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(Created page with "{{f5samples |id=FF:11322-117D8 |name=Myoblast, donor2 |sample_id=11322 |rna_tube_id=117D8 |rna_box=117 |rna_position=D8 |sample_cell_lot=N/A |sample_cell_catalog=N/A ...")
 
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{{f5samples
{{f5samples
|id=FF:11322-117D8
|DRA_sample_Accession=CAGE@SAMD00005337
|name=Myoblast, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005337
|sample_id=11322
|accession_numbers=CAGE;DRX008368;DRR009240;DRZ000665;DRZ002050;DRZ012015;DRZ013400
|rna_tube_id=117D8
|accession_numbers_RNASeq=sRNA-Seq;DRX037199;DRR041565;DRZ007207
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383
|rna_position=D8
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0000680,CL:0002321,CL:0002371,CL:0000056,CL:0000255,CL:0000515
|sample_cell_lot=N/A
|sample_cell_catalog=N/A
|sample_company=Sciencell/3H
|rna_lot_number=SKM2
|rna_catalog_number=SC3525
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=21 years old adult
|sample_tissue=skeletal muscle
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=21
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=skeletal muscle myoblast
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=10.00000
|rna_concentration=0.95400
|sample_note=
|profile_hcage=CNhs11965,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10012,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000515,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000119,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001015,UBERON:0001062,UBERON:0001134,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002385,UBERON:0002532,UBERON:0003059,UBERON:0003077,UBERON:0003082,UBERON:0003104,UBERON:0004120,UBERON:0004290,UBERON:0005291,UBERON:0005423,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000164
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!1.98!94.11!MYF5;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.60!38.63!HOXC5;;chr7:19157248..19157268,-!p1@TWIST1!1.51!84.86!TWIST1;;chr14:61116183..61116208,-!p1@SIX1!1.48!107.26!SIX1;;chr12:66218255..66218304,+!p3@HMGA2!1.46!73.36!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.40!26.92!PRRX1;;chr12:54379029..54379057,+!p2@HOXC10!1.38!23.22!HOXC10;;chr12:66218836..66218888,+!p1@HMGA2!1.32!181.85!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!1.31!47.26!FOXC2;;chr7:27224842..27224872,-!p1@HOXA11!1.27!17.67!HOXA11;;chr12:54378923..54378966,+!p1@HOXC10!1.25!16.64!HOXC10;;chr12:66218598..66218645,+!p2@HMGA2!1.23!72.53!HMGA2;;chr1:40105299..40105326,-!p1@HEYL!1.23!15.82!HEYL;;chr22:19748231..19748317,+!p1@TBX1!1.20!14.79!TBX1;;chr12:66218904..66218913,+!p11@HMGA2!1.18!14.18!HMGA2;;chr7:27192185..27192209,-!p1@HOXA3!1.18!13.97!HOXA3;;chr11:17741111..17741124,+!p1@MYOD1!1.14!12.74!MYOD1;;chr12:66218923..66218934,+!p14@HMGA2!1.13!12.53!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.12!17.67!HMGA2;;chr17:48072574..48072597,-!p1@DLX3!1.12!12.12!DLX3;;chr7:27224795..27224840,-!p2@HOXA11!1.08!11.10!HOXA11;;chr6:34204921..34204939,+!p3@HMGA1!1.06!319.93!HMGA1;;chr19:13134772..13134822,+!p2@NFIX!1.05!15.21!NFIX;;chr12:54332608..54332636,+!p1@HOXC13!1.04!10.07!HOXC13;;chr12:54366975..54367001,+!p1@HOXC11!1.04!9.86!HOXC11;;chr1:170633348..170633399,+!p2@PRRX1!1.03!13.36!PRRX1;;chr5:92918919..92918942,+!p1@NR2F1!1.01!42.53!NR2F1;;chr12:66218183..66218209,+!p4@HMGA2!1.00!17.67!HMGA2;;chr9:77112244..77112262,+!p1@RORB!0.98!9.66!RORB;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.97!8.84!GLIS1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.97!8.42!HOXC5;;chr12:53614115..53614154,-!p1@RARG!0.95!43.36!RARG;;chr11:113930425..113930471,+!p1@ZBTB16!0.95!11.71!ZBTB16;;chr1:170633262..170633285,+!p3@PRRX1!0.95!9.04!PRRX1;;chr6:100912785..100912822,-!p1@SIM1!0.95!8.01!SIM1;;chr2:19558373..19558392,-!p1@OSR1!0.94!21.58!OSR1;;chr11:65686802..65686818,+!p6@DRAP1!0.94!13.56!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!0.94!8.42!PRRX1;;chr14:37131058..37131139,+!p1@PAX9!0.93!7.60!PAX9;;chr2:223163706..223163730,-!p1@PAX3!0.92!7.40!PAX3;;chr2:85981107..85981120,+!p3@ATOH8!0.91!7.19!ATOH8;;chr14:61116168..61116180,-!p2@SIX1!0.90!8.01!SIX1;;chr2:45236540..45236577,-!p1@SIX2!0.90!6.99!SIX2;;chr12:54393880..54393962,+!p1@HOXC9!0.88!6.58!HOXC9;;chr6:1312325..1312340,+!p1@FOXQ1!0.87!10.68!FOXQ1;;chr12:115122318..115122331,-!p2@TBX3!0.87!6.37!TBX3;;chr11:65686732..65686756,+!p2@DRAP1!0.86!27.74!DRAP1;;chr11:65667884..65667895,-!p2@FOSL1!0.86!25.68!FOSL1;;chr12:54366949..54366973,+!p3@HOXC11!0.86!6.16!HOXC11;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.16!PRRX1;;chr10:131762504..131762555,-!p1@EBF3!0.84!5.96!EBF3;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.96!KDM5D;;chr6:100912752..100912778,-!p2@SIM1!0.84!5.96!SIM1;;chr11:65687362..65687436,+!p3@DRAP1!0.83!28.15!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.83!19.31!AHRR;;chr12:66357214..66357233,+!p13@HMGA2!0.83!5.75!HMGA2;;chr8:77593474..77593612,+!p1@ZFHX4!0.82!25.27!ZFHX4;;chr7:27205106..27205134,-!p2@HOXA9!0.82!5.55!HOXA9;;chr8:49833948..49833973,-!p2@SNAI2!0.81!37.60!SNAI2;;chr11:46299199..46299233,+!p1@CREB3L1!0.81!30.00!CREB3L1;;chr3:21792585..21792625,-!p2@ZNF385D!0.81!6.16!ZNF385D;;chr12:115121962..115121987,-!p1@TBX3!0.80!48.49!TBX3;;chr21:36421535..36421610,-!p2@RUNX1!0.80!20.34!RUNX1;;chr16:86600870..86600921,+!p2@FOXC2!0.80!5.34!FOXC2;;chr2:172967242..172967265,-!p2@DLX2!0.80!5.34!DLX2;;chr14:62162258..62162269,+!p2@HIF1A!0.79!54.66!HIF1A;;chr14:62162285..62162296,+!p3@HIF1A!0.78!28.56!HIF1A;;chr11:113930291..113930339,+!p2@ZBTB16!0.78!8.63!ZBTB16;;chr12:66218378..66218401,+!p6@HMGA2!0.78!8.01!HMGA2;;chr5:158526917..158526932,-!p1@EBF1!0.77!13.15!EBF1;;chr12:66218443..66218461,+!p8@HMGA2!0.77!6.37!HMGA2;;chr2:119605214..119605230,-!p1@EN1!0.77!4.93!EN1;;chr4:111544219..111544240,-!p1@PITX2!0.77!4.93!PITX2;;chr7:19157043..19157088,-!p2@TWIST1!0.76!12.95!TWIST1;;chr4:111558135..111558198,-!p2@PITX2!0.76!4.73!PITX2;;chr20:39946361..39946379,-!p2@ZHX3!0.75!14.79!ZHX3;;chr2:239756671..239756732,+!p1@TWIST2!0.74!15.82!TWIST2;;chr2:85980951..85981004,+!p1@ATOH8!0.74!7.81!ATOH8;;chr2:85981073..85981091,+!p5@ATOH8!0.74!4.52!ATOH8;;chr12:66218420..66218439,+!p12@HMGA2!0.74!4.52!HMGA2;;chr16:86601052..86601066,+!p4@FOXC2!0.74!4.52!FOXC2;;chr11:17741254..17741282,+!p2@MYOD1!0.73!4.32!MYOD1;;chr12:54380036..54380091,+!p4@HOXC10!0.73!4.32!HOXC10;;chr1:8934931..8934947,-!p4@ENO1!0.72!15.41!ENO1;;chr15:57511609..57511651,+!p2@TCF12!0.72!7.60!TCF12;;chr12:115122005..115122016,-!p3@TBX3!0.72!5.14!TBX3;;chr16:86600458..86600461,+!p3@FOXC2!0.71!4.11!FOXC2;;chr1:8926441..8926473,-!p10@ENO1!0.70!6.37!ENO1;;chr5:92918860..92918871,+!p10@NR2F1!0.70!4.52!NR2F1;;chr8:49833978..49833996,-!p1@SNAI2!0.69!92.88!SNAI2;;chr5:92918768..92918783,+!p8@NR2F1!0.69!3.90!NR2F1;;chr1:170633058..170633084,+!p5@PRRX1!0.69!3.90!PRRX1;;chr12:543326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IS3;;chr9:35732647..35732678,+!p2@CREB3!0.28!8.84!CREB3;;chr2:28616358..28616380,+!p3@FOSL2!0.28!8.22!FOSL2;;chr3:187463179..187463201,-!p2@BCL6!0.28!6.37!BCL6;;chr19:58220517..58220583,-!p1@ZNF154!0.28!4.73!ZNF154;;chr8:116681221..116681236,-!p3@TRPS1!0.28!4.32!TRPS1;;chr20:3388579..3388619,-!p3@C20orf194!0.28!3.29!C20orf194;;chr19:37407172..37407217,-!p2@ZNF829!0.28!2.26!ZNF829;;chrX:101975619..101975641,+!p2@BHLHB9!0.28!2.26!BHLHB9;;chr12:124457725..124457736,+!p2@ZNF664!0.28!2.26!ZNF664;;chr9:94186085..94186096,-!p3@NFIL3!0.28!2.05!NFIL3;;chr15:96874216..96874236,+!p13@NR2F2!0.28!1.85!NR2F2;;chr7:104752306..104752335,+!p4@MLL5!0.28!1.64!MLL5;;chr8:57123873..57123894,-!p2@PLAG1!0.28!1.64!PLAG1;;chr19:45260775..45260838,+!p5@BCL3!0.28!1.44!BCL3;;chr19:13106383..13106423,+!p8@NFIX!0.28!1.