1.65192076945513,0,3.05235218932625,0.878744730937887,1.1665793944457,1.39986421625363,0,0,0,0,1.80081605225163,1.14613375975503,0.515672092277442,0.404632921719196,0.528990979272033,0,0,0,0,0,0.7104801149461,0.299600110518405,0,0.207379224616955,0,0.210324961351382,0,0.220868540951614,0.244981598429908,0,0,0,0.383062014255563,0.768032666281217,0.131886287730194,0.365950574409639,0,1.11673199600552,0.56276261003168,0.15279824777681,0.589257170947335,0.284743361598206,0,0,0.302286240427142,0,0,0,0,0,0,1.12355536105401,9.88495870952735,8.05336614268893,6.71345191569646,0.14084341977668,12.8326477414318,15.2883143823987,0,0,0,0,0.45673551887624,0,0,0,0.304465478312141,0,0,0.117588707135705,0,0,0,0,0.161766849947409,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255715457330331,0,0,0.101839363850316,0,0.252722758433675,0.210441855886474,0.910843100738926,0.459804208866946,0.720248519221397,0.90422890701429,0.816437989815934,0.2562274405697,0.843315521037559,1.03481348295606,1.5089759505299,0.378212160335639,0,0,0,0.348252166522167,0,0.199034266818493,0,0,0,0.621377317606506,0.469052119962192,0,0.23674473558521,0.196764231747404,0.925602677324269,0.232533944750408,0.536546802799238,0.233530684734339,0,0,0,0.146199987425332,0,0.134206418760372,0,0.102904612379284,0,1.58670339998127,0.853153002140936,0.232236671860439,0,0,0,0,0,0.329397909448022,0,0.198956472041151,0,0,0.216138049874694,0,0.758671603812327,0.456994050438915,1.1270773567308,0.203651327845314,0.387904974335251,0.140271639780637,0.0632365371242573,0,0,0.123397163921801,0,0,0.196558995113203,0.224862112384854,0,0.241177159752417,0.25462585178142,0,0.162135226775035,0,1.43768206527355,0,0.624075346229121,0,0,0,0,0.189491411770485,0.488894929326078,0.169745085775188,0.234690248288502,0.670025029767263,0.238043640886014,0,0,0,0.159454768657487,0.163863314715738,0,0.144649058581512,0,0,0,0,0,0,1.47541450839008,0,0,0,0.430846795465598,0,0.222798674082394,0.283076530788832,0.404810701674894,0,0.790575555893047,0,0.141940085208269,0,0,0.494910368917606,0,0,0,0.188605079755898,0,0.307435147943927,0.258428293168221,0,0,0,0,0,0.340439605753788,0.36012218806262,0.517434735131018,0,0.532020700926821,0,0.164549020602121,0,0.23467170806371,0,0,0,0,0,0,0,0,0.18542530201051,0,0.412773735926445,0,0,0,0,0.169978429993855,0,0,0,0.474503990371703,0,0.216010681643603,0.627264888043406,0,0.134864346384821,0,0,0,0,0,0,0.165458490457098,0.388902376688095,0.129159823477731,0.168956125490778,0.352071715937262,0,0,0,0,0,0.810900861160657,0.205421914329655,0.909445760844565,0.716106782669926,0.993406773906324,0.480781798079875,0.295379054349154,1.00966449948148,0.457240839929999,0.302478555410522,0.292373642219257,0.673482891482306,0.350630706544707,0,0,0,0.167884616364078,0.19318959403219,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93408612825759,0.399024873401031,0.170733605754134,0,0.209613162627982,0,0,0.206035057238894,0.320919209591815,0,0,0,0,0.128050304809739,0,0,0.115884325944855,0,0.412085900803307,0,0,0.177475806159338,0,0.436039249896986,0.0941093804153306,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p1@Gm3716 | |||
}} |
Latest revision as of 03:05, 26 September 2015
Short description: | p1@Gm3716 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Gm3716_5end |
Coexpression cluster: | MCL_coexpression_mm9:390 |
Association with transcript: | 0bp_to_NR_045078_5end |
EntrezGene: | Gm3716 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 2.70e-17 | 6 |
muscle cell | 2.70e-17 | 6 |
myoblast | 2.70e-17 | 6 |
mesodermal cell | 8.40e-15 | 7 |
smooth muscle cell | 1.99e-13 | 3 |
vascular associated smooth muscle cell | 1.99e-13 | 3 |
aortic smooth muscle cell | 1.99e-13 | 3 |
smooth muscle myoblast | 1.99e-13 | 3 |
multi-potent skeletal muscle stem cell | 1.80e-11 | 9 |
epithelial cell of thymus | 6.65e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
smooth muscle tissue | 1.99e-13 | 3 |
blood vessel smooth muscle | 1.99e-13 | 3 |
arterial system smooth muscle | 1.99e-13 | 3 |
artery smooth muscle tissue | 1.99e-13 | 3 |
aorta smooth muscle tissue | 1.99e-13 | 3 |
skeletal muscle tissue | 1.80e-11 | 9 |
striated muscle tissue | 1.80e-11 | 9 |
muscle tissue | 1.80e-11 | 9 |
multilaminar epithelium | 1.80e-11 | 9 |
epithelial vesicle | 1.80e-11 | 9 |
musculature | 1.80e-11 | 9 |
somite | 1.80e-11 | 9 |
myotome | 1.80e-11 | 9 |
presomitic mesoderm | 1.80e-11 | 9 |
presumptive segmental plate | 1.80e-11 | 9 |
dermomyotome | 1.80e-11 | 9 |
trunk paraxial mesoderm | 1.80e-11 | 9 |
musculature of body | 2.65e-10 | 10 |
aorta | 3.43e-10 | 4 |
artery | 3.43e-10 | 4 |
systemic artery | 3.43e-10 | 4 |
arterial blood vessel | 3.43e-10 | 4 |
systemic arterial system | 3.43e-10 | 4 |
aortic system | 3.43e-10 | 4 |
arterial system | 3.43e-10 | 4 |
dense mesenchyme tissue | 2.40e-09 | 11 |
paraxial mesoderm | 2.40e-09 | 11 |
presumptive paraxial mesoderm | 2.40e-09 | 11 |
vessel | 3.06e-08 | 5 |
epithelial tube open at both ends | 3.06e-08 | 5 |
blood vessel | 3.06e-08 | 5 |
vasculature | 3.06e-08 | 5 |
vascular system | 3.06e-08 | 5 |
blood vasculature | 3.06e-08 | 5 |
vascular cord | 3.06e-08 | 5 |