FFCP PHASE1:Mm9::chr5:24104751..24104773,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=66993 | |EntrezGene=66993 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=100 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000145565_5end | |association_with_transcript=0bp_to_ENSMUST00000145565_5end | ||
|cluster_id=chr5:24104751..24104773,- | |||
|description=CAGE_peak_5_at_Smarcd3_5end | |description=CAGE_peak_5_at_Smarcd3_5end | ||
|id=chr5:24104751..24104773,- | |id=chr5:24104751..24104773,- | ||
|ontology_enrichment_celltype=CL:0000117!3.88e-15!23;CL:0000337!3.88e-15!23;CL:0000540!1.78e-08!33;CL:0000047!1.78e-08!33;CL:0000031!1.78e-08!33;CL:0000404!1.78e-08!33;CL:0002609!4.57e-08!6 | |ontology_enrichment_celltype=CL:0000117!3.88e-15!23;CL:0000337!3.88e-15!23;CL:0000540!1.78e-08!33;CL:0000047!1.78e-08!33;CL:0000031!1.78e-08!33;CL:0000404!1.78e-08!33;CL:0002609!4.57e-08!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.12e-25,23;CL:0000337,6.12e-25,23;CL:0000540,5.73e-16,33;CL:0000047,5.73e-16,33;CL:0000031,5.73e-16,33;CL:0000404,5.73e-16,33;CL:0002609,8.51e-14,6;CL:0000393,8.23e-13,39;CL:0000211,8.23e-13,39;CL:0002319,3.33e-11,43;CL:0000221,7.55e-11,44;CL:0000133,7.55e-11,44;CL:0002613,8.67e-08,3;CL:0000120,1.81e-07,3;CL:0002608,2.09e-07,3;CL:0002612,4.08e-07,3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.72e-13!52;UBERON:0005068!1.72e-13!52;UBERON:0006241!1.72e-13!52;UBERON:0007135!1.72e-13!52;UBERON:0001017!2.49e-11!73;UBERON:0005743!2.49e-11!73;UBERON:0000073!1.06e-10!75;UBERON:0001016!1.06e-10!75;UBERON:0002020!6.77e-10!34;UBERON:0000955!1.67e-09!50;UBERON:0006238!1.67e-09!50;UBERON:0002346!1.99e-09!71;UBERON:0003075!1.99e-09!71;UBERON:0007284!1.99e-09!71;UBERON:0003080!3.26e-09!40;UBERON:0002616!5.57e-09!49;UBERON:0002780!6.97e-09!39;UBERON:0001890!6.97e-09!39;UBERON:0006240!6.97e-09!39;UBERON:0003056!1.09e-08!49;UBERON:0000033!5.60e-08!63 | |ontology_enrichment_uberon=UBERON:0001049!1.72e-13!52;UBERON:0005068!1.72e-13!52;UBERON:0006241!1.72e-13!52;UBERON:0007135!1.72e-13!52;UBERON:0001017!2.49e-11!73;UBERON:0005743!2.49e-11!73;UBERON:0000073!1.06e-10!75;UBERON:0001016!1.06e-10!75;UBERON:0002020!6.77e-10!34;UBERON:0000955!1.67e-09!50;UBERON:0006238!1.67e-09!50;UBERON:0002346!1.99e-09!71;UBERON:0003075!1.99e-09!71;UBERON:0007284!1.99e-09!71;UBERON:0003080!3.26e-09!40;UBERON:0002616!5.57e-09!49;UBERON:0002780!6.97e-09!39;UBERON:0001890!6.97e-09!39;UBERON:0006240!6.97e-09!39;UBERON:0003056!1.09e-08!49;UBERON:0000033!5.60e-08!63 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.08e-13,34;UBERON:0001948,1.03e-10,5;UBERON:0002315,1.03e-10,5;UBERON:0002240,7.54e-09,6;UBERON:0005174,7.54e-09,6;UBERON:0001137,7.54e-09,6;UBERON:0000369,8.51e-08,5;UBERON:0002435,8.51e-08,5;UBERON:0000204,8.51e-08,5;UBERON:0010082,8.51e-08,5;UBERON:0003528,2.01e-07,29;UBERON:0002791,2.01e-07,29;UBERON:0001893,2.01e-07,29;UBERON:0001049,2.34e-07,52;UBERON:0005068,2.34e-07,52;UBERON:0006241,2.34e-07,52;UBERON:0007135,2.34e-07,52;UBERON:0002257,4.08e-07,3;UBERON:0000073,6.09e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,9.1042407386819,11.6378015439847,5.70448263155561,0,0,0,0,0,0.299600110518405,0,25.9224030771194,34.1565023979177,30.0764694732476,4.28476476605705,5.07997644188711,9.18680994112155,7.47594673942244,7.35375029288017,0,0,0.153606533256243,13.7161739239402,15.3699241252048,11.4600941522487,0,0,0.15279824777681,5.89257170947335,4.6982654663704,5.59198337475902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0.585561594023094,0,0,0,0,0,0.149790639404823,0.457500602818626,10.3036568732549,0,0,0.41557608911912,0.324482526135515,0,0,0,0,0,0,0,0.150704817835715,0.340182495756639,0.12811372028485,0.0937017245597288,0,0,0.378212160335639,0.351902248327898,0.219195732427575,0,0.348252166522167,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,8.54108282748061,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0,0.325773918707152,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0.540183282093931,0.129358683782755,0.428674070063185,0.354680467284547,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0.206386867963223,0,0,0,0,0,0,0,0,0.316335993581135,0,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0.194451188344048,0.258319646955462,0,0,0,0.314578033277133,0.483168241652012,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0.906284817968409,0,0.103787347584177,0,1.02440163452481,1.21553358534147,0.628839487883947,1.47074806760011,2.00022055021