FFCP PHASE1:Hg19::chr12:133313474..133313479,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:133313474..133313479,- | |||
|description=CAGE_peak_at_chr12:133313474..133313479,- | |description=CAGE_peak_at_chr12:133313474..133313479,- | ||
|id=chr12:133313474..133313479,- | |id=chr12:133313474..133313479,- | ||
|ontology_enrichment_celltype=CL:0000548!8.62e-08!679;CL:0000004!8.62e-08!679;CL:0000255!8.62e-08!679;CL:0000220!1.11e-07!246;CL:0000012!1.45e-07!682;CL:0002321!1.80e-07!248;CL:0002371!5.52e-07!591 | |ontology_enrichment_celltype=CL:0000548!8.62e-08!679;CL:0000004!8.62e-08!679;CL:0000255!8.62e-08!679;CL:0000220!1.11e-07!246;CL:0000012!1.45e-07!682;CL:0002321!1.80e-07!248;CL:0002371!5.52e-07!591 | ||
|ontology_enrichment_celltype_v019=CL:0000346;6.73e-16;3!CL:1000428;6.73e-16;3!CL:0000307;6.73e-16;3!CL:0002601;2.32e-12;1!CL:0002559;6.50e-10;5!CL:0002262;8.28e-07;2!CL:0000575;8.28e-07;2!CL:0002545;8.28e-07;2!CL:0002554;8.28e-07;2!CL:1000398;8.28e-07;2!CL:0002596;8.28e-07;2!CL:0002593;8.28e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000346,4.99e-16,3;CL:1000428,4.99e-16,3;CL:0000068,9.80e-16,3;CL:0000069,9.80e-16,3;CL:0000307,9.80e-16,3;CL:0000377,9.80e-16,3;CL:0002601,2.20e-12,1;CL:0002559,5.44e-10,5;CL:0002554,6.42e-07,2;CL:0002545,7.20e-07,2;CL:0002262,8.52e-07,2;CL:1000398,8.52e-07,2;CL:0002596,9.02e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000377;6.73e-16;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!2.17e-07!312;UBERON:0000483!7.58e-07!309 | |ontology_enrichment_uberon=UBERON:0000119!2.17e-07!312;UBERON:0000483!7.58e-07!309 | ||
|ontology_enrichment_uberon_v019=UBERON:0000412;6.73e-16;3!UBERON:0001992;6.73e-16;3!UBERON:0002073;6.50e-10;5!UBERON:0003126;2.52e-07;7!UBERON:0001005;2.52e-07;7!UBERON:0003513;3.24e-07;7!UBERON:0001281;8.28e-07;2!UBERON:0003497;8.28e-07;2!UBERON:0003909;8.28e-07;2!UBERON:0005800;8.28e-07;2!UBERON:0003835;8.28e-07;2!UBERON:0001515;8.28e-07;2!UBERON:0002456;8.28e-07;2!UBERON:0005396;8.28e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000412,4.99e-16,3;UBERON:0001992,4.99e-16,3;UBERON:0002073,5.44e-10,5;UBERON:0005086,5.44e-10,5;UBERON:0003126,2.95e-07,7;UBERON:0001005,2.95e-07,7;UBERON:0003513,4.04e-07,7;UBERON:0005800,7.20e-07,2;UBERON:0001515,7.20e-07,2;UBERON:0001281,8.52e-07,2;UBERON:0003497,8.52e-07,2;UBERON:0003909,8.52e-07,2;UBERON:0003835,8.52e-07,2;UBERON:0005396,9.02e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0,0.123766352960047,0,0,0,0,0,0.246242116153576,0,0,0.286235987131057,0.273748850145768,0.251085279189606,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0.30120591877825,0.369754010166788,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0.689491361473237,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0,0.261958150995425,1.09288586487763,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0,1.47065232138347,0,0.446498641420399,0,0.112611480483322,0,1.89853131913626,0.732806975721629,0,0,0.872188104285069,0,0.506522046658319,0,0,0.354668382198357,0.560677600142307,1.06748995729705,0,0.311211035399766,0,0.163461903113459,0,0,0,0,0.570471821544449,0,0.23486899728753,0,0.280901613404497,0.204154171254893,0,0,1.18800285728205,0,1.82032272387605,0,0.168336113954066,0,0,0,0,0,0.340296549480063,0,0.213557388818567,0.423863802319124,0,0,0,0,0,0.292311015483596,0,0,0,0,0.302256294682921,0.847802961552438,0,0.272746120590835,0.286804595389004,0,0,0,0,0,0,1.56449532329816,0,2.76269842704961,0,0,0.118306800039844,0,0,0.220587945464788,0,0,0.134831308160164,0,0.38474715694639,0,1.40241773803446,0,0,0,0,0,0,0,0.514703430895577,0,0,0,0,0,0,0,0,0.117408694235822,0.288732895522148,0,0,0,0,0,0,0,0,0,0.283550194484773,0.0895585227028483,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.36669142910475,0,7.15312891703765,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0.336255431980582,0,0,0,0.254094624222463,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,3.32870879020994,0.30239029332968,0,0,0,0,0,0,0,0.154