FFCP PHASE1:Hg19::chr19:41963286..41963299,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:41963286..41963299,- | |||
|coexpression_cluster_id=C144 | |||
|description=CAGE_peak_at_chr19:41963286..41963299,- | |description=CAGE_peak_at_chr19:41963286..41963299,- | ||
|id=chr19:41963286..41963299,- | |id=chr19:41963286..41963299,- | ||
|ontology_enrichment_celltype=CL:0000791!2.79e-14!18;CL:0000789!2.79e-14!18;CL:0002420!2.79e-14!18;CL:0002419!2.79e-14!18;CL:0000790!2.79e-14!18;CL:0000815!3.55e-12!2;CL:0000792!3.55e-12!2;CL:0002677!3.55e-12!2;CL:0000084!5.02e-10!25;CL:0000827!5.02e-10!25;CL:0000624!8.36e-09!6;CL:0000898!2.12e-08!3;CL:0002127!3.95e-07!1;CL:0000914!3.95e-07!1;CL:0000911!3.95e-07!1;CL:0000814!3.95e-07!1;CL:0002042!3.95e-07!1;CL:0002039!3.95e-07!1;CL:0002040!3.95e-07!1;CL:0002041!3.95e-07!1 | |ontology_enrichment_celltype=CL:0000791!2.79e-14!18;CL:0000789!2.79e-14!18;CL:0002420!2.79e-14!18;CL:0002419!2.79e-14!18;CL:0000790!2.79e-14!18;CL:0000815!3.55e-12!2;CL:0000792!3.55e-12!2;CL:0002677!3.55e-12!2;CL:0000084!5.02e-10!25;CL:0000827!5.02e-10!25;CL:0000624!8.36e-09!6;CL:0000898!2.12e-08!3;CL:0002127!3.95e-07!1;CL:0000914!3.95e-07!1;CL:0000911!3.95e-07!1;CL:0000814!3.95e-07!1;CL:0002042!3.95e-07!1;CL:0002039!3.95e-07!1;CL:0002040!3.95e-07!1;CL:0002041!3.95e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0002127;7.62e-26;1!CL:0000911;7.62e-26;1!CL:0000814;7.62e-26;1!CL:0000815;1.46e-13;2!CL:0000792;1.46e-13;2!CL:0002677;1.46e-13;2!CL:0000898;1.74e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,7.62e-26,1;CL:0000914,7.62e-26,1;CL:0000911,7.62e-26,1;CL:0000814,7.62e-26,1;CL:0002042,7.62e-26,1;CL:0002039,7.62e-26,1;CL:0002040,7.62e-26,1;CL:0002041,7.62e-26,1;CL:0000893,1.21e-13,2;CL:0002489,1.21e-13,2;CL:0000809,1.21e-13,2;CL:0000808,1.21e-13,2;CL:0000894,1.21e-13,2;CL:0000806,1.21e-13,2;CL:0000807,1.21e-13,2;CL:0000805,1.21e-13,2;CL:0002425,1.21e-13,2;CL:0000815,1.37e-13,2;CL:0000792,1.37e-13,2;CL:0002677,1.37e-13,2;CL:0000898,1.67e-09,3 | |||
|ontology_enrichment_development_v019=CL:0002425;1.21e-13;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006947!4.08e-08!3;UBERON:0004054!4.08e-08!3;UBERON:0002134!4.97e-07!1;UBERON:0005208!4.97e-07!1;UBERON:0005946!4.97e-07!1;UBERON:0005965!4.97e-07!1;UBERON:0002078!4.97e-07!1;UBERON:0000998!7.82e-07!1;UBERON:0006868!7.82e-07!1;UBERON:0006834!8.27e-07!1 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.80e-07,4;UBERON:0005058,1.80e-07,4;UBERON:0009113,1.80e-07,4;UBERON:0003295,1.80e-07,4;UBERON:0005562,1.80e-07,4 | |||
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|short_description=p@chr19:41963286..41963299,- | |short_description=p@chr19:41963286..41963299,- | ||
}} | }} |
Latest revision as of 08:31, 26 July 2015
Short description: | p@chr19:41963286..41963299, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:41963286..41963299, - |
Coexpression cluster: | C144_CD4_tonsil_NK_appendix_CD8_splenic_mycosis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 7.62e-26 | 1 |
immature NK T cell | 7.62e-26 | 1 |
effector T cell | 7.62e-26 | 1 |
mature NK T cell | 7.62e-26 | 1 |
immature NK T cell stage IV | 7.62e-26 | 1 |
immature NK T cell stage I | 7.62e-26 | 1 |
immature NK T cell stage II | 7.62e-26 | 1 |
immature NK T cell stage III | 7.62e-26 | 1 |
thymocyte | 1.21e-13 | 2 |
double negative thymocyte | 1.21e-13 | 2 |
double-positive, alpha-beta thymocyte | 1.21e-13 | 2 |
DN4 thymocyte | 1.21e-13 | 2 |
DN1 thymic pro-T cell | 1.21e-13 | 2 |
DN2 thymocyte | 1.21e-13 | 2 |
DN3 thymocyte | 1.21e-13 | 2 |
immature single positive thymocyte | 1.21e-13 | 2 |
early T lineage precursor | 1.21e-13 | 2 |
regulatory T cell | 1.37e-13 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.37e-13 | 2 |
naive regulatory T cell | 1.37e-13 | 2 |
naive T cell | 1.67e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.80e-07 | 4 |
hemolymphoid system gland | 1.80e-07 | 4 |
thymic region | 1.80e-07 | 4 |
pharyngeal gland | 1.80e-07 | 4 |
thymus primordium | 1.80e-07 | 4 |