44!NFIX;;chr11:6947720..6947812,+!p1@ZNF215!0.28!1.44!ZNF215;;chr10:8096772..8096787,+!p2@GATA3!0.28!1.23!GATA3;;chr17:46622229..46622257,-!p6@HOXB2!0.28!1.23!HOXB2;;chr17:38474489..38474548,+!p1@RARA!0.27!52.81!RARA;;chr9:35732592..35732640,+!p1@CREB3!0.27!21.99!CREB3;;chr1:61548225..61548299,+!p1@NFIA!0.27!21.37!NFIA;;chr20:39317868..39317884,-!p1@MAFB!0.27!19.52!MAFB;;chr13:41635512..41635539,-!p2@ELF1!0.27!8.84!ELF1;;chr19:58446721..58446779,-!p1@ZNF418!0.27!3.90!ZNF418;;chr1:33938236..33938267,+!p1@ZSCAN20!0.27!3.49!ZSCAN20;;chr19:37329254..37329295,-!p1@ZNF790!0.27!3.49!ZNF790;;chr1:61547781..61547809,+!p5@NFIA!0.27!2.67!NFIA;;chr1:8939265..8939367,-!p5@ENO1!0.27!2.67!ENO1;;chr8:28243813..28243839,-!p4@ZNF395!0.27!2.26!ZNF395;;chr8:72756667..72756736,-!p2@MSC!0.27!1.85!MSC;;chr5:178322893..178322931,+!p1@ZFP2!0.27!1.64!ZFP2;;chr1:61547811..61547837,+!p7@NFIA!0.27!1.64!NFIA;;chr15:96875041..96875052,+!p17@NR2F2!0.27!1.64!NR2F2;;chr14:24020938..24020988,-!p1@ZFHX2!0.27!1.64!ZFHX2;;chr13:46549688..46549712,-!p5@ZC3H13!0.27!1.44!ZC3H13;;chr19:7584815..7584829,+!p2@ZNF358!0.27!1.44!ZNF358;;chr2:28616337..28616355,+!p2@FOSL2!0.26!28.97!FOSL2;;chr9:73028332..73028385,-!p3@KLF9!0.26!4.93!KLF9;;chr4:47916613..47916640,-!p3@NFXL1!0.26!4.11!NFXL1;;chr21:36259445..36259519,-!p4@RUNX1!0.26!3.90!RUNX1;;chr3:48282536..48282586,+!p2@ZNF589!0.26!3.70!ZNF589;;chr1:211433151..211433191,+!p5@RCOR3!0.26!2.67!RCOR3;;chr22:46546494..46546525,+!p2@PPARA!0.26!2.47!PPARA;;chr1:235383681..235383700,-!p2@ARID4B!0.26!2.05!ARID4B;;chr1:35656352..35656383,-!p7@SFPQ!0.26!2.05!SFPQ;;chr6:45390002..45390023,+!p6@RUNX2!0.26!2.05!RUNX2;;chr16:73082004..73082033,-!p5@ZFHX3!0.26!1.85!ZFHX3;;chr17:46655704..46655718,-!p2@HOXB4!0.26!1.64!HOXB4;;chr22:42269885..42269899,+!p4@SREBF2!0.26!1.64!SREBF2;;chr4:87967906..87967931,+!p15@AFF1!0.26!1.44!AFF1;;chr11:6947647..6947698,+!p2@ZNF215!0.26!1.44!ZNF215;;chr19:49864746..49864780,-!p2@TEAD2!0.26!1.44!TEAD2;;chr1:8926369..8926385,-!p12@ENO1!0.26!1.44!ENO1;;chr8:128747661..128747703,+!p6@MYC!0.26!1.44!MYC;;chrX:107018969..107019024,-!p6@TSC22D3!0.26!1.44!TSC22D3;;chr12:80083544..80083558,-!p13@PAWR!0.26!1.23!PAWR;;chr11:46299186..46299195,+!p3@CREB3L1!0.26!1.03!CREB3L1;;chr13:74707894..74707947,-!p6@KLF12!0.26!1.03!KLF12;;chr16:31454084..31454115,-!p1@ZNF843!0.26!1.03!ZNF843;;chr18:53068911..53068935,-!p4@TCF4!0.26!1.03!TCF4;;chr3:170076223..170076242,+!p6@SKIL!0.26!1.03!SKIL;;chr2:19558327..19558334,-!p2@OSR1!0.26!0.82!OSR1;;chr2:96012298..96012317,+!p6@KCNIP3!0.26!0.82!KCNIP3;;chr3:147110055..147110129,-!p1@ZIC4!0.26!0.82!ZIC4;;chr3:169381183..169381205,-!p4@MECOM!0.26!0.82!MECOM;;chr4:57522674..57522699,-!p5@HOPX!0.26!0.82!HOPX;;chr16:86612149..86612161,+!p2@FOXL1!0.26!0.82!FOXL1;;chr17:46621146..46621180,-!p10@HOXB2!0.26!0.82!HOXB2;;chr17:59477403..59477414,+!p4@TBX2!0.26!0.82!TBX2;;chr19:13135914..13135942,+!p19@NFIX!0.26!0.82!NFIX;;chr19:13135989..13136023,+!p18@NFIX!0.26!0.82!NFIX;;chr19:31840699..31840720,-!p7@TSHZ3!0.26!0.82!TSHZ3;;chr9:22447422..22447483,+!p1@DMRTA1!0.26!0.82!DMRTA1;;chrX:30327504..30327509,-!p1@NR0B1!0.26!0.82!NR0B1;;chr9:73029044..73029056,-!p10@KLF9!0.26!0.82!KLF9;;chr10:28034739..28034756,-!p1@MKX!0.26!0.82!MKX;;chr10:31610110..31610159,+!p2@ZEB1!0.26!0.82!ZEB1;;chr10:3824206..3824226,-!p10@KLF6!0.26!0.82!KLF6;;chr11:113930355..113930366,+!p5@ZBTB16!0.26!0.82!ZBTB16;;chr11:128392265..128392267,-!p10@ETS1!0.26!0.82!ETS1;;chr11:65688877..65688891,+!p13@DRAP1!0.26!0.82!DRAP1;;chr12:53625846..53625861,-!p6@RARG!0.26!0.82!RARG;;chr12:54447637..54447659,+!p4@HOXC4!0.26!0.82!HOXC4;;chr12:66218413..66218418,+!p17@HMGA2!0.26!0.82!HMGA2;;chr12:80084120..80084136,-!p15@PAWR!0.26!0.82!PAWR;;chr14:35872542..35872553,-!p10@NFKBIA!0.26!0.82!NFKBIA;;chr14:62214151..62214164,+!p11@HIF1A!0.26!0.82!HIF1A;;chr14:74256787..74256858,-!p6@C14orf43!0.26!0.82!C14orf43;;chr5:133477905..133477956,+!p5@TCF7!0.26!0.82!TCF7;;chr5:92920517..92920532,+!p15@NR2F1!0.26!0.82!NR2F1;;chr6:155635647..155635658,-!p2@TFB1M!0.26!0.82!TFB1M;;chr6:34210478..34210481,+!p8@HMGA1!0.26!0.82!HMGA1;;chr19:38714830..38714845,-!p5@DPF1!0.26!0.82!DPF1;;chr1:119530636..119530653,-!p2@TBX15!0.26!0.82!TBX15;;chr1:170632051..170632081,+!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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000515;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000515
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor2.CNhs11965.11322-117D8.hg38.nobarcode.ctss.bed.gz
|id=FF:11322-117D8
|is_a=EFO:0002091;;FF:0000164
|is_obsolete=
|library_id=CNhs11965
|library_id_phase_based=2:CNhs11965
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11322
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.GTTTCG.11322
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11322
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.GTTTCG.11322
|name=Myoblast, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11965,LSID836,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10012,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=117
|rna_catalog_number=SC3525
|rna_concentration=0.954
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=SKM2
|rna_od260/230=
|rna_od260/280=
|rna_position=D8
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117D8
|rna_weight_ug=10
|rnaseq_library_id=SRhi10012.GTTTCG
|sample_age=21
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=skeletal muscle myoblast
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=21 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.24943900629107e-239!GO:0005737;cytoplasm;1.38135819441211e-195!GO:0043226;organelle;8.33614479858184e-192!GO:0043229;intracellular organelle;1.6047830753755e-191!GO:0043231;intracellular membrane-bound organelle;3.04665348394412e-184!GO:0043227;membrane-bound organelle;6.97861938649821e-184!GO:0044444;cytoplasmic part;2.83667154642642e-145!GO:0044422;organelle part;9.4391427274134e-141!GO:0044446;intracellular organelle part;2.63810108371273e-139!GO:0032991;macromolecular complex;1.25352585604156e-96!GO:0044237;cellular metabolic process;2.85415920559607e-84!GO:0044238;primary metabolic process;1.98320315519107e-83!GO:0030529;ribonucleoprotein complex;2.33215202056575e-83!GO:0005515;protein binding;4.97556258006179e-81!GO:0043170;macromolecule metabolic process;3.92958007554195e-77!GO:0043233;organelle lumen;6.00877292230918e-70!GO:0031974;membrane-enclosed lumen;6.00877292230918e-70!GO:0005634;nucleus;1.56427733526874e-66!GO:0044428;nuclear part;7.558788700061e-66!GO:0003723;RNA binding;4.97398666339077e-65!GO:0005739;mitochondrion;6.41635068786324e-64!GO:0031090;organelle membrane;6.56596884077813e-55!GO:0005840;ribosome;2.507313194806e-51!GO:0019538;protein metabolic process;1.70623162971341e-49!GO:0043234;protein complex;5.6707242182851e-49!GO:0006412;translation;1.17403486204639e-47!GO:0016043;cellular component organization and biogenesis;1.30786361102927e-47!GO:0015031;protein transport;9.08134559388356e-45!GO:0003735;structural constituent of ribosome;9.93518098568872e-45!GO:0033036;macromolecule localization;2.1012523398861e-44!GO:0044429;mitochondrial part;3.16952324878975e-44!GO:0044260;cellular macromolecule metabolic process;3.84273005061971e-44!GO:0006396;RNA processing;4.30266028889418e-44!GO:0044267;cellular protein metabolic process;2.61396231763059e-43!GO:0045184;establishment of protein localization;2.2492471414956e-41!GO:0008104;protein localization;2.39131443518891e-41!GO:0043283;biopolymer metabolic process;2.56682272219189e-41!GO:0031967;organelle envelope;1.28179529955375e-40!GO:0031981;nuclear lumen;2.00967342439329e-40!GO:0031975;envelope;3.24986490460023e-40!GO:0009058;biosynthetic process;4.46291904879087e-40!GO:0005829;cytosol;6.21960185379235e-40!GO:0009059;macromolecule biosynthetic process;3.8457328088023e-39!GO:0010467;gene expression;4.07001191740356e-39!GO:0033279;ribosomal subunit;4.54231813229349e-39!GO:0044249;cellular biosynthetic process;4.14348951056291e-36!GO:0046907;intracellular transport;4.58005964982552e-36!GO:0016071;mRNA metabolic process;6.09505410514619e-36!