209693802656,0.177561725313127,0.657017248110473,0.519254429183621,0.116210378459959,0,0,0.0920809889358963,0.459257792658427,0.182091168006717,0,0.451199612907412,0.231046011313244,0.784349769176855,1.46139224653261,0,0,0,0,0,0.541892875087706,0.501689773854853,0.764628819135115,0.831076008928724,0,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0,0,0,0.290012154876366,0.462145851343933,0.307007349452259,0.137836572484531,0,0,0.170453254832202,0.178064071293475,0,0.192190067365106,0,0,0,0,0.6970372701606,0,0,0,0.18532421910392,0,0,0,0,0.255897791311334,0,1.27281299170375,0,0,0.54907405947211,0.117812402345686,0.202182481573316,0,0.421258456238981,0.975267478179181,0,1.05650146756755,0.136499911407986,0,0,0,0,0,0,0,0,0.6196469961995,0.281695602532241,0,0,0.7133421029625,1.41904425628239,0,0,0.379473173765715,0,0.288666338176536,2.01090682660736,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0.245040215981032,0,0.28853842595289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0.33307196799782,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,0.296521128680622,0.123563938946503,0.313265848516366,0,0,0,0,0,0,0,0,0,0,0,0.207376382794494,0,0,0,0,0,0,0,0.195984794828755,0.174118413160805,0.17472666824203,0,0,0.0730893170861856,0.164230914106418,0,0,0,0,0,0,0,0.0801588202515337,0,0,0.144090417154106,0,0,0,0,0,0,0,0.203996435272644,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0.0846733320657845,0,0,0.321506296930038,0,0,0,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0.326587360109409,0,0.164185041498678,0.511164065356265,0.113312091520126,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0.151649117541648,0,0,0,0.144921028610825,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0.38582807654183,0,0,0,0,0,0,0,0.163565394255844,0.327609848846413,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0.109209638192014,0.169732529954025,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0.118193840883968,0.111231401892069,0,0,0,0,0.215927591218621,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0.126166424835079,0,0.126698501011437,0,0,0,0.250707539292375,1.97024615367422,0.535928260312357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325613074443898,0.106727345877715,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,0,0.123766352960047,0,0,0,0,0,0.246242116153576,0,0,0.286235987131057,0.273748850145768,0.251085279189606,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0.30120591877825,0.369754010166788,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0.689491361473237,0,0,0,0,0.224723484445085,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,0.378139268656271,0.221729397462564,0,0.261958150995425,1.09288586487763,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,0,0.402829317109147,0,0,1.47065232138347,0,0.446498641420399,0,0.112611480483322,0,1.89853131913626,0.732806975721629,0,0,0.872188104285069,0,0.506522046658319,0,0,0.354668382198357,0.560677600142307,1.06748995729705,0,0.311211035399766,0,0.163461903113459,0,0,0,0,0.570471821544449,0,0.23486899728753,0,0.280901613404497,0.204154171254893,0,0,1.18800285728205,0,1.82032272387605,0,0.168336113954066,0,0,0,0,0,0.340296549480063,0,0.213557388818567,0.423863802319124,0,0,0,0,0,0.292311015483596,0,0,0,0,0.302256294682921,0.847802961552438,0,0.272746120590835,0.286804595389004,0,0,0,0,0,0,1.56449532329816,0,2.76269842704961,0,0,0.118306800039844,0,0,0.220587945464788,0,0,0.134831308160164,0,0.38474715694639,0,1.40241773803446,0,0,0,0,0,0,0,0.514703430895577,0,0,0,0,0,0,0,0,0.117408694235822,0.288732895522148,0,0,0,0,0,0,0,0,0,0.283550194484773,0.0895585227028483,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,0,0.36669142910475,0,7.15312891703765,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0.336255431980582,0,0,0,0.254094624222463,0,0.773288812777695,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,3.32870879020994,0.30239029332968,0,0,0,0,0,0,0,0.154209693802656,0.177561725313127,0.657