FF:11854-124I9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005197 | |DRA_sample_Accession=CAGE@SAMD00005197 | ||
|accession_numbers=CAGE;DRX008814;DRR009686;DRZ001111;DRZ002496 | |accession_numbers=CAGE;DRX008814;DRR009686;DRZ001111;DRZ002496;DRZ012461;DRZ013846 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0000791,CL:0000084,CL:0000789,CL:0002419,CL:0000624 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr3:130815703..130815721,+!p2@Lef1!2.24!205.28!Lef1;;chr4:48058129..48058179,+!p2@Nr4a3!2.22!299.57!Nr4a3;;chr17:51971932..51971958,-!p2@Satb1!2.14!182.79!Satb1;;chr4:48058047..48058062,+!p1@Nr4a3!2.13!200.93!Nr4a3;;chr11:52096066..52096081,-!p2@Tcf7!2.11!153.05!Tcf7;;chr18:3281725..3281740,-!p3@Crem!2.04!136.37!Crem;;chr4:48058016..48058032,+!p3@Nr4a3!2.00!164.66!Nr4a3;;chr8:87502608..87502623,-!p1@Junb!1.99!1478.29!Junb;;chr11:100683839..100683890,-!p2@Stat5b!1.95!196.57!Stat5b;;chr15:101097270..101097290,+!p1@Nr4a1!1.93!816.03!Nr4a1;;chr18:3281750..3281776,-!p2@Crem!1.91!157.40!Crem;;chr17:51971960..51971979,-!p1@Satb1!1.89!102.28!Satb1;;chrX:7156792..7156811,+!p1@Foxp3!1.87!73.99!Foxp3;;chr1:38721792..38721845,-!p1@Aff3!1.86!89.22!Aff3;;chr11:11590140..11590187,+!p3@Ikzf1!1.83!80.52!Ikzf1;;chr7:31206743..31206761,+!p1@Nfkbid!1.79!81.24!Nfkbid;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.76!71.81!Zbtb11;;chr11:11590117..11590138,+!p4@Ikzf1!1.74!54.40!Ikzf1;;chr11:11584970..11585030,+!p2@Ikzf1!1.72!73.26!Ikzf1;;chr5:134720044..134720103,-!p6@Gtf2i!1.70!48.60!Gtf2i;;chr1:52065508..52065522,+!p2@Stat4!1.68!54.40!Stat4;;chr16:92826249..92826325,-!p1@Runx1!1.67!109.53!Runx1;;chr1:36364590..36364608,+!p1@Arid5a!1.66!426.51!Arid5a;;chr11:52095821..52095836,-!p3@Tcf7!1.66!44.25!Tcf7;;chr11:52096804..52096896,-!p1@Tcf7!1.65!332.22!Tcf7;;chr6:99216488..99216534,-!p2@Foxp1!1.64!116.06!Foxp1;;chr9:32503590..32503680,+!p1@Ets1!1.56!1214.98!Ets1;;chr4:124805061..124805087,-!p1@Zc3h12a!1.55!103.00!Zc3h12a;;chr4:63064364..63064384,-!p1@Akna!1.53!93.57!Akna;;chr13:30841099..30841116,+!p1@Irf4!1.51!48.60!Irf4;;chr4:134708451..134708469,+!p1@Runx3!1.50!53.68!Runx3;;chr12:109242266..109242295,-!p1@Bcl11b!1.48!232.84!Bcl11b;;chr1:52065454..52065495,+!p1@Stat4!1.48!47.87!Stat4;;chr2:126501799..126501832,-!p4@Gabpb1!1.47!28.29!Gabpb1;;chr7:31208285..31208312,+!p3@Nfkbid!1.46!30.47!Nfkbid;;chr18:75527009..75527027,+!p1@Smad7!1.45!545.47!Smad7;;chr1:52065530..52065548,+!p3@Stat4!1.44!26.84!Stat4;;chr3:130813200..130813252,+!p1@Lef1!1.43!112.43!Lef1;;chr11:11585912..11585950,+!p6@Ikzf1!1.43!32.64!Ikzf1;;chr12:87027663..87027678,+!p2@Batf!1.43!26.11!Batf;;chr2:173044380..173044432,-!p1@Zbp1!1.40!55.85!Zbp1;;chr8:74842952..74842970,+!p1@Klf2!1.37!1459.43!Klf2;;chr11:53583544..53583559,+!p1@Irf1!1.37!359.78!Irf1;;chr14:79915425..79915501,+!p1@Elf1!1.37!192.95!Elf1;;chr11:100683794..100683805,-!p4@Stat5b!1.37!22.49!Stat5b;;chr17:51971991..51972003,-!p4@Satb1!1.37!22.49!Satb1;;chr18:75527210..75527215,+!p4@Smad7!1.35!36.27!Smad7;;chr11:98407264..98407295,-!p1@Ikzf3!1.34!21.04!Ikzf3;;chr10:13685585..13685645,+!p2@Hivep2!1.33!68.91!Hivep2;;chr17:71200529..71200556,-!p1@Tgif1!1.31!301.75!Tgif1;;chr12:86814833..86814846,+!p1@Fos!1.30!430.87!Fos;;chr4:32325688..32325777,+!p1@Bach2!1.26!147.97!Bach2;;chr11:11585678..11585745,+!p5@Ikzf1!1.26!24.66!Ikzf1;;chr4:48058102..48058110,+!p5@Nr4a3!1.26!19.58!Nr4a3;;chr18:3337249..3337274,-!p17@Crem!1.25!16.68!Crem;;chr2:56967334..56967366,-!p1@Nr4a2!1.24!33.37!Nr4a2;;chr7:19895354..19895369,-!p1@Fosb!1.23!21.76!Fosb;;chr17:51972530..51972571,-!p7@Satb1!1.23!15.96!Satb1;;chr18:5594197..5594228,+!p7@Zeb1!1.23!15.96!Zeb1;;chr5:92391466..92391471,+!p2@Thap6!1.22!22.49!Thap6;;chr11:100721761..100721851,+!p1@Stat5a!1.21!109.53!Stat5a;;chr18:80909801..80909819,-!p1@Nfatc1!1.21!89.22!Nfatc1;;chr17:51965903..51965926,-!p5@Satb1!1.21!15.23!Satb1;;chr2:9800207..9800234,-!p1@Gata3!1.20!44.97!Gata3;;chr11:100800641..100800669,-!p3@Stat3!1.20!25.39!Stat3;;chr11:23670953..23671028,-!p1@Rel!1.19!81.24!Rel;;chr10:20880629..20880683,-!p1@Myb!1.18!40.62!Myb;;chr8:108583550..108583595,+!p2@Nfatc3!1.17!62.38!Nfatc3;;chr2:91077034..91077078,-!p2@Ddb2!1.17!30.47!Ddb2;;chr11:11590085..11590106,+!p7@Ikzf1!1.17!13.78!Ikzf1;;chr12:56593574..56593592,-!p1@Nfkbia!1.16!685.47!Nfkbia;;chr7:19895384..19895399,-!p2@Fosb!1.16!18.86!Fosb;;chr6:86619104..86619119,-!p1@Mxd1!1.15!105.90!Mxd1;;chr17:51972438..51972463,-!p8@Satb1!1.15!13.06!Satb1;;chr9:51021788..51021802,+!p1@Pou2af1!1.14!15.23!Pou2af1;;chr2:126501847..126501876,-!p5@Gabpb1!1.14!14.51!Gabpb1;;chr11:11586218..11586285,+!p1@Ikzf1!1.13!39.