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.31787622467288e-34!GO:0008380;RNA splicing;9.85546990604592e-33!GO:0043228;non-membrane-bound organelle;2.74485055654186e-32!GO:0043232;intracellular non-membrane-bound organelle;2.74485055654186e-32!GO:0006886;intracellular protein transport;1.25477475329903e-30!GO:0006397;mRNA processing;2.45248671541062e-30!GO:0005740;mitochondrial envelope;1.54624617881639e-29!GO:0065003;macromolecular complex assembly;2.27181789220005e-29!GO:0006996;organelle organization and biogenesis;4.88580752722442e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.9482136253006e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.06080909627451e-28!GO:0031966;mitochondrial membrane;7.01127415708066e-28!GO:0019866;organelle inner membrane;5.94490973520927e-27!GO:0022607;cellular component assembly;1.24651307760615e-26!GO:0005743;mitochondrial inner membrane;4.14792438750493e-25!GO:0005654;nucleoplasm;1.77979465661678e-24!GO:0044445;cytosolic part;4.08348417444419e-23!GO:0006119;oxidative phosphorylation;5.21407334007146e-23!GO:0005681;spliceosome;7.87897625282195e-23!GO:0051641;cellular localization;9.45725868589562e-23!GO:0012505;endomembrane system;9.73006741089176e-23!GO:0051649;establishment of cellular localization;1.06206678566143e-22!GO:0005783;endoplasmic reticulum;2.04819249486941e-21!GO:0006457;protein folding;8.18719826046643e-21!GO:0006259;DNA metabolic process;1.16102052986709e-20!GO:0044455;mitochondrial membrane part;2.03499138530882e-20!GO:0015935;small ribosomal subunit;2.63433311481558e-20!GO:0044451;nucleoplasm part;7.639852788771e-20!GO:0015934;large ribosomal subunit;9.27796959484053e-20!GO:0003676;nucleic acid binding;3.04144881281997e-19!GO:0000166;nucleotide binding;7.89310171313245e-19!GO:0048770;pigment granule;1.23152793793883e-18!GO:0042470;melanosome;1.23152793793883e-18!GO:0005794;Golgi apparatus;1.61651072630664e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.69366031646869e-18!GO:0016462;pyrophosphatase activity;1.81090995340863e-18!GO:0031980;mitochondrial lumen;2.08517361114136e-18!GO:0005759;mitochondrial matrix;2.08517361114136e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.51696017184675e-18!GO:0017111;nucleoside-triphosphatase activity;4.61723327558816e-18!GO:0044432;endoplasmic reticulum part;1.12411104394877e-17!GO:0005746;mitochondrial respiratory chain;1.24649196804309e-17!GO:0022618;protein-RNA complex assembly;3.05799402517541e-17!GO:0044265;cellular macromolecule catabolic process;9.96614435847228e-17!GO:0005730;nucleolus;1.11669328059637e-16!GO:0008134;transcription factor binding;1.25280104474755e-16!GO:0016070;RNA metabolic process;2.38540128358601e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.70725182476954e-16!GO:0006512;ubiquitin cycle;4.20848165930773e-16!GO:0051186;cofactor metabolic process;4.26401624863314e-16!GO:0043285;biopolymer catabolic process;5.56050625919537e-16!GO:0007049;cell cycle;9.25916024928059e-16!GO:0016874;ligase activity;1.06038962544982e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.31196410934603e-15!GO:0003954;NADH dehydrogenase activity;1.31196410934603e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.31196410934603e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;1.44347514670295e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.47583777753024e-15!GO:0019941;modification-dependent protein catabolic process;2.88762830803154e-15!GO:0043632;modification-dependent macromolecule catabolic process;2.88762830803154e-15!GO:0006511;ubiquitin-dependent protein catabolic process;3.14294882437515e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.26931448224164e-15!GO:0006605;protein targeting;3.69937849812561e-15!GO:0044257;cellular protein catabolic process;3.9953754611088e-15!GO:0008135;translation factor activity, nucleic acid binding;5.23316566937029e-15!GO:0009057;macromolecule catabolic process;5.62705892463608e-15!GO:0044248;cellular catabolic process;8.22904432784644e-15!GO:0048193;Golgi vesicle transport;2.27908149026107e-14!GO:0005761;mitochondrial ribosome;2.88886913527295e-14!GO:0000313;organellar ribosome;2.88886913527295e-14!GO:0030964;NADH dehydrogenase complex (quinone);7.14325512242532e-14!GO:0045271;respiratory chain complex I;7.14325512242532e-14!GO:0005747;mitochondrial respiratory chain complex I;7.14325512242532e-14!GO:0042775;organelle ATP synthesis coupled electron transport;7.17007275643529e-14!GO:0042773;ATP synthesis coupled electron transport;7.17007275643529e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.48332167087405e-14!GO:0051082;unfolded protein binding;1.13918607181627e-13!GO:0030163;protein catabolic process;1.86044139631553e-13!GO:0016192;vesicle-mediated transport;1.87017804676407e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.28946578043445e-13!GO:0043412;biopolymer modification;3.86567844862073e-13!GO:0017076;purine nucleotide binding;4.6504559690252e-13!GO:0032553;ribonucleotide binding;5.39845020786392e-13!GO:0032555;purine ribonucleotide binding;5.39845020786392e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.94250135450359e-13!GO:0005793;ER-Golgi intermediate compartment;1.29900148485618e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.08935162772706e-12!GO:0006732;coenzyme metabolic process;2.14690104129086e-12!GO:0042254;ribosome biogenesis and assembly;2.14690104129086e-12!GO:0003743;translation initiation factor activity;3.37207579734534e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;4.50384003268728e-12!GO:0000375;RNA splicing, via transesterification reactions;4.50384003268728e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.50384003268728e-12!GO:0005635;nuclear envelope;4.92502638333213e-12!GO:0005789;endoplasmic reticulum membrane;6.51234124281122e-12!GO:0022402;cell cycle process;7.32573843939177e-12!GO:0006464;protein modification process;7.6129566966692e-12!GO:0031965;nuclear membrane;1.8170414680517e-11!GO:0005524;ATP binding;2.07915284269832e-11!GO:0006974;response to DNA damage stimulus;2.93945980107831e-11!GO:0000278;mitotic cell cycle;3.02499366506276e-11!GO:0032559;adenyl ribonucleotide binding;4.30744717500196e-11!GO:0016604;nuclear body;4.56765587435907e-11!GO:0030554;adenyl nucleotide binding;5.25568589066929e-11!GO:0006413;translational initiation;6.02286835112221e-11!GO:0009055;electron carrier activity;7.22397181523624e-11!GO:0003712;transcription cofactor activity;8.4981301809917e-11!GO:0044453;nuclear membrane part;2.08226413319143e-10!GO:0012501;programmed cell death;3.07278186592039e-10!GO:0009259;ribonucleotide metabolic process;3.1287726183413e-10!GO:0006163;purine nucleotide metabolic process;3.13247268078151e-10!GO:0042623;ATPase activity, coupled;3.20897937601708e-10!GO:0016887;ATPase activity;4.83200778345919e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.1276315804493e-10!GO:0006446;regulation of translational initiation;6.18634457176862e-10!GO:0008565;protein transporter activity;6.66699009514179e-10!GO:0006915;apoptosis;6.85458198589874e-10!GO:0048523;negative regulation of cellular process;6.90574561750635e-10!GO:0009150;purine ribonucleotide metabolic process;8.09007683020431e-10!GO:0043687;post-translational protein modification;1.06758271819776e-09!GO:0006913;nucleocytoplasmic transport;1.65211086851625e-09!GO:0008219;cell death;2.19323189750047e-09!GO:0016265;death;2.19323189750047e-09!GO:0006164;purine nucleotide