FFCP PHASE1:Hg19::chr11:16378028..16378044,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr11:16378028..16378044,- | |||
|coexpression_cluster_id=C90 | |||
|description=CAGE_peak_at_chr11:16378028..16378044,- | |description=CAGE_peak_at_chr11:16378028..16378044,- | ||
|id=chr11:16378028..16378044,- | |id=chr11:16378028..16378044,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000047;1.84e-24;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,8.85e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0006241;7.29e-17;3!UBERON:0003057;7.29e-17;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;5.35e-24;2!DOID:171;2.34e-19;10!DOID:3095;6.22e-09;22!DOID:2994;6.22e-09;22!DOID:3193;4.42e-07;2!DOID:962;4.42e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.97e-24,2;DOID:171,2.69e-19,10;DOID:3095,6.62e-09,22;DOID:2994,6.62e-09,22;DOID:3193,5.28e-07,2;DOID:962,5.28e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!2.65e-47!57;UBERON:0005068!2.65e-47!57;UBERON:0006241!2.65e-47!57;UBERON:0007135!2.65e-47!57;UBERON:0001017!6.80e-42!82;UBERON:0005743!3.33e-41!86;UBERON:0000073!7.56e-38!94;UBERON:0001016!7.56e-38!94;UBERON:0002616!8.21e-38!59;UBERON:0002346!1.36e-37!90;UBERON:0000955!4.52e-34!69;UBERON:0006238!4.52e-34!69;UBERON:0002780!1.51e-32!41;UBERON:0001890!1.51e-32!41;UBERON:0006240!1.51e-32!41;UBERON:0001893!2.66e-32!34;UBERON:0002020!2.77e-32!34;UBERON:0003528!2.77e-32!34;UBERON:0003075!6.48e-32!86;UBERON:0007284!6.48e-32!86;UBERON:0003080!1.44e-31!42;UBERON:0007023!2.30e-31!115;UBERON:0002791!1.03e-30!33;UBERON:0001869!5.67e-29!32;UBERON:0002619!1.13e-24!22;UBERON:0001950!2.07e-24!20;UBERON:0000956!9.83e-24!25;UBERON:0000203!9.83e-24!25;UBERON:0000924!3.72e-23!173;UBERON:0006601!3.72e-23!173;UBERON:0003056!1.41e-20!61;UBERON:0004121!2.03e-19!169;UBERON:0000033!8.56e-17!123;UBERON:0003076!9.13e-17!15;UBERON:0003057!9.13e-17!15;UBERON:0000153!1.87e-15!129;UBERON:0007811!1.87e-15!129;UBERON:0001871!2.59e-14!7;UBERON:0004733!6.86e-12!12;UBERON:0002028!6.86e-12!12;UBERON:0007277!6.86e-12!12;UBERON:0002298!8.96e-12!8;UBERON:0004732!8.19e-11!13;UBERON:0000025!5.42e-10!194;UBERON:0002308!6.16e-10!9;UBERON:0000125!6.16e-10!9;UBERON:0002420!8.84e-10!9;UBERON:0007245!8.84e-10!9;UBERON:0010009!8.84e-10!9;UBERON:0010011!8.84e-10!9;UBERON:0000454!8.84e-10!9;UBERON:0004111!4.97e-08!241;UBERON:0000200!2.00e-07!6;UBERON:0002680!2.31e-07!9;UBERON:0001895!2.31e-07!9;UBERON:0010092!2.31e-07!9;UBERON:0006331!6.70e-07!3;UBERON:0002240!6.83e-07!3;UBERON:0000988!7.24e-07!3;UBERON:0000349!9.71e-07!5;UBERON:0009663!9.77e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;9.85e-28;4!UBERON:0000923;9.85e-28;4!UBERON:0010316;9.85e-28;4!UBERON:0005291;9.85e-28;4!UBERON:0002050;2.50e-22;5!UBERON:0005423;2.50e-22;5!UBERON:0002240;7.29e-17;3!UBERON:0005174;7.29e-17;3!UBERON:0001137;7.29e-17;3!UBERON:0002336;6.82e-13;1!UBERON:0011215;6.82e-13;1!UBERON:0001018;6.82e-13;1!UBERON:0002473;6.82e-13;1!UBERON:0005340;6.82e-13;1!UBERON:0003544;6.82e-13;1!UBERON:0005970;6.82e-13;1!UBERON:0002316;6.82e-13;1!UBERON:0001020;6.82e-13;1!UBERON:0002437;6.82e-13;1!UBERON:0000922;3.01e-07;49!UBERON:0003714;4.42e-07;2!UBERON:0005162;4.42e-07;2!UBERON:0000122;4.42e-07;2!UBERON:0001016;8.94e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002240,6.22e-17,3;UBERON:0005174,6.22e-17,3;UBERON:0001137,6.22e-17,3;UBERON:0004121,3.02e-13,171;UBERON:0000924,3.02e-13,171;UBERON:0006601,3.02e-13,171;UBERON:0003076,6.61e-13,15;UBERON:0003057,6.61e-13,15;UBERON:0002336,6.82e-13,1;UBERON:0011215,6.82e-13,1;UBERON:0001018,6.82e-13,1;UBERON:0002473,6.