89!Ikzf1;;chr2:173044357..173044377,-!p2@Zbp1!1.12!17.41!Zbp1;;chr5:104182694..104182724,+!p8@Aff1!1.12!15.23!Aff1;;chr2:91076997..91077012,-!p4@Ddb2!1.12!12.33!Ddb2;;chr4:48058196..48058205,+!p4@Nr4a3!1.12!12.33!Nr4a3;;chr11:96976641..96976646,-!p1@Tbx21!1.12!12.33!Tbx21;;chr17:45692676..45692695,+!p2@Nfkbie!1.11!23.94!Nfkbie;;chr18:75527030..75527055,+!p2@Smad7!1.10!73.26!Smad7;;chr3:135354384..135354443,-!p1@Nfkb1!1.10!71.09!Nfkb1;;chr12:85534957..85535017,-!p2@C130039O16Rik!1.10!58.75!C130039O16Rik;;chr7:71083729..71083742,-!p4@Klf13!1.10!20.31!Klf13;;chr12:85560016..85560038,-!p6@C130039O16Rik!1.10!11.61!C130039O16Rik;;chr18:3281015..3281028,-!p18@Crem!1.10!11.61!Crem;;chr3:52072329..52072346,+!p1@Foxo1!1.09!171.19!Foxo1;;chr17:84587167..84587239,-!p2@Zfp36l2!1.09!39.17!Zfp36l2;;chr11:23670750..23670789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1;;chr10:13685899..13685916,+!p1@Hivep2!0.36!21.04!Hivep2;;chr17:46693107..46693137,-!p1@Srf!0.36!19.58!Srf;;chr2:181100089..181100119,+!p1@Zgpat!0.36!18.86!Zgpat;;chr3:94641624..94641645,+!p2@Pogz!0.36!13.78!Pogz;;chr17:23701084..23701128,-!p1@Zfp213!0.36!9.43!Zfp213;;chr4:148275237..148275311,+!p2@Casz1!0.36!7.98!Casz1;;chr10:79896328..79896339,-!p3@Tcf3!0.36!6.53!Tcf3;;chr4:6917921..6917970,-!p2@Tox!0.36!5.08!Tox;;chr6:124959131..124959160,+!p4@Zfp384!0.36!5.08!Zfp384;;chr5:107125807..107125835,-!p3@Zfp644!0.36!5.08!Zfp644;;chr11:96180045..96180059,+!p1@Hoxb4!0.36!2.18!Hoxb4;;chr1:87546583..87546595,+!p1@Sp100!0.36!2.18!Sp100;;chr18:73863393..73863460,-!p1@Smad4!0.35!181.34!Smad4;;chr18:74375851..74375891,+!p1@Cxxc1!0.35!79.06!Cxxc1;;chr6:29997979..29998049,+!p1@Nrf1!0.35!36.99!Nrf1;;chr2:17986191..17986271,+!p1@Mllt10!0.35!34.82!Mllt10;;chr9:30838206..30838285,+!p2@Zbtb44!0.35!26.11!Zbtb44;;chr16:55973924..55973943,+!p1@Rpl24,p1@Zbtb11!0.35!23.94!Zbtb11;;chr16:23988711..23988727,-!p1@Bcl6!0.35!23.21!Bcl6;;chr17:31701694..31701799,+!p1@Pknox1!0.35!21.76!Pknox1;;chr4:102791976..102792008,+!p2@Mier1!0.35!21.76!Mier1;;chr10:82226649..82226694,-!p2@Nfyb!0.35!12.33!Nfyb;;chr8:124900576..124900601,+!p2@Zc3h18!0.35!8.70!Zc3h18;;chr11:102179101..102179130,-!p3@Ubtf!0.35!6.53!Ubtf;;chr17:45570488..45570510,-!p3@Cdc5l!0.35!6.53!Cdc5l;;chr9:21875812..21875860,-!p1@Zfp653!0.35!5.08!Zfp653;;chr7:135020469..135020485,+!p4@Zfp646!0.35!2.90!Zfp646;;chr14:75684203..75684214,+!p4@Zc3h13!0.35!2.90!Zc3h13;;chr10:44178521..44178557,-!p1@Prdm1!0.35!2.90!Prdm1;;chr10:22451100..22451111,-!p5@Tbpl1!0.35!2.90!Tbpl1;;chr10:127080091..127080100,+!p4@Stat6!0.35!2.18!Stat6;;chr8:108583683..108583693,+!p3@Nfatc3!0.35!2.18!Nfatc3;;chr7:51787434..51787448,-!p1@Spib!0.35!2.18!Spib;;chr4:63071779..63071791,-!p3@Akna!0.35!2.18!Akna;;chr4:32325445..32325468,+!p4@Bach2!0.35!2.18!Bach2;;chr7:24867205..24867217,+!p2@Zfp180!0.35!1.45!Zfp180;;chr11:69393894..69393921,+!p1@Trp53!0.34!181.34!Trp53;;chr14:75684150..75684197,+!p1@Zc3h13!0.34!65.28!Zc3h13;;chr6:120314112..120314181,+!p1@Kdm5a!0.34!37.72!Kdm5a;;chr4:116480137..116480178,-!p1@Toe1!0.34!21.04!Toe1;;chr5:20387850..20387869,-!p1@Phtf2!0.34!19.58!Phtf2;;chr4:133801453..133801492,-!p1@Zfp593!0.34!15.96!Zfp593;;chr7:49761065..49761106,-!p1@ENSMUST00000174407,p1@uc009gmb.1!0.34!10.16!Zfp141;;chr3:95021612..95021650,-!p2@Gabpb2!0.34!9.43!Gabpb2;;chr8:108160826..108160879,+!p3@Ctcf!0.34!5.08!Ctcf;;chr19:5637489..5637500,+!p5@Rela!0.34!4.35!Rela;;chr8:74405860..74405905,+!p2@Zfp709!0.34!3.63!Zfp709;;chr3:30993859..30993870,+!p5@Skil!0.34!2.18!Skil;;chr16:84835585..84835596,+!p9@Gabpa!0.34!2.18!Gabpa;;chr5:38611621..38611635,-!p2@Zbtb49!0.34!2.18!Zbtb49;;chr16:55838940..55838966,-!p5@Nfkbiz!0.34!1.45!Nfkbiz;;chr1:69732354..69732402,-!p1@Ikzf2!0.34!1.45!Ikzf2;;chr19:9016355..9016540,+!p1@Mta2!0.33!158.13!Mta2;;chr3:90097085..90097175,+!p1@Gatad2b!0.33!77.61!Gatad2b;;chr12:112277544..112277610,+!p1@Rcor1!0.33!71.81!Rcor1;;chr11:74644437..74644507,+!p1@Mnt!0.33!50.78!Mnt;;chr5:25004592..25004630,-!p2@Mll3!0.33!39.17!Mll3;;chr5:145992626..145992652,+!p2@Zfp655!0.33!13.06!Zfp655;;chr5:139060892..139060911,-!p2@Zfp68!0.33!8.70!Zfp68;;chr8:124900562..124900573,+!p3@Zc3h18!0.33!4.35!Zc3h18;;chr18:84255649..84255661,-!p4@Tshz1!0.33!4.35!Tshz1;;chr1:36364572..36364580,+!p2@Arid5a!0.33!1.45!Arid5a;;chr8:108160409..108160489,+!p1@Ctcf!0.32!108.08!Ctcf;;chr6:28211907..28211943,-!p1@Zfp800!0.32!55.13!Zfp800;;chr6:92041430..92041460,+!p1@Nr2c2!0.32!42.80!Nr2c2;;chr4:119212257..119212303,+!p1@Foxj3!0.32!33.37!Foxj3;;chr2:83484721..83484734,+!p3@Zc3h15!0.32!21.76!Zc3h15;;chr9:56266431..56266488,+!p2@Hmg20a!0.32!18.86!Hmg20a;;chr4:128483347..128483411