biosynthetic process;2.81952257694433e-09!GO:0051169;nuclear transport;3.60347349683454e-09!GO:0009199;ribonucleoside triphosphate metabolic process;3.92462715924671e-09!GO:0009141;nucleoside triphosphate metabolic process;4.77680331725502e-09!GO:0016607;nuclear speck;5.3891604418624e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.8653510659919e-09!GO:0005768;endosome;5.87965426018715e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.90887714699226e-09!GO:0009144;purine nucleoside triphosphate metabolic process;5.90887714699226e-09!GO:0006461;protein complex assembly;6.08838959080952e-09!GO:0006281;DNA repair;6.39826352699813e-09!GO:0009152;purine ribonucleotide biosynthetic process;7.12105337220867e-09!GO:0006366;transcription from RNA polymerase II promoter;7.68589915184564e-09!GO:0009260;ribonucleotide biosynthetic process;8.02284303314435e-09!GO:0044431;Golgi apparatus part;9.20049935031988e-09!GO:0008639;small protein conjugating enzyme activity;1.43239592125891e-08!GO:0019829;cation-transporting ATPase activity;1.4462682556157e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.45369354578431e-08!GO:0050794;regulation of cellular process;1.45369354578431e-08!GO:0004386;helicase activity;1.74120304282853e-08!GO:0009056;catabolic process;1.75079388299473e-08!GO:0030120;vesicle coat;1.80611583324271e-08!GO:0030662;coated vesicle membrane;1.80611583324271e-08!GO:0015986;ATP synthesis coupled proton transport;1.81383403265321e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.81383403265321e-08!GO:0009060;aerobic respiration;1.91354963707621e-08!GO:0005788;endoplasmic reticulum lumen;1.98161251944395e-08!GO:0051276;chromosome organization and biogenesis;2.20611630376437e-08!GO:0017038;protein import;2.27526927036737e-08!GO:0009719;response to endogenous stimulus;2.33864697295705e-08!GO:0045333;cellular respiration;2.40808543538507e-08!GO:0004842;ubiquitin-protein ligase activity;2.54617579060953e-08!GO:0005694;chromosome;2.72192340380826e-08!GO:0048519;negative regulation of biological process;2.83011135447657e-08!GO:0019787;small conjugating protein ligase activity;2.8673294936318e-08!GO:0046034;ATP metabolic process;2.95117740948702e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;3.28459220272667e-08!GO:0051726;regulation of cell cycle;3.78231487084318e-08!GO:0000074;regulation of progression through cell cycle;3.91098570509664e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.47751757153336e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.47751757153336e-08!GO:0006399;tRNA metabolic process;4.61766501276859e-08!GO:0005643;nuclear pore;5.15463884180402e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.5232990240066e-08!GO:0006364;rRNA processing;5.99755497170564e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.71545701917201e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.71545701917201e-08!GO:0006260;DNA replication;8.01967553703435e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.47426156812573e-08!GO:0048475;coated membrane;8.63878236028803e-08!GO:0030117;membrane coat;8.63878236028803e-08!GO:0016491;oxidoreductase activity;9.12139073955067e-08!GO:0065002;intracellular protein transport across a membrane;9.14555203723725e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.88921724987259e-08!GO:0006323;DNA packaging;1.0088895274336e-07!GO:0051188;cofactor biosynthetic process;1.03171045613907e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.05901769143068e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.05901769143068e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.05901769143068e-07!GO:0000087;M phase of mitotic cell cycle;1.1076071917926e-07!GO:0008026;ATP-dependent helicase activity;1.31269368042263e-07!GO:0016072;rRNA metabolic process;1.31269368042263e-07!GO:0007067;mitosis;1.59694312574814e-07!GO:0030532;small nuclear ribonucleoprotein complex;2.00871529156325e-07!GO:0043038;amino acid activation;2.17875442280852e-07!GO:0006418;tRNA aminoacylation for protein translation;2.17875442280852e-07!GO:0043039;tRNA aminoacylation;2.17875442280852e-07!GO:0051246;regulation of protein metabolic process;2.65623885236919e-07!GO:0016881;acid-amino acid ligase activity;3.16700337117674e-07!GO:0006754;ATP biosynthetic process;3.17221603053998e-07!GO:0006753;nucleoside phosphate metabolic process;3.17221603053998e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.27874540085332e-07!GO:0031988;membrane-bound vesicle;3.5092811051189e-07!GO:0022403;cell cycle phase;3.58768693632992e-07!GO:0044427;chromosomal part;3.84804472689747e-07!GO:0006099;tricarboxylic acid cycle;4.99115180018706e-07!GO:0046356;acetyl-CoA catabolic process;4.99115180018706e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.2883402356288e-07!GO:0065004;protein-DNA complex assembly;6.75209185773476e-07!GO:0000139;Golgi membrane;7.75241128415227e-07!GO:0050789;regulation of biological process;8.89265823558509e-07!GO:0043566;structure-specific DNA binding;1.11209179610802e-06!GO:0005773;vacuole;1.17972177675403e-06!GO:0007005;mitochondrion organization and biogenesis;1.31864314198229e-06!GO:0003924;GTPase activity;1.33896685139655e-06!GO:0005798;Golgi-associated vesicle;1.33896685139655e-06!GO:0051301;cell division;1.34568535456771e-06!GO:0006916;anti-apoptosis;1.5117603134832e-06!GO:0051187;cofactor catabolic process;1.58007954448827e-06!GO:0046930;pore complex;1.65036064479409e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.65807869581319e-06!GO:0009117;nucleotide metabolic process;1.68933656966313e-06!GO:0031252;leading edge;1.84218363764847e-06!GO:0044440;endosomal part;1.92887763367692e-06!GO:0010008;endosome membrane;1.92887763367692e-06!GO:0006403;RNA localization;2.02999837884671e-06!GO:0003697;single-stranded DNA binding;2.07739593569353e-06!GO:0016853;isomerase activity;2.16220260504572e-06!GO:0006084;acetyl-CoA metabolic process;2.41199589120032e-06!GO:0043069;negative regulation of programmed cell death;2.49649114653983e-06!GO:0009109;coenzyme catabolic process;2.57189962583608e-06!GO:0050657;nucleic acid transport;2.64454144983963e-06!GO:0051236;establishment of RNA localization;2.64454144983963e-06!GO:0050658;RNA transport;2.64454144983963e-06!GO:0045259;proton-transporting ATP synthase complex;2.700561075994e-06!GO:0031982;vesicle;3.36889093139104e-06!GO:0031324;negative regulation of cellular metabolic process;3.54643470537011e-06!GO:0031410;cytoplasmic vesicle;3.62108260470588e-06!GO:0005667;transcription factor complex;3.68481587916918e-06!GO:0043066;negative regulation of apoptosis;3.73538860424571e-06!GO:0005770;late endosome;3.84824686263097e-06!GO:0000245;spliceosome assembly;3.84824686263097e-06!GO:0016564;transcription repressor activity;3.85078041669799e-06!GO:0042981;regulation of apoptosis;4.07582437855781e-06!GO:0043067;regulation of programmed cell death;4.07582437855781e-06!GO:0015630;microtubule cytoskeleton;4.41697083869589e-06!GO:0006091;generation of precursor metabolites and energy;4.57547228067713e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.06231804504543e-06!GO:0006752;group transfer coenzyme metabolic process;5.45058864201582e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.48765735345087e-06!GO:0051170;nuclear import;5.65871750703415e-06!GO:0009108;coenzyme biosynthetic process;5.82886486427086e-06!GO:0006333;chromatin assembly or disassembly;5.8713389491056e-06!GO:0000151;ubiquitin ligase complex;6.12573007887118e-06!GO:0006793;phosphorus metabolic process;6.63511939333666e-06!GO:0006796;phosphate metabolic process;6.63511939333666e-06!GO:0003714;transcription corepressor activity;7.0428146423298e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.2737047274843e-06!GO:0016859;cis-trans isomerase