454,1.23621034343337,1.60459604795908,1.51618327058278,1.52087579934144,1.88626341386076,1.49826411951812,1.40855335290712,1.7230640686684,2.38146845641537,1.62238056322798,1.15745532278223,1.64834360321323,1.47198920134397,1.71434626192708,0.70990322463735,1.90748951957857,1.74415699958794,1.59985946706062,1.18460451048347,0.914639864363863,1.57841826862706,1.08643291076689,0,2.13543032623513,1.37906275325789,0.409231043169689,0.77468420592983,0.385813221962283,3.74715866906919,0.467863216890817,0.429742108096597,0.57386499620653,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,9.1042407386819,11.6378015439847,5.70448263155561,0,0,0,0,0,0.299600110518405,0,25.9224030771194,34.1565023979177,30.0764694732476,4.28476476605705,5.07997644188711,9.18680994112155,7.47594673942244,7.35375029288017,0,0,0.153606533256243,13.7161739239402,15.3699241252048,11.4600941522487,0,0,0.15279824777681,5.89257170947335,4.6982654663704,5.59198337475902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0,0,0,0.585561594023094,0,0,0,0,0,0.149790639404823,0.457500602818626,10.3036568732549,0,0,0.41557608911912,0.324482526135515,0,0,0,0,0,0,0,0.150704817835715,0.340182495756639,0.12811372028485,0.0937017245597288,0,0,0.378212160335639,0.351902248327898,0.219195732427575,0,0.348252166522167,0,0.199034266818493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,8.54108282748061,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0,0.189667900953082,0,0,0,0,0.140271639780637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321101179975584,0,0,0,0,0,0,0,0,0,0,0,0,0.642642632843614,0,0,0.325773918707152,0,0,0,0,0,0,0,0,0,0,0.316036757935816,0,0,0,0.540183282093931,0.129358683782755,0.428674070063185,0.354680467284547,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0.206386867963223,0,0,0,0,0,0,0,0,0.316335993581135,0,0,0.209088296014469,0,0,0,0,0,0,0,0,0,0.194451188344048,0.258319646955462,0,0,0,0.314578033277133,0.483168241652012,0,0,0,0,0.129920822977795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572895513439397,0,0,0,0,0,0.906284817968409,0,0.103787347584177,0,1.02440163452481,1.21553358534147,0.628839487883947,1.47074806760011,2.00022055021454,1.23621034343337,1.60459604795908,1.51618327058278,1.52087579934144,1.88626341386076,1.49826411951812,1.40855335290712,1.7230640686684,2.38146845641537,1.62238056322798,1.15745532278223,1.64834360321323,1.47198920134397,1.71434626192708,0.70990322463735,1.90748951957857,1.74415699958794,1.59985946706062,1.18460451048347,0.914639864363863,1.57841826862706,1.08643291076689,0,2.13543032623513,1.37906275325789,0.409231043169689,0.77468420592983,0.385813221962283,3.74715866906919,0.467863216890817,0.429742108096597,0.57386499620653,0,0 | ||
|short_description=p5@Smarcd3 | |short_description=p5@Smarcd3 | ||
}} | }} |
Latest revision as of 20:44, 25 September 2015
Short description: | p5@Smarcd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Smarcd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:100 |
Association with transcript: | 0bp_to_ENSMUST00000145565_5end |
EntrezGene: | Smarcd3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.12e-25 | 23 |
neuroblast (sensu Vertebrata) | 6.12e-25 | 23 |
neuron | 5.73e-16 | 33 |
neuronal stem cell | 5.73e-16 | 33 |
neuroblast | 5.73e-16 | 33 |
electrically signaling cell | 5.73e-16 | 33 |
neuron of cerebral cortex | 8.51e-14 | 6 |
electrically responsive cell | 8.23e-13 | 39 |
electrically active cell | 8.23e-13 | 39 |
neural cell | 3.33e-11 | 43 |
ectodermal cell | 7.55e-11 | 44 |
neurectodermal cell | 7.55e-11 | 44 |
striatum neuron | 8.67e-08 | 3 |
granule cell | 1.81e-07 | 3 |
hippocampal neuron | 2.09e-07 | 3 |
neuron of the ventral spinal cord | 4.08e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
gray matter | 2.08e-13 | 34 |
regional part of spinal cord | 1.03e-10 | 5 |
gray matter of spinal cord | 1.03e-10 | 5 |
spinal cord | 7.54e-09 | 6 |
dorsal region element | 7.54e-09 | 6 |
dorsum | 7.54e-09 | 6 |
corpus striatum | 8.51e-08 | 5 |
striatum | 8.51e-08 | 5 |
ventral part of telencephalon | 8.51e-08 | 5 |
future corpus striatum | 8.51e-08 | 5 |
brain grey matter | 2.01e-07 | 29 |
regional part of telencephalon | 2.01e-07 | 29 |
telencephalon | 2.01e-07 | 29 |
neural tube | 2.34e-07 | 52 |
neural rod | 2.34e-07 | 52 |
future spinal cord | 2.34e-07 | 52 |
neural keel | 2.34e-07 | 52 |
ventral horn of spinal cord | 4.08e-07 | 3 |
regional part of nervous system | 6.09e-07 | 54 |