,-!p2@Zfp362!0.32!13.78!Zfp362;;chr11:16908650..16908690,-!p1@Plek!0.32!10.88!Plek;;chr7:4866835..4866858,+!p2@Zfp628!0.32!6.53!Zfp628;;chr1:64579440..64579451,+!p4@Creb1!0.32!5.80!Creb1;;chrX:103123886..103123922,-!p3@Atrx!0.32!4.35!Atrx;;chr16:3744146..3744157,+!p3@Zfp263!0.32!3.63!Zfp263;;chr16:55973899..55973913,+!p7@Rpl24,p7@Zbtb11!0.32!3.63!Zbtb11;;chr6:47785785..47785796,+!p4@Zfp398!0.32!2.18!Zfp398;;chr4:135700687..135700719,+!p2@Id3!0.32!2.18!Id3;;chr9:30838314..30838336,+!p4@Zbtb44!0.32!1.45!Zbtb44;;chr1:9690398..9690410,-!p2@Mybl1!0.32!1.45!Mybl1;;chr5:22940253..22940289,+!p1@Mll5!0.31!93.57!Mll5;;chr7:26035739..26035757,-!p1@Erf!0.31!45.70!Erf;;chr17:4995902..4995959,+!p1@Arid1b!0.31!42.80!Arid1b;;chr1:181476358..181476391,-!p1@Tfb2m!0.31!28.29!Tfb2m;;chr15:102236700..102236764,+!p1@Sp1!0.31!27.56!Sp1;;chr17:84105551..84105600,+!p1@Mta3!0.31!20.31!Mta3;;chrX:70587953..70587968,+!p1@Zfp275!0.31!19.58!Zfp275;;chr6:124959279..124959335,+!p1@Zfp384!0.31!17.41!Zfp384;;chr5:65194720..65194738,+!p2@Klf3!0.31!9.43!Klf3;;chr4:151401741..151401793,-!p1@Zbtb48!0.31!7.25!Zbtb48;;chr16:17531086..17531109,-!p3@Thap7!0.31!5.08!Thap7;;chr2:181100223..181100237,+!p4@Zgpat!0.31!4.35!Zgpat;;chr2:163028888..163028905,+!p3@Tox2!0.31!1.45!Tox2;;chr5:65203575..65203589,+!p11@Klf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| |expression_enrichment_score=chr3:130815703..130815721,+!p2@Lef1!2.24!205.28!Lef1;;chr4:48058129..48058179,+!p2@Nr4a3!2.22!299.57!Nr4a3;;chr17:51971932..51971958,-!p2@Satb1!2.14!182.79!Satb1;;chr4:48058047..48058062,+!p1@Nr4a3!2.13!200.93!Nr4a3;;chr11:52096066..52096081,-!p2@Tcf7!2.11!153.05!Tcf7;;chr18:3281725..3281740,-!p3@Crem!2.04!136.37!Crem;;chr4:48058016..48058032,+!p3@Nr4a3!2.00!164.66!Nr4a3;;chr8:87502608..87502623,-!p1@Junb!1.99!1478.29!Junb;;chr11:100683839..100683890,-!p2@Stat5b!1.95!196.57!Stat5b;;chr15:101097270..101097290,+!p1@Nr4a1!1.93!816.03!Nr4a1;;chr18:3281750..3281776,-!p2@Crem!1.91!157.40!Crem;;chr17:51971960..51971979,-!p1@Satb1!1.89!102.28!Satb1;;chrX:7156792..7156811,+!p1@Foxp3!1.87!73.99!Foxp3;;chr1:38721792..38721845,-!p1@Aff3!1.86!89.22!Aff3;;chr11:11590140..11590187,+!p3@Ikzf1!1.83!80.52!Ikzf1;;chr7:31206743..31206761,+!p1@Nfkbid!1.79!81.24!Nfkbid;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.76!71.81!Zbtb11;;chr11:11590117..11590138,+!p4@Ikzf1!1.74!54.40!Ikzf1;;chr11:11584970..11585030,+!p2@Ikzf1!1.72!73.26!Ikzf1;;chr5:134720044..134720103,-!p6@Gtf2i!1.70!48.60!Gtf2i;;chr1:52065508..52065522,+!p2@Stat4!1.68!54.40!Stat4;;chr16:92826249..92826325,-!p1@Runx1!1.67!109.53!Runx1;;chr1:36364590..36364608,+!p1@Arid5a!1.66!426.51!Arid5a;;chr11:52095821..52095836,-!p3@Tcf7!1.66!44.25!Tcf7;;chr11:52096804..52096896,-!p1@Tcf7!1.65!332.22!Tcf7;;chr6:99216488..99216534,-!p2@Foxp1!1.64!116.06!Foxp1;;chr9:32503590..32503680,+!p1@Ets1!1.56!1214.98!Ets1;;chr4:124805061..124805087,-!p1@Zc3h12a!1.55!103.00!Zc3h12a;;chr4:63064364..63064384,-!p1@Akna!1.53!93.57!Akna;;chr13:30841099..30841116,+!p1@Irf4!1.51!48.60!Irf4;;chr4:134708451..134708469,+!p1@Runx3!1.50!53.68!Runx3;;chr12:109242266..109242295,-!p1@Bcl11b!1.48!232.84!Bcl11b;;chr1:52065454..52065495,+!p1@Stat4!1.48!47.87!Stat4;;chr2:126501799..126501832,-!p4@Gabpb1!1.47!28.29!Gabpb1;;chr7:31208285..31208312,+!p3@Nfkbid!1.46!30.47!Nfkbid;;chr18:75527009..75527027,+!p1@Smad7!1.45!545.47!Smad7;;chr1:52065530..52065548,+!p3@Stat4!1.44!26.84!Stat4;;chr3:130813200..130813252,+!p1@Lef1!1.43!112.43!Lef1;;chr11:11585912..11585950,+!p6@Ikzf1!1.43!32.64!Ikzf1;;chr12:87027663..87027678,+!p2@Batf!1.43!26.11!Batf;;chr2:173044380..173044432,-!p1@Zbp1!1.40!55.85!Zbp1;;chr8:74842952..74842970,+!p1@Klf2!1.37!1459.43!Klf2;;chr11:53583544..53583559,+!p1@Irf1!1.37!359.78!Irf1;;chr14:79915425..79915501,+!p1@Elf1!1.37!192.95!Elf1;;chr11:100683794..100683805,-!p4@Stat5b!1.37!22.49!Stat5b;;chr17:51971991..51972003,-!p4@Satb1!1.37!22.49!Satb1;;chr18:75527210..75527215,+!p4@Smad7!1.35!36.27!Smad7;;chr11:98407264..98407295,-!p1@Ikzf3!1.34!21.04!Ikzf3;;chr10:13685585..13685645,+!p2@Hivep2!1.33!68.91!Hivep2;;chr17:71200529..71200556,-!p1@Tgif1!1.31!301.75!Tgif1;;chr12:86814833..86814846,+!p1@Fos!1.30!430.87!Fos;;chr4:32325688..32325777,+!p1@Bach2!1.26!147.97!Bach2;;chr11:11585678..11585745,+!p5@Ikzf1!1.26!24.66!Ikzf1;;chr4:48058102..48058110,+!p5@Nr4a3!1.26!19.58!Nr4a3;;chr18:3337249..3337274,-!p17@Crem!1.25!16.68!Crem;;chr2:56967334..56967366,-!p1@Nr4a2!1.24!33.37!Nr4a2;;chr7:19895354..19895369,-!p1@Fosb!1.23!21.76!Fosb;;chr17:51972530..51972571,-!p7@Satb1!1.23!15.96!Satb1;;chr18:5594197..5594228,+!p7@Zeb1!1.23!15.96!Zeb1;;chr5:92391466..92391