FFCP PHASE1:Hg19::chr10:50817847..50817867,+: Difference between revisions
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|id=chr10:50817847..50817867,+
|short_description=p4@SLC18A3
|description=CAGE_peak_4_at_SLC18A3_5end
|association_with_transcript=-479bp_to_ENST00000374115,NM_0030...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6572 | |EntrezGene=6572 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10936 | |HGNC=10936 | ||
|TSSclassifier=strong | |||
|UniProt=Q16572 | |UniProt=Q16572 | ||
|association_with_transcript=-479bp_to_ENST00000374115,NM_003055,uc001jhw.2_5end | |||
|cluster_id=chr10:50817847..50817867,+ | |||
|coexpression_cluster_id=C1313 | |||
|description=CAGE_peak_4_at_SLC18A3_5end | |||
|id=chr10:50817847..50817867,+ | |||
|ontology_enrichment_celltype=CL:0002537!2.21e-10!5;CL:0000349!2.32e-08!3;CL:0002577!2.32e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002577;6.51e-34;3!CL:0000349;3.18e-21;19!CL:0002537;1.21e-20;5!CL:0002097;8.28e-14;2!CL:0000174;1.19e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,7.70e-34,3;CL:0000349,3.35e-21,19;CL:0002537,1.21e-20,5;CL:0002097,8.28e-14,2;CL:0000174,1.19e-09,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!2.64e-18!10;DOID:169!3.79e-08!6;DOID:3095!5.31e-08!22;DOID:2994!5.31e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:154;1.21e-13;2!DOID:4236;1.21e-13;2 | |||
|ontology_enrichment_disease_v019_2=DOID:154,1.21e-13,2;DOID:4236,1.21e-13,2 | |||
|ontology_enrichment_uberon=UBERON:0001896!5.04e-16!3;UBERON:0005290!5.04e-16!3;UBERON:0010096!5.04e-16!3;UBERON:0002298!6.94e-16!8;UBERON:0005631!2.26e-13!14;UBERON:0000158!2.26e-13!14;UBERON:0000305!2.05e-12!7;UBERON:0001875!3.65e-11!2;UBERON:0006514!3.65e-11!2;UBERON:0004871!7.10e-11!8;UBERON:0004733!1.62e-10!12;UBERON:0002028!1.62e-10!12;UBERON:0007277!1.62e-10!12;UBERON:0004732!1.09e-09!13;UBERON:0000013!1.10e-09!5;UBERON:0002410!1.10e-09!5;UBERON:0000924!2.37e-09!173;UBERON:0006601!2.37e-09!173;UBERON:0002308!2.40e-09!9;UBERON:0000125!2.40e-09!9;UBERON:0003076!2.30e-08!15;UBERON:0003057!2.30e-08!15;UBERON:0002346!3.81e-08!90;UBERON:0000988!8.77e-08!3;UBERON:0000478!1.54e-07!24;UBERON:0000073!2.51e-07!94;UBERON:0001016!2.51e-07!94;UBERON:0009663!4.51e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001987;9.82e-26;4!UBERON:0000478;6.43e-17;24!UBERON:0000305;4.69e-15;7!UBERON:0005631;7.67e-11;10!UBERON:0000158;7.67e-11;10!UBERON:0002369;1.19e-09;3!UBERON:0001235;1.19e-09;3!UBERON:0006858;1.19e-09;3!UBERON:0002346;1.80e-07;4!UBERON:0000923;1.80e-07;4!UBERON:0010316;1.80e-07;4!UBERON:0005291;1.80e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.49e-28,14;UBERON:0000158,1.49e-28,14;UBERON:0001987,1.11e-25,4;UBERON:0004340,1.11e-25,4;UBERON:0000478,6.70e-17,24;UBERON:0003124,3.79e-15,7;UBERON:0000305,4.69e-15,7;UBERON:0004871,2.65e-13,8;UBERON:0002369,1.19e-09,3;UBERON:0001235,1.19e-09,3;UBERON:0006858,1.19e-09,3 | |||
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|short_description=p4@SLC18A3 | |||
}} | }} |
Latest revision as of 10:07, 18 September 2015
Short description: | p4@SLC18A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SLC18A3_5end |
Coexpression cluster: | C1313_Placental_mesothelioma_amniotic_neuroectodermal_renal_chorionic_carcinosarcoma |
Association with transcript: | -479bp_to_ENST00000374115, NM_003055, uc001jhw.2_5end |
EntrezGene: | SLC18A3 |
HGNC: | 10936 |
UniProt: | Q16572 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 7.70e-34 | 3 |
extraembryonic cell | 3.35e-21 | 19 |
amnion mesenchymal stem cell | 1.21e-20 | 5 |
cortical cell of adrenal gland | 8.28e-14 | 2 |
steroid hormone secreting cell | 1.19e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.49e-28 | 14 |
membranous layer | 1.49e-28 | 14 |
placenta | 1.11e-25 | 4 |
allantois | 1.11e-25 | 4 |
extraembryonic structure | 6.70e-17 | 24 |
chorion | 3.79e-15 | 7 |
amnion | 4.69e-15 | 7 |
somatic layer of lateral plate mesoderm | 2.65e-13 | 8 |
adrenal gland | 1.19e-09 | 3 |
adrenal cortex | 1.19e-09 | 3 |
adrenal/interrenal gland | 1.19e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 1.21e-13 | 2 |
carcinosarcoma | 1.21e-13 | 2 |