activity;8.47610305381671e-06!GO:0006606;protein import into nucleus;9.40347528018907e-06!GO:0005762;mitochondrial large ribosomal subunit;9.40347528018907e-06!GO:0000315;organellar large ribosomal subunit;9.40347528018907e-06!GO:0000785;chromatin;9.66370715928289e-06!GO:0006613;cotranslational protein targeting to membrane;1.08662208400146e-05!GO:0016740;transferase activity;1.10012020471285e-05!GO:0032446;protein modification by small protein conjugation;1.11473056418041e-05!GO:0008654;phospholipid biosynthetic process;1.11905144454221e-05!GO:0003713;transcription coactivator activity;1.14411398771896e-05!GO:0000323;lytic vacuole;1.18103703203365e-05!GO:0005764;lysosome;1.18103703203365e-05!GO:0045786;negative regulation of progression through cell cycle;1.20803122666648e-05!GO:0004298;threonine endopeptidase activity;1.30577054658949e-05!GO:0016567;protein ubiquitination;1.3178293962611e-05!GO:0019867;outer membrane;1.56688502658929e-05!GO:0008092;cytoskeletal protein binding;1.6548047794261e-05!GO:0005769;early endosome;1.71947951216856e-05!GO:0019899;enzyme binding;1.88319156092622e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.99464920570243e-05!GO:0031968;organelle outer membrane;2.10586274222029e-05!GO:0009892;negative regulation of metabolic process;2.23136769332565e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.25876381853078e-05!GO:0030133;transport vesicle;2.31557172997639e-05!GO:0016787;hydrolase activity;3.1462560967974e-05!GO:0016563;transcription activator activity;3.28573578991433e-05!GO:0030867;rough endoplasmic reticulum membrane;3.50731713807658e-05!GO:0019843;rRNA binding;3.57925125581847e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.74982821769996e-05!GO:0016310;phosphorylation;3.98616095194912e-05!GO:0043623;cellular protein complex assembly;4.0134416533078e-05!GO:0051789;response to protein stimulus;4.07018440114928e-05!GO:0006986;response to unfolded protein;4.07018440114928e-05!GO:0016568;chromatin modification;4.12384689089301e-05!GO:0016779;nucleotidyltransferase activity;4.36527179833133e-05!GO:0045454;cell redox homeostasis;4.44592529046067e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.55960767799998e-05!GO:0005791;rough endoplasmic reticulum;5.32755953252546e-05!GO:0000279;M phase;5.37357900125052e-05!GO:0003724;RNA helicase activity;5.3939096007168e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.40163334596055e-05!GO:0051028;mRNA transport;5.41499486792075e-05!GO:0008361;regulation of cell size;6.01126724306714e-05!GO:0005813;centrosome;6.22251122900504e-05!GO:0005905;coated pit;6.85865440544997e-05!GO:0030036;actin cytoskeleton organization and biogenesis;7.24219625706171e-05!GO:0016049;cell growth;8.52550525817101e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.57176747346896e-05!GO:0006334;nucleosome assembly;9.47388305287428e-05!GO:0005741;mitochondrial outer membrane;9.47877265852652e-05!GO:0033116;ER-Golgi intermediate compartment membrane;9.63204699494261e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;9.87805197219437e-05!GO:0005048;signal sequence binding;0.000105111235365897!GO:0007010;cytoskeleton organization and biogenesis;0.00011533633585888!GO:0005815;microtubule organizing center;0.000121287041820247!GO:0016481;negative regulation of transcription;0.000123857387034863!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000125163130966004!GO:0030029;actin filament-based process;0.000145685538980852!GO:0051427;hormone receptor binding;0.000162899751669842!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000195100635549336!GO:0031497;chromatin assembly;0.000201542781251484!GO:0044262;cellular carbohydrate metabolic process;0.000220087120962874!GO:0001558;regulation of cell growth;0.000230119198290786!GO:0043021;ribonucleoprotein binding;0.000239287741929503!GO:0051329;interphase of mitotic cell cycle;0.000247822623159779!GO:0000314;organellar small ribosomal subunit;0.000260621344919443!GO:0005763;mitochondrial small ribosomal subunit;0.000260621344919443!GO:0019222;regulation of metabolic process;0.000273056229634506!GO:0006612;protein targeting to membrane;0.000278243996957562!GO:0005525;GTP binding;0.000293169987434421!GO:0035257;nuclear hormone receptor binding;0.000334113018785243!GO:0005885;Arp2/3 protein complex;0.000346229812667173!GO:0046474;glycerophospholipid biosynthetic process;0.000349019874356043!GO:0065007;biological regulation;0.000351096206565197!GO:0008250;oligosaccharyl transferase complex;0.000380280007785222!GO:0004576;oligosaccharyl transferase activity;0.000384393867161146!GO:0016044;membrane organization and biogenesis;0.000386455146426948!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000428347108241559!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00044100320518003!GO:0015399;primary active transmembrane transporter activity;0.00044100320518003!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000454383353143537!GO:0051325;interphase;0.000463517964246245!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000490881618826497!GO:0048522;positive regulation of cellular process;0.000508127596418777!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000512612281443056!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000564375866819896!GO:0003729;mRNA binding;0.000622002222588094!GO:0003899;DNA-directed RNA polymerase activity;0.000630997023525698!GO:0030663;COPI coated vesicle membrane;0.000641284140789613!GO:0030126;COPI vesicle coat;0.000641284140789613!GO:0005819;spindle;0.000641309886118426!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000712174730777822!GO:0051920;peroxiredoxin activity;0.000883607371195951!GO:0043681;protein import into mitochondrion;0.000968059867719316!GO:0006626;protein targeting to mitochondrion;0.000985372969926583!GO:0030658;transport vesicle membrane;0.000985372969926583!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00103449477846226!GO:0046467;membrane lipid biosynthetic process;0.00105985814314661!GO:0030132;clathrin coat of coated pit;0.00107293724518252!GO:0007243;protein kinase cascade;0.00109826658647772!GO:0018196;peptidyl-asparagine modification;0.00114235355209316!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00114235355209316!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00116991369435642!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00116991369435642!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00116991369435642!GO:0001726;ruffle;0.00119615536977423!GO:0030137;COPI-coated vesicle;0.00126707286052229!GO:0007050;cell cycle arrest;0.0012874745222865!GO:0051252;regulation of RNA metabolic process;0.00129913694891816!GO:0008047;enzyme activator activity;0.00131663228370249!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00138012410792092!GO:0006891;intra-Golgi vesicle-mediated transport;0.00147644749905075!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0014771311261231!GO:0006261;DNA-dependent DNA replication;0.00150040849614346!GO:0006414;translational elongation;0.00152533859827617!GO:0008186;RNA-dependent ATPase activity;0.00157627565608265!