471,+!p2@Thap6!1.22!22.49!Thap6;;chr11:100721761..100721851,+!p1@Stat5a!1.21!109.53!Stat5a;;chr18:80909801..80909819,-!p1@Nfatc1!1.21!89.22!Nfatc1;;chr17:51965903..51965926,-!p5@Satb1!1.21!15.23!Satb1;;chr2:9800207..9800234,-!p1@Gata3!1.20!44.97!Gata3;;chr11:100800641..100800669,-!p3@Stat3!1.20!25.39!Stat3;;chr11:23670953..23671028,-!p1@Rel!1.19!81.24!Rel;;chr10:20880629..20880683,-!p1@Myb!1.18!40.62!Myb;;chr8:108583550..108583595,+!p2@Nfatc3!1.17!62.38!Nfatc3;;chr2:91077034..91077078,-!p2@Ddb2!1.17!30.47!Ddb2;;chr11:11590085..11590106,+!p7@Ikzf1!1.17!13.78!Ikzf1;;chr12:56593574..56593592,-!p1@Nfkbia!1.16!685.47!Nfkbia;;chr7:19895384..19895399,-!p2@Fosb!1.16!18.86!Fosb;;chr6:86619104..86619119,-!p1@Mxd1!1.15!105.90!Mxd1;;chr17:51972438..51972463,-!p8@Satb1!1.15!13.06!Satb1;;chr9:51021788..51021802,+!p1@Pou2af1!1.14!15.23!Pou2af1;;chr2:126501847..126501876,-!p5@Gabpb1!1.14!14.51!Gabpb1;;chr11:11586218..11586285,+!p1@Ikzf1!1.13!39.89!Ikzf1;;chr2:173044357..173044377,-!p2@Zbp1!1.12!17.41!Zbp1;;chr5:104182694..104182724,+!p8@Aff1!1.12!15.23!Aff1;;chr2:91076997..91077012,-!p4@Ddb2!1.12!12.33!Ddb2;;chr4:48058196..48058205,+!p4@Nr4a3!1.12!12.33!Nr4a3;;chr11:96976641..96976646,-!p1@Tbx21!1.12!12.33!Tbx21;;chr17:45692676..45692695,+!p2@Nfkbie!1.11!23.94!Nfkbie;;chr18:75527030..75527055,+!p2@Smad7!1.10!73.26!Smad7;;chr3:135354384..135354443,-!p1@Nfkb1!1.10!71.09!Nfkb1;;chr12:85534957..85535017,-!p2@C130039O16Rik!1.10!58.75!C130039O16Rik;;chr7:71083729..71083742,-!p4@Klf13!1.10!20.31!Klf13;;chr12:85560016..85560038,-!p6@C130039O16Rik!1.10!11.61!C130039O16Rik;;chr18:3281015..3281028,-!p18@Crem!1.10!11.61!Crem;;chr3:52072329..52072346,+!p1@Foxo1!1.09!171.19!Foxo1;;chr17:84587167..84587239,-!p2@Zfp36l2!1.09!39.17!Zfp36l2;;chr11:23670750..23670789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1;;chr10:13685899..13685916,+!p1@Hivep2!0.36!21.04!Hivep2;;chr17:46693107..46693137,-!p1@Srf!0.36!19.58!Srf;;chr2:181100089..181100119,+!p1@Zgpat!0.36!18.86!Zgpat;;chr3:94641624..94641645,+!p2@Pogz!0.36!13.78!Pogz;;chr17:23701084..23701128,-!p1@Zfp213!0.36!9.43!Zfp213;;chr4:148275237..148275311,+!p2@Casz1!0.36!7.98!Casz1;;chr10:79896328..79896339,-!p3@Tcf3!0.36!6.53!Tcf3;;chr4:6917921..6917970,-!p2@Tox!0.36!5.08!Tox;;chr6:124959131..124959160,+!p4@Zfp384!0.36!5.08!Zfp384;;chr5:107125807..107125835,-!p3@Zfp644!0.36!5.08!Zfp644;;chr11:96180045..96180059,+!p1@Hoxb4!0.36!2.18!Hoxb4;;chr1:87546583..87546595,+!p1@Sp100!0.36!2.18!Sp100;;chr18:73863393..73863460,-!p1@Smad4!0.35!181.34!Smad4;;chr18:74375851..74375891,+!p1@Cxxc1!0.35!79.06!Cxxc1;;chr6:29997979..29998049,+!p1@Nrf1!0.35!36.99!Nrf1;;chr2:17986191..17986271,+!p1@Mllt10!0.35!34.82!Mllt10;;chr9:30838206..30838285,+!p2@Zbtb44!0.35!26.11!Zbtb44;;chr16:55973924..55973943,+!p1@Rpl24,p1@Zbtb11!0.35!23.94!Zbtb11;;chr16:23988711..23988727,-!p1@Bcl6!0.35!23.21!Bcl6;;chr17:31701694..31701799,+!p1@Pknox1!0.35!21.76!Pknox1;;chr4:102791976..102792008,+!p2@Mier1!0.35!21.76!Mier1;;chr10:82226649..82226694,-!p2@Nfyb!0.35!12.33!Nfyb;;chr8:124900576..124900601,+!p2@Zc3h18!0.35!8.70!Zc3h18;;chr11:102179101..102179130,-!p3@Ubtf!0.35!6.53!Ubtf;;chr17:45570488..45570510,-!p3@Cdc5l!0.35!6.53!Cdc5l;;chr9:21875812..21875860,-!p1@Zfp653!0.35!5.08!Zfp653;;chr7:135020469..135020485,+!p4@Zfp646!0.35!2.90!Zfp646;;chr14:75684203..75684214,+!p4@Zc3h13!0.35!2.90!Zc3h13;;chr10:44178521..44178557,-!p1@Prdm1!0.35!2.90!Prdm1;;chr10:22451100..22451111,-!p5@Tbpl1!0.35!2.90!Tbpl1;;chr10:127080091..127080100,+!p4@Stat6!0.35!2.18!Stat6;;chr8:108583683..108583693,+!p3@Nfatc3!0.35!2.18!Nfatc3;;chr7:51787434..51787448,-!p1@Spib!0.35!2.18!Spib;;chr4:63071779..63071791,-!p3@Akna!0.35!2.18!Akna;;chr4:32325445..32325468,+!p4@Bach2!0.35!2.18!Bach2;;chr7:24867205..24867217,+!p2@Zfp180!0.35!1.45!Zfp180;;chr11:69393894..69393921,+!p1@Trp53!0.34!181.34!Trp53;;chr14:75684150..75684197,+!p1@Zc3h13!0.34!65.28!Zc3h13;;chr6:120314112..120314181,+!p1@Kdm5a!0.34!37.72!Kdm5a;;chr4:116480137..116480178,-!p1@Toe1!0.34!21.04!Toe1;;chr5:20387850..20387869,-!p1@Phtf2!0.34!19.58!Phtf2;;chr4:133801453..133801492,-!p1@Zfp593!0.34!15.96!Zfp593;;chr7:49761065..49761106,-!p1@ENSMUST00000174407,p1@uc009gmb.1!0.34!10.16!Zfp141;;chr3:95021612..95021650,-!p2@Gabpb2!0.34!9.43!Gabpb2;;chr8:108160826..108160879,+!p3@Ctcf!0.34!5.08!Ctcf;;chr19:5637489..5637500,+!p5@Rela!0.34!4.35!Rela;;chr8:74405860..74405905,+!p2@Zfp709!0.34!3.63!Zfp709;;chr3:30993859..30993870,+!p5@Skil!0.34!2.18!Skil;;chr16:84835585..84835596,+!p9@Gabpa!0.34!2.18!Gabpa;;chr5:38611621..38611635,-!p2@Zbtb49!0.34!2.18!Zbtb49;;chr16:55838940..55838966,-!p5@Nfkbiz!0.34!1.45!Nfkbiz