82e-13,1;UBERON:0005340,6.82e-13,1;UBERON:0003544,6.82e-13,1;UBERON:0005970,6.82e-13,1;UBERON:0002316,6.82e-13,1;UBERON:0001020,6.82e-13,1;UBERON:0002437,6.82e-13,1;UBERON:0002346,2.87e-12,86;UBERON:0001016,2.20e-11,89;UBERON:0001017,2.55e-10,81;UBERON:0001049,2.01e-09,56;UBERON:0005068,2.01e-09,56;UBERON:0006241,2.01e-09,56;UBERON:0007135,2.01e-09,56;UBERON:0010371,6.43e-08,104;UBERON:0005162,4.42e-07,2;UBERON:0000122,4.42e-07,2;UBERON:0003714,5.28e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,0.381988425558278,0,0,0.205654985406647,0.300343057843917,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.04913549066956,1.30139853857622,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0.601892199455438,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.330037999682352,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0.969332746095218,0.74214478529481,0,0,0,0,0,0,0,0,1.74962768029953,0,0,0.482385754501632,0,2.21158519862449,0.295547618953547,0.438770794307945,0,0,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,1.34802265961354,0.802577647298789,0.702793337176017,0,0,0,0,1.20990716048664,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.290967049465258,0,0.225980740780532,0,0,0.443175571691151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.273810757783986,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,0,0.0824158583811665,0,0.196854963029498,0,0,0.681017030557878,0,0,0,0,0,0.607495566580247,0,0,0.314727528809989,0,0.35857467866569,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.775697738169303,0.79339561045614,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.500763722825999,0.573409195690071,0.554645257684261,1.8628920882415,0,0,1.97143852804142,1.42732666772484,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0.567515953566836,0,0,0.622077260032973,0,0,0,0,3.22491806912648,23.3832412111851,0.867550349813015,1.11728983594649,0,0,0,0,0,0.963438376446893,0,0.638535436228605,0.205116364240755,0.504143392443436,0.276629009856872,0.161475645631851,0,0,0,0,0,0.381382095467167,0,0.596748666348824,0.150420656698515,0,0.781514011233092,0,0,0,0.675375846183947,0,0.206686796501184,0.634158101939068,1.09394961803644,0,0,5.100266086429,0,0,0.336283722218824,0,0,0.0887023701626388,0,0,0.679697329768317,0.263091094251396,0,0.111231401892069,0.313972371402056,0,0,0,0,0,0.428859265059938,0,0,0.695433089210318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3196288626764,0.485710993059139,0,0,0,0,0,0,0,0.218559560503957,0,0,0,3.72986087518396,0.297046400327086,2.5359343655004,0,0,0.0644578879735772,0,0,0,0,0,0,0.716697915757256,0,0.475940431336403,0.872701380680755,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.724030971033267,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0.665320713092027,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,0.381988425558278,0,0,0.205654985406647,0.300343057843917,0.285826432630578,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.04913549066956,1.30139853857622,0.773288812777695,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0.601892199455438,0,0,0,0.184369168541703,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.330037999682352,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0.969332746095218,0.74214478529481,0,0,0,0,0,0,0,0,1.74962768029953,0,0,0.482385754501632,0,2.21158519862449,0.295547618953547,0.438770794307945,0,0,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0,0,0,0.176915129006678,0,0,0,0,1.34802265961354,0.802577647298789,0.702793337176017,0,0,0,0,1.20990716048664,