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0015850130428671!GO:0006402;mRNA catabolic process;0.00169752207256788!GO:0004177;aminopeptidase activity;0.00172562293519113!GO:0008610;lipid biosynthetic process;0.0017633621322544!GO:0022890;inorganic cation transmembrane transporter activity;0.00176496477065447!GO:0032561;guanyl ribonucleotide binding;0.00182790127882045!GO:0019001;guanyl nucleotide binding;0.00182790127882045!GO:0000059;protein import into nucleus, docking;0.00184613200326479!GO:0031072;heat shock protein binding;0.00193301587848718!GO:0009165;nucleotide biosynthetic process;0.00199961951533211!GO:0043284;biopolymer biosynthetic process;0.00202253603669793!GO:0043488;regulation of mRNA stability;0.0020610896320346!GO:0043487;regulation of RNA stability;0.0020610896320346!GO:0003779;actin binding;0.00208871785753402!GO:0030176;integral to endoplasmic reticulum membrane;0.00227698710144678!GO:0048500;signal recognition particle;0.00237377571945898!GO:0065009;regulation of a molecular function;0.00237377571945898!GO:0008139;nuclear localization sequence binding;0.00239567938400357!GO:0048471;perinuclear region of cytoplasm;0.00244384325555777!GO:0046489;phosphoinositide biosynthetic process;0.00244384325555777!GO:0006839;mitochondrial transport;0.00246474659109551!GO:0030660;Golgi-associated vesicle membrane;0.00254266449506714!GO:0015992;proton transport;0.00259533150442046!GO:0030118;clathrin coat;0.00259659720157211!GO:0003690;double-stranded DNA binding;0.00259659720157211!GO:0042802;identical protein binding;0.00265502934165935!GO:0006818;hydrogen transport;0.00276604154583424!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0029390774822688!GO:0001952;regulation of cell-matrix adhesion;0.00299061349187744!GO:0016363;nuclear matrix;0.00309280380684276!GO:0030134;ER to Golgi transport vesicle;0.00317093018675186!GO:0007006;mitochondrial membrane organization and biogenesis;0.00318094462386494!GO:0051287;NAD binding;0.00324726904802094!GO:0016197;endosome transport;0.00332353272258827!GO:0043492;ATPase activity, coupled to movement of substances;0.00336017464819998!GO:0030027;lamellipodium;0.00339566162578442!GO:0005774;vacuolar membrane;0.00350967671776815!GO:0044452;nucleolar part;0.00365090850887165!GO:0006650;glycerophospholipid metabolic process;0.00377954145446271!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00406399012983657!GO:0051168;nuclear export;0.0041252010586023!GO:0004004;ATP-dependent RNA helicase activity;0.00413646789353054!GO:0031902;late endosome membrane;0.00422062411380524!GO:0030127;COPII vesicle coat;0.00424905072135455!GO:0012507;ER to Golgi transport vesicle membrane;0.00424905072135455!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00429480679693274!GO:0015002;heme-copper terminal oxidase activity;0.00429480679693274!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00429480679693274!GO:0004129;cytochrome-c oxidase activity;0.00429480679693274!GO:0006509;membrane protein ectodomain proteolysis;0.00467917395045667!GO:0033619;membrane protein proteolysis;0.00467917395045667!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00471157181914116!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00471157181914116!GO:0006740;NADPH regeneration;0.00477054735758928!GO:0006098;pentose-phosphate shunt;0.00477054735758928!GO:0016126;sterol biosynthetic process;0.00481459731668827!GO:0051128;regulation of cellular component organization and biogenesis;0.00482420176729294!GO:0017166;vinculin binding;0.00482420176729294!GO:0040008;regulation of growth;0.00504294963697492!GO:0031625;ubiquitin protein ligase binding;0.00532194248851131!GO:0006383;transcription from RNA polymerase III promoter;0.00544872111064849!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00545267662857012!GO:0030659;cytoplasmic vesicle membrane;0.00545267662857012!GO:0035258;steroid hormone receptor binding;0.00545267662857012!GO:0033673;negative regulation of kinase activity;0.00545267662857012!GO:0006469;negative regulation of protein kinase activity;0.00545267662857012!GO:0005096;GTPase activator activity;0.00559719412940557!GO:0006401;RNA catabolic process;0.00565295179909998!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00569550506446798!GO:0045047;protein targeting to ER;0.00569550506446798!GO:0031543;peptidyl-proline dioxygenase activity;0.00572897043205834!GO:0008180;signalosome;0.00590356511387503!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00597519004463658!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00609413773457807!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00609413773457807!GO:0006595;polyamine metabolic process;0.00613044364335167!GO:0007051;spindle organization and biogenesis;0.00620977598339815!GO:0030521;androgen receptor signaling pathway;0.0062383777507735!GO:0007264;small GTPase mediated signal transduction;0.0063506147364097!GO:0000075;cell cycle checkpoint;0.00636307889944963!GO:0008312;7S RNA binding;0.00657848412596817!GO:0006352;transcription initiation;0.00670221353758884!GO:0006979;response to oxidative stress;0.00672825146002501!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00676477251386134!GO:0051348;negative regulation of transferase activity;0.00695761712604939!GO:0046483;heterocycle metabolic process;0.00703734305400127!GO:0016408;C-acyltransferase activity;0.00706575081582504!GO:0030880;RNA polymerase complex;0.00715247247897296!GO:0019798;procollagen-proline dioxygenase activity;0.0072440406620001!GO:0045941;positive regulation of transcription;0.00736231257829338!GO:0006950;response to stress;0.00747153943809141!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00751689838780689!GO:0005869;dynactin complex;0.00759027376485062!GO:0030041;actin filament polymerization;0.00777787152857571!GO:0031418;L-ascorbic acid binding;0.00789134748146154!GO:0007034;vacuolar transport;0.00793435904348561!GO:0005684;U2-dependent spliceosome;0.00819702578254309!GO:0048468;cell development;0.00819702578254309!GO:0044433;cytoplasmic vesicle part;0.0089084525409879!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00898369856160086!GO:0048487;beta-tubulin binding;0.00899474315627769!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00903650238913535!GO:0005637;nuclear inner membrane;0.00910882894629826!GO:0030125;clathrin vesicle coat;0.00911414195581911!GO:0030665;clathrin coated vesicle membrane;0.00911414195581911!GO:0003678;DNA helicase activity;0.00920596323969076!GO:0044437;vacuolar part;0.00923047751719226!GO:0051052;regulation of DNA metabolic process;0.0097012632265644!GO:0051087;chaperone binding;0.0097108281987047!GO:0030119;AP-type membrane coat adaptor complex;0.00980275316680313!GO:0005765;lysosomal membrane;0.00989307732845272!GO:0043022;ribosome binding;0.0100709573839676!GO:0004674;protein serine/threonine kinase activity;0.0102898059830975!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0104634888539572!GO:0005862;muscle thin filament tropomyosin;0.0110656908766246!GO:0048144;fibroblast proliferation;0.0111516402360941!GO:0048145;regulation of fibroblast proliferation;0.0111516402360941!GO:0006118;electron transport;0.0111757015319716!GO:0045893;positive regulation of transcription, DNA-dependent;0.0111901447647141!GO:0045045;secretory pathway;0.0119762081015396!GO:0045892;negative regulation of transcription, DNA-dependent;0.012069606078776!GO:0051540;metal cluster binding;0.0120729115757839!GO:0051536;iron-sulfur cluster binding;0.0120729115757839!GO:0007041;lysosomal transport;0.0121695098383433!GO:0003746;translation elongation factor activity;0.0125177672063573!GO:0050662;coenzyme binding;0.0126998752301763!GO:0015631;tubulin binding;0.0130174765433283!GO:0000339;RNA cap binding;0.013053960892185!GO:0000049;tRNA binding;0.0130812020468551!GO:0030518;steroid hormone receptor signaling pathway;0.0131889806206793!GO:0051539;4 iron, 4 sulfur cluster binding;0.0131959879026793!GO:0031323;regulation of cellular metabolic process;0.0132231057561018!GO:0006778;porphyrin metabolic process;0.0132231057561018!GO:0033013;tetrapyrrole metabolic process;0.0132231057561018!GO:0030032;lamellipodium biogenesis;0.0137537908681077!GO:0006897;endocytosis;0.01398004538645!GO:0010324;membrane invagination;0.01398004538645!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0142209492209526!