;;chr1:69732354..69732402,-!p1@Ikzf2!0.34!1.45!Ikzf2;;chr19:9016355..9016540,+!p1@Mta2!0.33!158.13!Mta2;;chr3:90097085..90097175,+!p1@Gatad2b!0.33!77.61!Gatad2b;;chr12:112277544..112277610,+!p1@Rcor1!0.33!71.81!Rcor1;;chr11:74644437..74644507,+!p1@Mnt!0.33!50.78!Mnt;;chr5:25004592..25004630,-!p2@Mll3!0.33!39.17!Mll3;;chr5:145992626..145992652,+!p2@Zfp655!0.33!13.06!Zfp655;;chr5:139060892..139060911,-!p2@Zfp68!0.33!8.70!Zfp68;;chr8:124900562..124900573,+!p3@Zc3h18!0.33!4.35!Zc3h18;;chr18:84255649..84255661,-!p4@Tshz1!0.33!4.35!Tshz1;;chr1:36364572..36364580,+!p2@Arid5a!0.33!1.45!Arid5a;;chr8:108160409..108160489,+!p1@Ctcf!0.32!108.08!Ctcf;;chr6:28211907..28211943,-!p1@Zfp800!0.32!55.13!Zfp800;;chr6:92041430..92041460,+!p1@Nr2c2!0.32!42.80!Nr2c2;;chr4:119212257..119212303,+!p1@Foxj3!0.32!33.37!Foxj3;;chr2:83484721..83484734,+!p3@Zc3h15!0.32!21.76!Zc3h15;;chr9:56266431..56266488,+!p2@Hmg20a!0.32!18.86!Hmg20a;;chr4:128483347..128483411,-!p2@Zfp362!0.32!13.78!Zfp362;;chr11:16908650..16908690,-!p1@Plek!0.32!10.88!Plek;;chr7:4866835..4866858,+!p2@Zfp628!0.32!6.53!Zfp628;;chr1:64579440..64579451,+!p4@Creb1!0.32!5.80!Creb1;;chrX:103123886..103123922,-!p3@Atrx!0.32!4.35!Atrx;;chr16:3744146..3744157,+!p3@Zfp263!0.32!3.63!Zfp263;;chr16:55973899..55973913,+!p7@Rpl24,p7@Zbtb11!0.32!3.63!Zbtb11;;chr6:47785785..47785796,+!p4@Zfp398!0.32!2.18!Zfp398;;chr4:135700687..135700719,+!p2@Id3!0.32!2.18!Id3;;chr9:30838314..30838336,+!p4@Zbtb44!0.32!1.45!Zbtb44;;chr1:9690398..9690410,-!p2@Mybl1!0.32!1.45!Mybl1;;chr5:22940253..22940289,+!p1@Mll5!0.31!93.57!Mll5;;chr7:26035739..26035757,-!p1@Erf!0.31!45.70!Erf;;chr17:4995902..4995959,+!p1@Arid1b!0.31!42.80!Arid1b;;chr1:181476358..181476391,-!p1@Tfb2m!0.31!28.29!Tfb2m;;chr15:102236700..102236764,+!p1@Sp1!0.31!27.56!Sp1;;chr17:84105551..84105600,+!p1@Mta3!0.31!20.31!Mta3;;chrX:70587953..70587968,+!p1@Zfp275!0.31!19.58!Zfp275;;chr6:124959279..124959335,+!p1@Zfp384!0.31!17.41!Zfp384;;chr5:65194720..65194738,+!p2@Klf3!0.31!9.43!Klf3;;chr4:151401741..151401793,-!p1@Zbtb48!0.31!7.25!Zbtb48;;chr16:17531086..17531109,-!p3@Thap7!0.31!5.08!Thap7;;chr2:181100223..181100237,+!p4@Zgpat!0.31!4.35!Zgpat;;chr2:163028888..163028905,+!p3@Tox2!0.31!1.45!Tox2;;chr5:65203575..65203589,+!p11@Klf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| ||
Line 45: | Line 45: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13509 | |library_id=CNhs13509 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs13509 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11854 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11854 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs13509.11854-124I9.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs13509.11854-124I9.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs13509.11854-124I9.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs13509.11854-124I9.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520CD4%252b%2520T%2520Cells%252c%2520donor1.CNhs13509.11854-124I9.mm9.nobarcode.rdna.fa.gz | |||
|name=Mouse CD4+ T Cells, donor1 | |name=Mouse CD4+ T Cells, donor1 | ||
|namespace= | |namespace= | ||
Line 51: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13509,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13509,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.11779559634038,0,0,0.389294454188438,0.236880264493592,0,-0.0261260648853004,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.0449869136110175,0,0,0,0,0,0,0,0,0,0,0,0,0.077805709482015,-0.169128338135593,0,0,0,0,0,-0.0908825932490299,-0.0661618130246221,0.325497954262416,-0.984211366477826,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,0,0.0698615811467448,0.566043910719285,-0.158091042771083,-0.0839462891781396,0,-0.0780086007519514,-0.0495748129165222,0,0,0,-0.0767063466829997,0.130589414891361,0.069366851467466,0.158048669653685,0,0,0,0,0,0,0.159542974786118,0.0580841603886895,0.539531119352751,0,0,0,0,0 | |repeat_enrich_byfamily=-0.11779559634038,0,0,0.389294454188438,0.236880264493592,0,-0.0261260648853004,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.0449869136110175,0,0,0,0,0,0,0,0,0,0,0,0,0.077805709482015,-0.169128338135593,0,0,0,0,0,-0.0908825932490299,-0.0661618130246221,0.325497954262416,-0.984211366477826,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,0,0,0,0,0.0698615811467448,0.566043910719285,-0.158091042771083,-0.0839462891781396,0,-0.0780086007519514,-0.0495748129165222,0,0,0,-0.0767063466829997,0.130589414891361,0.069366851467466,0.158048669653685,0,0,0,0,0,0,0.159542974786118,0.0580841603886895,0.539531119352751,0,0,0,0,0 | ||