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.290967049465258,0,0.225980740780532,0,0,0.443175571691151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0.273810757783986,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,0,0.0824158583811665,0,0.196854963029498,0,0,0.681017030557878,0,0,0,0,0,0.607495566580247,0,0,0.314727528809989,0,0.35857467866569,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.775697738169303,0.79339561045614,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0.244052529803926,0.500763722825999,0.573409195690071,0.554645257684261,1.8628920882415,0,0,1.97143852804142,1.42732666772484,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0,0.567515953566836,0,0,0.622077260032973,0,0,0,0,3.22491806912648,23.3832412111851,0.867550349813015,1.11728983594649,0,0,0,0,0,0.963438376446893,0,0.638535436228605,0.205116364240755,0.504143392443436,0.276629009856872,0.161475645631851,0,0,0,0,0,0.381382095467167,0,0.596748666348824,0.150420656698515,0,0.781514011233092,0,0,0,0.675375846183947,0,0.206686796501184,0.634158101939068,1.09394961803644,0,0,5.100266086429,0,0,0.336283722218824,0,0,0.0887023701626388,0,0,0.679697329768317,0.263091094251396,0,0.111231401892069,0.313972371402056,0,0,0,0,0,0.428859265059938,0,0,0.695433089210318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3196288626764,0.485710993059139,0,0,0,0,0,0,0,0.218559560503957,0,0,0,3.72986087518396,0.297046400327086,2.5359343655004,0,0,0.0644578879735772,0,0,0,0,0,0,0.716697915757256,0,0.475940431336403,0.872701380680755,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.724030971033267,0,0,0,0,0,0,0,0,0,0.0673520530145875,0.0717222053926763,0.665320713092027,0,0,0,0,0,0,0.406896178315738,0,0.201273793591026,0 | ||
|short_description=p@chr11:16378028..16378044,- | |short_description=p@chr11:16378028..16378044,- | ||
}} | }} |
Latest revision as of 20:22, 23 July 2015
Short description: | p@chr11:16378028..16378044, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr11:16378028..16378044, - |
Coexpression cluster: | C90_neuroectodermal_peripheral_neuroepithelioma_neuroblastoma_carcinoid_parietal_putamen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 8.85e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
spinal cord | 6.22e-17 | 3 |
dorsal region element | 6.22e-17 | 3 |
dorsum | 6.22e-17 | 3 |
ectoderm-derived structure | 3.02e-13 | 171 |
ectoderm | 3.02e-13 | 171 |
presumptive ectoderm | 3.02e-13 | 171 |
posterior neural tube | 6.61e-13 | 15 |
chordal neural plate | 6.61e-13 | 15 |
corpus callosum | 6.82e-13 | 1 |
central nervous system cell part cluster | 6.82e-13 | 1 |
axon tract | 6.82e-13 | 1 |
intercerebral commissure | 6.82e-13 | 1 |
dorsal telencephalic commissure | 6.82e-13 | 1 |
brain white matter | 6.82e-13 | 1 |
brain commissure | 6.82e-13 | 1 |
white matter | 6.82e-13 | 1 |
nervous system commissure | 6.82e-13 | 1 |
cerebral hemisphere white matter | 6.82e-13 | 1 |
neurectoderm | 2.87e-12 | 86 |
nervous system | 2.20e-11 | 89 |
central nervous system | 2.55e-10 | 81 |
neural tube | 2.01e-09 | 56 |
neural rod | 2.01e-09 | 56 |
future spinal cord | 2.01e-09 | 56 |
neural keel | 2.01e-09 | 56 |
ecto-epithelium | 6.43e-08 | 104 |
multi cell component structure | 4.42e-07 | 2 |
neuron projection bundle | 4.42e-07 | 2 |
neural tissue | 5.28e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.97e-24 | 2 |
neuroectodermal tumor | 2.69e-19 | 10 |
germ cell and embryonal cancer | 6.62e-09 | 22 |
germ cell cancer | 6.62e-09 | 22 |
peripheral nerve sheath neoplasm | 5.28e-07 | 2 |
neurofibroma | 5.28e-07 | 2 |