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0142516510420598!GO:0000428;DNA-directed RNA polymerase complex;0.0142516510420598!GO:0030833;regulation of actin filament polymerization;0.0142924884552438!GO:0048146;positive regulation of fibroblast proliferation;0.0143707286186807!GO:0007040;lysosome organization and biogenesis;0.014545548142531!GO:0000082;G1/S transition of mitotic cell cycle;0.0146426651658047!GO:0008168;methyltransferase activity;0.0148719851357173!GO:0006302;double-strand break repair;0.0149648267012567!GO:0022415;viral reproductive process;0.0149712229290308!GO:0006892;post-Golgi vesicle-mediated transport;0.0151899131764165!GO:0005099;Ras GTPase activator activity;0.0152749188660937!GO:0031901;early endosome membrane;0.0153349207757752!GO:0016741;transferase activity, transferring one-carbon groups;0.0153681402929005!GO:0030131;clathrin adaptor complex;0.0154980884944152!GO:0031529;ruffle organization and biogenesis;0.0158999934421038!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0159088678271352!GO:0033043;regulation of organelle organization and biogenesis;0.0159088678271352!GO:0006695;cholesterol biosynthetic process;0.0159286446854192!GO:0003711;transcription elongation regulator activity;0.0160129913470428!GO:0016272;prefoldin complex;0.0161000496550631!GO:0005832;chaperonin-containing T-complex;0.0161319000594421!GO:0012506;vesicle membrane;0.0161768570443945!GO:0007033;vacuole organization and biogenesis;0.0162988212167805!GO:0035035;histone acetyltransferase binding;0.0162988212167805!GO:0006007;glucose catabolic process;0.016348808405262!GO:0005874;microtubule;0.0170804555616954!GO:0031124;mRNA 3'-end processing;0.0173450202688038!GO:0006497;protein amino acid lipidation;0.0175677354411387!GO:0003684;damaged DNA binding;0.0175747558686454!GO:0003702;RNA polymerase II transcription factor activity;0.0181414013486975!GO:0050681;androgen receptor binding;0.0182098141432202!GO:0008022;protein C-terminus binding;0.0187636433322858!GO:0005657;replication fork;0.0187981172502582!GO:0043433;negative regulation of transcription factor activity;0.0190735210616146!GO:0000776;kinetochore;0.0194636255127034!GO:0006289;nucleotide-excision repair;0.0196467087111729!GO:0008154;actin polymerization and/or depolymerization;0.0198184445096904!GO:0048518;positive regulation of biological process;0.0198469032369776!GO:0030384;phosphoinositide metabolic process;0.019873893065475!GO:0008033;tRNA processing;0.0200410433156495!GO:0042158;lipoprotein biosynthetic process;0.0205366130700687!GO:0006506;GPI anchor biosynthetic process;0.0208438737923684!GO:0008094;DNA-dependent ATPase activity;0.0209885956228085!GO:0008286;insulin receptor signaling pathway;0.0211006180790255!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0212763033124266!GO:0006350;transcription;0.0213394016736209!GO:0006643;membrane lipid metabolic process;0.0213394016736209!GO:0032508;DNA duplex unwinding;0.021645086823372!GO:0032392;DNA geometric change;0.021645086823372!GO:0009116;nucleoside metabolic process;0.022015387228337!GO:0006607;NLS-bearing substrate import into nucleus;0.0231654641313277!GO:0032984;macromolecular complex disassembly;0.0240791907249682!GO:0042168;heme metabolic process;0.0243288374338958!GO:0046519;sphingoid metabolic process;0.0244918300338452!GO:0006739;NADP metabolic process;0.0245733594435846!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0246399023588331!GO:0045792;negative regulation of cell size;0.0246759324767682!GO:0050811;GABA receptor binding;0.0253688174872311!GO:0051101;regulation of DNA binding;0.0258017374193474!GO:0006672;ceramide metabolic process;0.0270127163463594!GO:0033559;unsaturated fatty acid metabolic process;0.0272602599961122!GO:0006636;unsaturated fatty acid biosynthetic process;0.0272602599961122!GO:0006354;RNA elongation;0.0272602599961122!GO:0015629;actin cytoskeleton;0.0273360309109905!GO:0030308;negative regulation of cell growth;0.0274474335071035!GO:0006779;porphyrin biosynthetic process;0.0274474335071035!GO:0033014;tetrapyrrole biosynthetic process;0.0274474335071035!GO:0050790;regulation of catalytic activity;0.0279737644157848!GO:0022408;negative regulation of cell-cell adhesion;0.0283516896833806!GO:0031301;integral to organelle membrane;0.028482554732211!GO:0003682;chromatin binding;0.028482554732211!GO:0000287;magnesium ion binding;0.0286050902540162!GO:0000209;protein polyubiquitination;0.0287899449010924!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0288326122970372!GO:0046870;cadmium ion binding;0.0290477023170353!GO:0006505;GPI anchor metabolic process;0.0290559059432594!GO:0000786;nucleosome;0.0290659229859126!GO:0030508;thiol-disulfide exchange intermediate activity;0.0290962870634709!GO:0008632;apoptotic program;0.0290962870634709!GO:0003756;protein disulfide isomerase activity;0.0293977880645969!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0293977880645969!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0294599211404908!GO:0007265;Ras protein signal transduction;0.0298277085750128!GO:0006376;mRNA splice site selection;0.0298277085750128!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0298277085750128!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0301273861743925!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0302497236428871!GO:0007160;cell-matrix adhesion;0.0305335115849441!GO:0000792;heterochromatin;0.0312821089005768!GO:0006268;DNA unwinding during replication;0.0314948077909098!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0315318879423495!GO:0009303;rRNA transcription;0.0316319614748689!GO:0006611;protein export from nucleus;0.0326882134689751!GO:0019752;carboxylic acid metabolic process;0.0327304063188793!GO:0031589;cell-substrate adhesion;0.032820657523852!GO:0031123;RNA 3'-end processing;0.032820657523852!GO:0005758;mitochondrial intermembrane space;0.0328460053244298!GO:0005100;Rho GTPase activator activity;0.0328460053244298!GO:0005801;cis-Golgi network;0.0334599227017289!GO:0004287;prolyl oligopeptidase activity;0.0338381248204143!GO:0006082;organic acid metabolic process;0.0339284137751028!GO:0030140;trans-Golgi network transport vesicle;0.0340100936021444!GO:0009112;nucleobase metabolic process;0.0340100936021444!GO:0016860;intramolecular oxidoreductase activity;0.0349109404547966!GO:0051059;NF-kappaB binding;0.0352906925682578!GO:0043241;protein complex disassembly;0.03586321981383!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0358755577620733!GO:0007021;tubulin folding;0.0365189440298254!GO:0007052;mitotic spindle organization and biogenesis;0.0367654476575788!GO:0000775;chromosome, pericentric region;0.0367978928116947!GO:0043624;cellular protein complex disassembly;0.0368284104513375!GO:0004527;exonuclease activity;0.0368973661987671!GO:0006635;fatty acid beta-oxidation;0.0369633779412602!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0378857307099501!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0380655952762488!GO:0030984;kininogen binding;0.0393383656552956!GO:0004213;cathepsin B activity;0.0393383656552956!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0393383656552956!GO:0030911;TPR domain binding;0.0394969600130426!GO:0006417;regulation of translation;0.0394969600130426!GO:0045334;clathrin-coated endocytic vesicle;0.0396479742262078!GO:0019206;nucleoside kinase activity;0.0397860356985263!GO:0008147;structural constituent of bone;0.0399303864870298!GO:0047485;protein N-terminus binding;0.0405600155362742!