Line 88: | Line 97: | ||
|top_motifs=ATF4:3.487128695;BPTF:3.36331500266;ATF5_CREB3:3.28590678005;ALX4:3.05311173993;RUNX1..3:2.91470444943;NFKB1_REL_RELA:2.78605117556;CREB1:2.77940080739;ETS1,2:2.70163053602;STAT5{A,B}:2.36659152374;SPI1:2.3355424951;NFATC1..3:2.25090309364;PPARG:2.2304144442;ELF1,2,4:2.18760324898;PDX1:2.0376733325;PAX2:1.9869107098;FOX{D1,D2}:1.96123546917;FOXO1,3,4:1.94309330939;ATF6:1.91675009956;SPZ1:1.8654077809;TLX2:1.78123108251;NFE2L1:1.67387794954;DMAP1_NCOR{1,2}_SMARC:1.48909640931;FOX{I1,J2}:1.45817736378;SPIB:1.45150116828;IRF1,2:1.27436644939;JUN:1.26359838893;YY1:1.19073926489;FOXP3:1.12396759951;ZBTB16:1.1218790931;AIRE:1.05359521322;PAX8:1.03797701891;RORA:1.01414015031;ELK1,4_GABP{A,B1}:1.00890843655;FOXD3:0.990101123388;IRF7:0.850558141192;POU2F1..3:0.774756735396;TAL1_TCF{3,4,12}:0.683601735013;NKX2-2,8:0.657247018644;FOS_FOS{B,L1}_JUN{B,D}:0.622137626992;NANOG{mouse}:0.621924674323;RFX2..5_RFXANK_RFXAP:0.603042775256;CRX:0.592746800875;STAT2,4,6:0.590497104864;FOXM1:0.588896729128;MYB:0.584774197279;ALX1:0.48238068341;SREBF1,2:0.468173974004;FOX{F1,F2,J1}:0.422615677949;POU3F1..4:0.372502938799;HOX{A5,B5}:0.342555661526;TBX4,5:0.333825965484;NKX6-1,2:0.309885744361;EP300:0.308462125241;NR1H4:0.305929290778;AHR_ARNT_ARNT2:0.300906952834;PITX1..3:0.289191180867;FOXQ1:0.241308756742;HMX1:0.169614218117;SMAD1..7,9:0.159177772105;STAT1,3:0.151411052903;LEF1_TCF7_TCF7L1,2:0.148469781157;NFIX:0.13530477094;CDX1,2,4:0.107185926472;bHLH_family:0.107098373814;NRF1:0.092944892609;PAX4:0.0929093262698;NANOG:0.0837454184426;E2F1..5:0.0788838755596;POU5F1:0.063040560371;CEBPA,B_DDIT3:-0.025007890455;NR5A1,2:-0.0269964254776;FOXP1:-0.0406793375452;HOX{A4,D4}:-0.049489387458;ZEB1:-0.0853688682911;POU1F1:-0.117764161979;LMO2:-0.136040443343;TGIF1:-0.141455304294;OCT4_SOX2{dimer}:-0.141516073806;NR6A1:-0.154965960185;EGR1..3:-0.192820634769;POU6F1:-0.197419251465;TFDP1:-0.227822100612;ZNF148:-0.24359151883;HLF:-0.248531390024;NKX3-1:-0.250458069924;ATF2:-0.272603695058;HBP1_HMGB_SSRP1_UBTF:-0.280106202615;GATA6:-0.290783773701;FOXN1:-0.303439004911;ZFP161:-0.31228263135;TEF:-0.316322675168;SOX17:-0.317533056703;NFE2:-0.323192276137;MYOD1:-0.375977689815;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.385794754971;HSF1,2:-0.393470438901;CUX2:-0.402649438499;NFIL3:-0.40488906613;EVI1:-0.408384777906;NKX2-1,4:-0.410324590484;EN1,2:-0.421571543026;SOX{8,9,10}:-0.422828403744;SOX2:-0.447294848041;PBX1:-0.454116331819;TFCP2:-0.458991420459;RXRA_VDR{dimer}:-0.479632614184;AR:-0.484623043678;NFY{A,B,C}:-0.494337989937;ZNF384:-0.499026202404;SNAI1..3:-0.500034251219;NHLH1,2:-0.512900959859;MED-1{core}:-0.532263061147;MEF2{A,B,C,D}:-0.538255770599;SRF:-0.540741041289;MTE{core}:-0.568374291345;HES1:-0.600568520174;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.630714418395;MAFB:-0.641020540678;HNF4A_NR2F1,2:-0.641860428707;VSX1,2:-0.695711548881;TFAP2B:-0.701383245928;HIF1A:-0.714139226254;FOSL2:-0.720875466507;PAX6:-0.724851631155;TBP:-0.730867285269;MYFfamily:-0.756791138246;HOXA9_MEIS1:-0.75830372044;HNF1A:-0.768624236975;MZF1:-0.776365593329;NKX2-3_NKX2-5:-0.780654328717;CDC5L:-0.797786416551;PRRX1,2:-0.826038725782;PAX1,9:-0.83343112206;REST:-0.903670430869;ZBTB6:-0.920909939323;HMGA1,2:-0.932765355851;GATA4:-0.933251929928;T:-0.939343861173;BACH2:-0.945623404359;BREu{core}:-0.953307401849;MTF1:-0.956880447558;RFX1:-0.972050186308;TP53:-0.993395285318;UFEwm:-0.995929402137;ARID5B:-0.997085543998;ZNF143:-1.04196961731;RXR{A,B,G}:-1.07196536323;FOXL1:-1.07826974212;FOXA2:-1.09170186388;RREB1:-1.09217357281;LHX3,4:-1.09454050401;IKZF2:-1.13740170028;ZNF238:-1.14689193389;NKX3-2:-1.15994761727;PRDM1:-1.21838983021;SOX5:-1.22843743451;ESR1:-1.23654488266;GZF1:-1.30013210575;ESRRA:-1.30170159949;TOPORS:-1.30457162856;MAZ:-1.42513618406;GLI1..3:-1.43307795352;ZIC1..3:-1.44259661682;RBPJ:-1.47097717152;HIC1:-1.49810804755;PATZ1:-1.49887313404;EBF1:-1.55225085495;ONECUT1,2:-1.55669329948;GTF2I:-1.56217754895;TFAP2{A,C}:-1.59881886489;KLF4:-1.62397322453;NFE2L2:-1.63602174002;NR3C1:-1.64390682865;SP1:-1.67985666022;HAND1,2:-1.71771238937;IKZF1:-1.75316651287;ADNP_IRX_SIX_ZHX:-1.77988192192;DBP:-1.80769946464;PAX5:-1.94257111895;TEAD1:-1.96635117508;XCPE1{core}:-2.0413983806;GFI1:-2.17479704694;GTF2A1,2:-2.28284858605;GCM1,2:-2.28789059475;GFI1B:-2.36858807854;MYBL2:-2.50065113973;TFAP4:-2.50213194416;TLX1..3_NFIC{dimer}:-2.67071649558;ZNF423:-3.27637216637 | |top_motifs=ATF4:3.487128695;BPTF:3.36331500266;ATF5_CREB3:3.28590678005;ALX4:3.05311173993;RUNX1..3:2.91470444943;NFKB1_REL_RELA:2.78605117556;CREB1:2.77940080739;ETS1,2:2.70163053602;STAT5{A,B}:2.36659152374;SPI1:2.3355424951;NFATC1..3:2.25090309364;PPARG:2.2304144442;ELF1,2,4:2.18760324898;PDX1:2.0376733325;PAX2:1.9869107098;FOX{D1,D2}:1.96123546917;FOXO1,3,4:1.94309330939;ATF6:1.91675009956;SPZ1:1.8654077809;TLX2:1.78123108251;NFE2L1:1.67387794954;DMAP1_NCOR{1,2}_SMARC:1.48909640931;FOX{I1,J2}:1.45817736378;SPIB:1.45150116828;IRF1,2:1.27436644939;JUN:1.26359838893;YY1:1.19073926489;FOXP3:1.12396759951;ZBTB16:1.1218790931;AIRE:1.05359521322;PAX8:1.03797701891;RORA:1.01414015031;ELK1,4_GABP{A,B1}:1.00890843655;FOXD3:0.990101123388;IRF7:0.850558141192;POU2F1..3:0.774756735396;TAL1_TCF{3,4,12}:0.683601735013;NKX2-2,8:0.657247018644;FOS_FOS{B,L1}_JUN{B,D}:0.622137626992;NANOG{mouse}:0.621924674323;RFX2..5_RFXANK_RFXAP:0.603042775256;CRX:0.592746800875;STAT2,4,6:0.590497104864;FOXM1:0.588896729128;MYB:0.584774197279;ALX1:0.48238068341;SREBF1,2:0.468173974004;FOX{F1,F2,J1}:0.422615677949;POU3F1..4:0.372502938799;HOX{A5,B5}:0.342555661526;TBX4,5:0.333825965484;NKX6-1,2:0.309885744361;EP300:0.308462125241;NR1H4:0.305929290778;AHR_ARNT_ARNT2:0.300906952834;PITX1..3:0.289191180867;FOXQ1:0.241308756742;HMX1:0.169614218117;SMAD1..7,9:0.159177772105;STAT1,3:0.151411052903;LEF1_TCF7_TCF7L1,2:0.148469781157;NFIX:0.13530477094;CDX1,2,4:0.107185926472;bHLH_family:0.107098373814;NRF1:0.092944892609;PAX4:0.0929093262698;NANOG:0.0837454184426;E2F1..5:0.0788838755596;POU5F1:0.063040560371;CEBPA,B_DDIT3:-0.025007890455;NR5A1,2:-0.0269964254776;FOXP1:-0.0406793375452;HOX{A4,D4}:-0.049489387458;ZEB1:-0.0853688682911;POU1F1:-0.117764161979;LMO2:-0.136040443343;TGIF1:-0.141455304294;OCT4_SOX2{dimer}:-0.141516073806;NR6A1:-0.154965960185;EGR1..3:-0.192820634769;POU6F1:-0.197419251465;TFDP1:-0.227822100612;ZNF148:-0.24359151883;HLF:-0.248531390024;NKX3-1:-0.250458069924;ATF2:-0.272603695058;HBP1_HMGB_SSRP1_UBTF:-0.280106202615;GATA6:-0.290783773701;FOXN1:-0.303439004911;ZFP161:-0.31228263135;TEF:-0.316322675168;SOX17:-0.317533056703;NFE2:-0.323192276137;MYOD1:-0.375977689815;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.385794754971;HSF1,2:-0.393470438901;CUX2:-0.402649438499;NFIL3:-0.40488906613;EVI1:-0.408384777906;NKX2-1,4:-0.410324590484;EN1,2:-0.421571543026;SOX{8,9,10}:-0.422828403744;SOX2:-0.447294848041;PBX1:-0.454116331819;TFCP2:-0.458991420459;RXRA_VDR{dimer}:-0.479632614184;AR:-0.484623043678;NFY{A,B,C}:-0.494337989937;ZNF384:-0.499026202404;SNAI1..3:-0.500034251219;NHLH1,2:-0.512900959859;MED-1{core}:-0.532263061147;MEF2{A,B,C,D}:-0.538255770599;SRF:-0.540741041289;MTE{core}:-0.568374291345;HES1:-0.600568520174;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.630714418395;MAFB:-0.641020540678;HNF4A_NR2F1,2:-0.641860428707;VSX1,2:-0.695711548881;TFAP2B:-0.701383245928;HIF1A:-0.714139226254;FOSL2:-0.720875466507;PAX6:-0.724851631155;TBP:-0.730867285269;MYFfamily:-0.756791138246;HOXA9_MEIS1:-0.75830372044;HNF1A:-0.768624236975;MZF1:-0.776365593329;NKX2-3_NKX2-5:-0.780654328717;CDC5L:-0.797786416551;PRRX1,2:-0.826038725782;PAX1,9:-0.83343112206;REST:-0.903670430869;ZBTB6:-0.920909939323;HMGA1,2:-0.932765355851;GATA4:-0.933251929928;T:-0.939343861173;BACH2:-0.945623404359;BREu{core}:-0.953307401849;MTF1:-0.956880447558;RFX1:-0.972050186308;TP53:-0.993395285318;UFEwm:-0.995929402137;ARID5B:-0.997085543998;ZNF143:-1.04196961731;RXR{A,B,G}:-1.07196536323;FOXL1:-1.07826974212;FOXA2:-1.09170186388;RREB1:-1.09217357281;LHX3,4:-1.09454050401;IKZF2:-1.13740170028;ZNF238:-1.14689193389;NKX3-2:-1.15994761727;PRDM1:-1.21838983021;SOX5:-1.22843743451;ESR1:-1.23654488266;GZF1:-1.30013210575;ESRRA:-1.30170159949;TOPORS:-1.30457162856;MAZ:-1.42513618406;GLI1..3:-1.43307795352;ZIC1..3:-1.44259661682;RBPJ:-1.47097717152;HIC1:-1.49810804755;PATZ1:-1.49887313404;EBF1:-1.55225085495;ONECUT1,2:-1.55669329948;GTF2I:-1.56217754895;TFAP2{A,C}:-1.59881886489;KLF4:-1.62397322453;NFE2L2:-1.63602174002;NR3C1:-1.64390682865;SP1:-1.67985666022;HAND1,2:-1.71771238937;IKZF1:-1.75316651287;ADNP_IRX_SIX_ZHX:-1.77988192192;DBP:-1.80769946464;PAX5:-1.94257111895;TEAD1:-1.96635117508;XCPE1{core}:-2.0413983806;GFI1:-2.17479704694;GTF2A1,2:-2.28284858605;GCM1,2:-2.28789059475;GFI1B:-2.36858807854;MYBL2:-2.50065113973;TFAP4:-2.50213194416;TLX1..3_NFIC{dimer}:-2.67071649558;ZNF423:-3.27637216637 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11854-124I9;search_select_hide=table117:11854-124I9 | |||
}} | }} |
Latest revision as of 18:24, 4 June 2020
Name: | Mouse CD4+ T Cells, donor1 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs13509 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs13509