017248110473,0.519254429183621,0.116210378459959,0,0,0.0920809889358963,0.459257792658427,0.182091168006717,0,0.451199612907412,0.231046011313244,0.784349769176855,1.46139224653261,0,0,0,0,0,0.541892875087706,0.501689773854853,0.764628819135115,0.831076008928724,0,0,0,0.256450125116389,0.328014645699706,0,0,0,0,0,0,0,0.290012154876366,0.462145851343933,0.307007349452259,0.137836572484531,0,0,0.170453254832202,0.178064071293475,0,0.192190067365106,0,0,0,0,0.6970372701606,0,0,0,0.18532421910392,0,0,0,0,0.255897791311334,0,1.27281299170375,0,0,0.54907405947211,0.117812402345686,0.202182481573316,0,0.421258456238981,0.975267478179181,0,1.05650146756755,0.136499911407986,0,0,0,0,0,0,0,0,0.6196469961995,0.281695602532241,0,0,0.7133421029625,1.41904425628239,0,0,0.379473173765715,0,0.288666338176536,2.01090682660736,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0.245040215981032,0,0.28853842595289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0.33307196799782,0,0,0,0,0,0.284136146806413,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0,0,0,0,0,0,0.296521128680622,0.123563938946503,0.313265848516366,0,0,0,0,0,0,0,0,0,0,0,0.207376382794494,0,0,0,0,0,0,0,0.195984794828755,0.174118413160805,0.17472666824203,0,0,0.0730893170861856,0.164230914106418,0,0,0,0,0,0,0,0.0801588202515337,0,0,0.144090417154106,0,0,0,0,0,0,0,0.203996435272644,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0824158583811665,0,0,0.0846733320657845,0,0,0.321506296930038,0,0,0,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0.326587360109409,0,0.164185041498678,0.511164065356265,0.113312091520126,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0.151649117541648,0,0,0,0.144921028610825,0.149254802886874,0,0,0,0,0,0,0.151230923763239,0,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0.192619830407303,0,0,0,0,0,0,0,0,0,0.38582807654183,0,0,0,0,0,0,0,0.163565394255844,0.327609848846413,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0.109209638192014,0.169732529954025,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0.0981477185010256,0.11796972334774,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0.118193840883968,0.111231401892069,0,0,0,0,0.215927591218621,0,0,0,0.116241425368125,0,0,0,0,0,0,0,0,0,0,0,0.955538938977433,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0,0,0,0,0.126166424835079,0,0.126698501011437,0,0,0,0.250707539292375,1.97024615367422,0.535928260312357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325613074443898,0.106727345877715,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr12:133313474..133313479,- | |short_description=p@chr12:133313474..133313479,- | ||
}} | }} |
Latest revision as of 06:55, 24 July 2015
Short description: | p@chr12:133313474..133313479, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:133313474..133313479, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle dermal papilla cell | 4.99e-16 | 3 |
stem cell of epidermis | 4.99e-16 | 3 |
duct epithelial cell | 9.80e-16 | 3 |
branched duct epithelial cell | 9.80e-16 | 3 |
tracheal epithelial cell | 9.80e-16 | 3 |
tracheoblast | 9.80e-16 | 3 |
uterine smooth muscle cell | 2.20e-12 | 1 |
hair follicle cell | 5.44e-10 | 5 |
fibroblast of lymphatic vessel | 6.42e-07 | 2 |
thoracic aorta endothelial cell | 7.20e-07 | 2 |
endothelial cell of sinusoid | 8.52e-07 | 2 |
endothelial cell of hepatic sinusoid | 8.52e-07 | 2 |
smooth muscle cell of the carotid artery | 9.02e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
dermal papilla | 4.99e-16 | 3 |
papillary layer of dermis | 4.99e-16 | 3 |
hair follicle | 5.44e-10 | 5 |
hair follicle placode | 5.44e-10 | 5 |
trachea | 2.95e-07 | 7 |
respiratory airway | 2.95e-07 | 7 |
trunk blood vessel | 4.04e-07 | 7 |
segment of aorta | 7.20e-07 | 2 |
thoracic aorta | 7.20e-07 | 2 |
hepatic sinusoid | 8.52e-07 | 2 |
abdomen blood vessel | 8.52e-07 | 2 |
sinusoid | 8.52e-07 | 2 |
abdominal segment blood vessel | 8.52e-07 | 2 |
carotid artery segment | 9.02e-07 | 2 |