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0410252719581461!GO:0007030;Golgi organization and biogenesis;0.0410581162240477!GO:0005784;translocon complex;0.0412017025254201!GO:0016251;general RNA polymerase II transcription factor activity;0.0412490700246664!GO:0030522;intracellular receptor-mediated signaling pathway;0.0412974054672871!GO:0005811;lipid particle;0.0416640028792582!GO:0050178;phenylpyruvate tautomerase activity;0.0416640028792582!GO:0016791;phosphoric monoester hydrolase activity;0.0420794727406776!GO:0040029;regulation of gene expression, epigenetic;0.0421021139353576!GO:0008538;proteasome activator activity;0.0423871208261371!GO:0004003;ATP-dependent DNA helicase activity;0.0424806008966551!GO:0051098;regulation of binding;0.0427089238289335!GO:0006405;RNA export from nucleus;0.0444926169502919!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.044864837963442!GO:0031371;ubiquitin conjugating enzyme complex;0.0458722894840929!GO:0001953;negative regulation of cell-matrix adhesion;0.0459164515967138!GO:0030100;regulation of endocytosis;0.0460214231799971!GO:0008287;protein serine/threonine phosphatase complex;0.0460214231799971!GO:0051235;maintenance of localization;0.0471689862844865!GO:0007569;cell aging;0.0472093138632739!GO:0005669;transcription factor TFIID complex;0.0474528773209259!GO:0015036;disulfide oxidoreductase activity;0.0477446823272288!GO:0016584;nucleosome positioning;0.0484253674721757!GO:0006378;mRNA polyadenylation;0.0486902305533745!GO:0022406;membrane docking;0.049353479341095!GO:0048278;vesicle docking;0.049353479341095!GO:0006783;heme biosynthetic process;0.049353479341095!GO:0009166;nucleotide catabolic process;0.0496515353722254!GO:0031461;cullin-RING ubiquitin ligase complex;0.0496708917451354!GO:0006275;regulation of DNA replication;0.0498927331346746
|sample_id=11322
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skeletal muscle
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11322-117D8;search_select_hide=table117:FF:11322-117D8
}}
}}

Latest revision as of 17:52, 4 June 2020

Name:Myoblast, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11965
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskeletal muscle
dev stage21 years old adult
sexmale
age21
cell typeskeletal muscle myoblast
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberSKM2
catalog numberSC3525
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005337
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11965 CAGE DRX008368 DRR009240
Accession ID Hg19

Library idBAMCTSS
CNhs11965 DRZ000665 DRZ002050
Accession ID Hg38

Library idBAMCTSS
CNhs11965 DRZ012015 DRZ013400
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005337
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10012.GTTTCG sRNA-Seq DRX037199 DRR041565
Accession ID Hg19

Library idBAMCTSS
SRhi10012.GTTTCG DRZ007207


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0892
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0537
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.261
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.209
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0747
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0596
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0146
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.349
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.341
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.521
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.209
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.422
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0314
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0812
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0812
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth5.693473e-4
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0297
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.209
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0812
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0812
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.891
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.349
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.15
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.422
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0486
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.867
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11965

Jaspar motifP-value
MA0002.20.086
MA0003.10.528
MA0004.10.79
MA0006.10.0309
MA0007.10.0483
MA0009.10.221
MA0014.10.395
MA0017.10.626
MA0018.26.22989e-5
MA0019.10.825
MA0024.10.114
MA0025.17.76347e-6
MA0027.10.924
MA0028.10.755
MA0029.10.523
MA0030.10.00222
MA0031.10.0236
MA0035.25.8786e-4
MA0038.10.0505
MA0039.20.0102
MA0040.10.508
MA0041.10.283
MA0042.10.156
MA0043.11.00173e-6
MA0046.10.283
MA0047.20.133
MA0048.10.0727
MA0050.10.00674
MA0051.10.0247
MA0052.10.0511
MA0055.10.728
MA0057.10.63
MA0058.10.708
MA0059.10.663
MA0060.18.60254e-9
MA0061.10.00363
MA0062.28.39738e-4
MA0065.20.274
MA0066.10.206
MA0067.10.0033
MA0068.10.171
MA0069.10.341
MA0070.10.474
MA0071.10.832
MA0072.10.264
MA0073.10.867
MA0074.10.0881
MA0076.10.687
MA0077.10.646
MA0078.10.456
MA0079.20.775
MA0080.22.77344e-10
MA0081.10.024
MA0083.10.107
MA0084.10.122
MA0087.10.503
MA0088.10.239
MA0090.10.0117
MA0091.10.0971
MA0092.10.898
MA0093.10.833
MA0099.20.0124
MA0100.10.556
MA0101.15.00857e-6
MA0102.20.235
MA0103.10.00166
MA0104.20.251
MA0105.10.318
MA0106.10.414
MA0107.11.15444e-6
MA0108.20.408
MA0111.10.152
MA0112.20.0787
MA0113.10.415
MA0114.10.492
MA0115.10.398
MA0116.10.658
MA0117.10.323
MA0119.10.0124
MA0122.10.427
MA0124.10.294
MA0125.10.501
MA0131.10.403
MA0135.10.79
MA0136.11.56739e-11
MA0137.20.0976
MA0138.20.294
MA0139.10.668
MA0140.10.00449
MA0141.10.173
MA0142.10.00851
MA0143.10.556
MA0144.10.448
MA0145.10.47
MA0146.10.717
MA0147.10.533
MA0148.10.145
MA0149.10.491
MA0150.10.0254
MA0152.10.181
MA0153.10.934
MA0154.10.503
MA0155.10.658
MA0156.12.66152e-8
MA0157.10.323
MA0159.10.586
MA0160.10.189
MA0162.10.375
MA0163.10.0917
MA0164.10.362
MA0258.10.988
MA0259.10.851



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11965

Novel motifP-value
10.699
100.0319
1000.914
1010.651
1020.965
1030.514
1040.596
1050.011
1060.219
1070.161
1080.51
1090.788
110.968
1100.304
1110.715
1120.273
1130.919
1140.535
1150.0693
1160.0692
1170.125
1180.459
1190.665
120.616
1200.0785
1210.809
1220.0029
1230.118
1240.0327
1250.97
1260.96
1270.8
1280.956
1290.383
130.834
1300.81
1310.627
1320.532
1330.817
1340.831
1350.613
1360.0851
1370.106
1380.308
1390.673
140.197
1400.146
1410.113
1420.905
1430.707
1440.587
1450.324
1460.368
1470.207
1480.69
1490.243
150.556
1500.842
1510.784
1520.232
1530.573
1540.779
1550.0449
1560.41
1570.289
1580.00345
1590.378
160.0576
1600.683
1610.482
1620.185
1630.962
1640.44
1650.413
1660.193
1670.983
1680.859
1690.17
170.749
180.995
190.024
20.844
200.86
210.0342
220.34
230.847
240.532
250.273
260.7
270.888
280.283
290.51
30.527
300.533
310.753
322.65898e-8
330.96
340.279
350.957
360.0185
370.072
380.557
390.219
40.0427
400.0326
410.157
420.316
430.713
440.205
450.463
460.57
470.491
480.705
490.281
50.496
500.428
510.751
520.324
530.0631
540.984
550.122
560.905
570.929
580.227
590.285
60.265
600.128
610.428
620.687
630.189
640.296
650.961
660.203
670.924
680.307
690.721
70.305
700.518
710.411
720.259
730.00846
740.214
750.504
760.412
770.0835
780.907
790.0733
80.249
800.0145
810.645
820.832
830.585
840.643
850.513
860.243
870.0756
880.961
890.871
90.936
900.482
910.601
920.675
930.671
940.985
950.942
960.447
970.965
980.166
990.00574



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11965


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0000056 (myoblast)
0000255 (eukaryotic cell)
0000515 (skeletal muscle myoblast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000164 (human skeletal muscle myoblast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000515 (skeletal muscle myoblast)

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