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0 |
1001 | -0.0749 |
1002 | -0.116 |
1003 | -0.123 |
1004 | 0 |
1005 | 0.116 |
1006 | -0.148 |
1007 | 0.032 |
1008 | 0 |
1009 | -0.19 |
101 | 0.139 |
1010 | 0 |
1011 | 0.129 |
1012 | 0.186 |
1013 | -0.188 |
1014 | -0.0874 |
1015 | -0.0376 |
1016 | -0.594 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0.729 |
1020 | 0 |
1021 | 0 |
1022 | -0.315 |
1023 | 0 |
1024 | -0.0899 |
1025 | -0.0611 |
1026 | 0 |
1027 | -0.048 |
1028 | 0 |
1029 | -0.176 |
103 | -0.0887 |
1030 | 0 |
1031 | -1.148 |
1032 | -0.655 |
1033 | 0.427 |
1034 | 0 |
1035 | 0 |
1036 | 0.433 |
1037 | 0 |
1038 | 0.0211 |
1039 | -0.223 |
104 | 0 |
1040 | -0.216 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13509
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13509
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.467 |
10 | 10 | 0.0592 |
100 | 100 | 0.526 |
101 | 101 | 0.995 |
102 | 102 | 0.475 |
103 | 103 | 0.486 |
104 | 104 | 0.998 |
105 | 105 | 0.569 |
106 | 106 | 0.559 |
107 | 107 | 0.487 |
108 | 108 | 0.754 |
109 | 109 | 0.504 |
11 | 11 | 0.415 |
110 | 110 | 0.292 |
111 | 111 | 0.328 |
112 | 112 | 0.177 |
113 | 113 | 0.444 |
114 | 114 | 0.3 |
115 | 115 | 0.608 |
116 | 116 | 0.57 |
117 | 117 | 2.97036e-4 |
118 | 118 | 0.211 |
119 | 119 | 0.656 |
12 | 12 | 0.239 |
120 | 120 | 0.0611 |
121 | 121 | 0.337 |
122 | 122 | 0.97 |
123 | 123 | 0.66 |
124 | 124 | 0.465 |
125 | 125 | 0.561 |
126 | 126 | 0.456 |
127 | 127 | 0.784 |
128 | 128 | 0.246 |
129 | 129 | 0.332 |
13 | 13 | 0.143 |
130 | 130 | 0.71 |
131 | 131 | 0.267 |
132 | 132 | 0.828 |
133 | 133 | 0.55 |
134 | 134 | 0.592 |
135 | 135 | 0.878 |
136 | 136 | 0.546 |
137 | 137 | 0.336 |
138 | 138 | 0.267 |
139 | 139 | 0.321 |
14 | 14 | 0.603 |
140 | 140 | 0.528 |
141 | 141 | 0.324 |
142 | 142 | 0.263 |
143 | 143 | 2.52455e-4 |
144 | 144 | 0.507 |
145 | 145 | 0.199 |
146 | 146 | 0.784 |
147 | 147 | 0.469 |
148 | 148 | 0.178 |
149 | 149 | 0.176 |
15 | 15 | 0.185 |
150 | 150 | 0.881 |
151 | 151 | 0.288 |
152 | 152 | 0.379 |
153 | 153 | 0.47 |
154 | 154 | 0.166 |
155 | 155 | 0.0504 |
156 | 156 | 0.0661 |
157 | 157 | 0.833 |
158 | 158 | 0.0143 |
159 | 159 | 0.805 |
160 | 160 | 0.354 |
161 | 161 | 0.185 |
162 | 162 | 0.277 |
163 | 163 | 0.32 |
164 | 164 | 0.0919 |
165 | 165 | 0.819 |
166 | 166 | 0.487 |
167 | 167 | 0.0943 |
168 | 168 | 0.337 |
169 | 169 | 0.625 |
17 | 17 | 0.855 |
18 | 18 | 0.224 |
19 | 19 | 0.0776 |
2 | 2 | 0.018 |
20 | 20 | 0.0211 |
21 | 21 | 0.0869 |
22 | 22 | 0.615 |
23 | 23 | 0.995 |
24 | 24 | 0.552 |
25 | 25 | 0.198 |
26 | 26 | 0.363 |
27 | 27 | 0.658 |
28 | 28 | 0.384 |
29 | 29 | 0.0651 |
3 | 3 | 0.522 |
30 | 30 | 0.119 |
31 | 31 | 0.597 |
32 | 32 | 0.146 |
33 | 33 | 0.0987 |
34 | 34 | 0.353 |
35 | 35 | 0.0339 |
36 | 36 | 0.0899 |
37 | 37 | 0.232 |
38 | 38 | 0.618 |
39 | 39 | 0.365 |
4 | 4 | 0.7 |
40 | 40 | 0.504 |
41 | 41 | 0.149 |
42 | 42 | 0.281 |
43 | 43 | 0.713 |
44 | 44 | 0.683 |
45 | 45 | 0.27 |
46 | 46 | 0.506 |
47 | 47 | 0.862 |
48 | 48 | 0.431 |
49 | 49 | 0.207 |
5 | 5 | 0.119 |
50 | 50 | 0.469 |
51 | 51 | 0.69 |
52 | 52 | 0.184 |
53 | 53 | 0.607 |
54 | 54 | 0.639 |
55 | 55 | 0.896 |
56 | 56 | 0.993 |
57 | 57 | 0.688 |
58 | 58 | 0.321 |
59 | 59 | 0.565 |
6 | 6 | 0.661 |
60 | 60 | 0.854 |
61 | 61 | 0.209 |
62 | 62 | 0.0923 |
63 | 63 | 0.995 |
64 | 64 | 0.993 |
65 | 65 | 0.407 |
66 | 66 | 0.451 |
67 | 67 | 0.698 |
68 | 68 | 0.439 |
69 | 69 | 0.737 |
7 | 7 | 0.555 |
70 | 70 | 0.0234 |
71 | 71 | 0.192 |
72 | 72 | 0.954 |
73 | 73 | 0.322 |
74 | 74 | 0.713 |
75 | 75 | 0.00795 |
76 | 76 | 0.0271 |
77 | 77 | 0.0257 |
78 | 78 | 0.0404 |
79 | 79 | 0.954 |
8 | 8 | 0.71 |
80 | 80 | 0.163 |
81 | 81 | 0.992 |
82 | 82 | 0.495 |
83 | 83 | 0.0946 |
84 | 84 | 0.925 |
85 | 85 | 0.847 |
86 | 86 | 0.158 |
87 | 87 | 0.542 |
88 | 88 | 0.37 |
89 | 89 | 0.664 |
9 | 9 | 0.923 |
90 | 90 | 0.102 |
91 | 91 | 0.718 |
92 | 92 | 0.643 |
93 | 93 | 0.111 |
94 | 94 | 0.282 |
95 | 95 | 0.367 |
96 | 96 | 0.41 |
97 | 97 | 0.459 |
98 | 98 | 0.467 |
99 | 99 | 0.0285 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13509
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000031 CD4-positive T cell sample
FF:0000103 mouse sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000791 (mature alpha-beta T cell)
0000084 (T cell)
0000789 (alpha-beta T cell)
0002419 (mature T cell)
0000624 (CD4-positive, alpha-beta T cell)
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000031 (CD4-positive T cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
CL:0000790 (immature alpha-beta T cell)