FFCP PHASE1:Hg19::chr1:201332458..201332469,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7139 | |EntrezGene=7139 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11949 | |HGNC=11949 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_ENST00000476888_5end | |association_with_transcript=8bp_to_ENST00000476888_5end | ||
|cluster_id=chr1:201332458..201332469,- | |||
|coexpression_cluster_id=C20 | |||
|description=CAGE_peak_16_at_TNNT2_5end | |description=CAGE_peak_16_at_TNNT2_5end | ||
|id=chr1:201332458..201332469,- | |id=chr1:201332458..201332469,- | ||
|ontology_enrichment_celltype=CL:0000188!2.52e-13!9 | |ontology_enrichment_celltype=CL:0000188!2.52e-13!9 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0010227;1.88e-21;1!UBERON:0010226;2.30e-21;1!UBERON:0000358;4.22e-21;1!UBERON:0004140;7.72e-21;1!UBERON:0005062;8.99e-21;4!UBERON:0007284;8.99e-21;4 | |||
|ontology_enrichment_disease=DOID:114!1.27e-16!2;DOID:178!4.19e-09!1;DOID:326!4.19e-09!1;DOID:3978!4.19e-09!1;DOID:3394!4.19e-09!1;DOID:5844!4.19e-09!1;DOID:1287!9.39e-09!4 | |||
|ontology_enrichment_disease_v019=DOID:114;7.33e-41;2!DOID:178;3.45e-21;1!DOID:326;3.45e-21;1!DOID:3978;3.45e-21;1!DOID:3394;3.45e-21;1!DOID:5844;3.45e-21;1!DOID:1287;5.17e-21;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,7.33e-41,2;DOID:178,3.45e-21,1;DOID:326,3.45e-21,1;DOID:3978,3.45e-21,1;DOID:3394,3.45e-21,1;DOID:5844,3.45e-21,1;DOID:1287,5.17e-21,4 | |||
|ontology_enrichment_uberon=UBERON:0007100!1.23e-26!27;UBERON:0003103!1.11e-18!69;UBERON:0000948!9.22e-15!24;UBERON:0005498!9.22e-15!24;UBERON:0004140!9.22e-15!24;UBERON:0009881!9.22e-15!24;UBERON:0004141!9.22e-15!24;UBERON:0003084!9.22e-15!24;UBERON:0007005!9.22e-15!24;UBERON:0004139!9.22e-15!24;UBERON:0004291!9.22e-15!24;UBERON:0004151!2.07e-11!3;UBERON:0003978!2.81e-11!3;UBERON:0009751!2.81e-11!3;UBERON:0000946!2.81e-11!3;UBERON:0002523!2.81e-11!3;UBERON:0005983!2.81e-11!3;UBERON:0002165!2.81e-11!3;UBERON:0002062!2.81e-11!3;UBERON:0007280!2.81e-11!3;UBERON:0002079!3.31e-09!1;UBERON:0002084!3.58e-09!1;UBERON:0002082!3.58e-09!1;UBERON:0004706!3.58e-09!1;UBERON:0002146!3.87e-09!1;UBERON:0005623!3.87e-09!1;UBERON:0002135!4.89e-09!1;UBERON:0007029!6.65e-09!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;3.03e-50;25!UBERON:0004151;1.06e-27;3!UBERON:0003978;2.55e-27;3!UBERON:0000946;2.55e-27;3!UBERON:0000948;1.12e-22;22!UBERON:0002079;1.88e-21;1!UBERON:0002084;2.30e-21;1!UBERON:0002082;2.30e-21;1!UBERON:0002146;2.82e-21;1!UBERON:0005623;2.82e-21;1!UBERON:0002135;5.71e-21;1!UBERON:0002081;2.02e-11;2!UBERON:0002133;3.52e-11;2!UBERON:0003103;4.82e-10;61!UBERON:0010313;6.67e-09;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,1.61e-46,27;UBERON:0004151,1.06e-27,3;UBERON:0003978,2.38e-27,3;UBERON:0009751,2.38e-27,3;UBERON:0000946,2.38e-27,3;UBERON:0002523,2.38e-27,3;UBERON:0005983,2.38e-27,3;UBERON:0002165,2.38e-27,3;UBERON:0002062,2.38e-27,3;UBERON:0007280,2.38e-27,3;UBERON:0002079,1.88e-21,1;UBERON:0002084,2.30e-21,1;UBERON:0002082,2.30e-21,1;UBERON:0010226,2.30e-21,1;UBERON:0002146,2.82e-21,1;UBERON:0005623,2.82e-21,1;UBERON:0002135,5.16e-21,1;UBERON:0000948,8.11e-21,24;UBERON:0005498,8.11e-21,24;UBERON:0004140,8.11e-21,24;UBERON:0009881,8.11e-21,24;UBERON:0004141,8.11e-21,24;UBERON:0003084,8.11e-21,24;UBERON:0007005,8.11e-21,24;UBERON:0004139,8.11e-21,24;UBERON:0004291,8.11e-21,24;UBERON:0003103,2.27e-18,68;UBERON:0004797,2.51e-12,7;UBERON:0002081,2.02e-11,2;UBERON:0010227,2.02e-11,2;UBERON:0002133,3.35e-11,2;UBERON:0001009,5.05e-11,112;UBERON:0010313,6.54e-09,10;UBERON:0002342,6.54e-09,10;UBERON:0005062,6.54e-09,10;UBERON:0007023,2.49e-08,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.551346289938122,0,0,0.426133137080504,0.623224249527161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.6306712165393,9.16641696046735,0,8.38651802095763,22.3197545031017,3.12440040418622,2.14987111957524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,15.7232971802141,12.5797474369432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,4.69281884806909,0,0,0,0.603821380773079,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0.551346289938122,0,0,0.426133137080504,0.623224249527161,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.6306712165393,9.16641696046735,0,8.38651802095763,22.3197545031017,3.12440040418622,2.14987111957524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,15.7232971802141,12.5797474369432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20008329398946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,4.69281884806909,0,0,0,0.603821380773079,0 | ||
|short_description=p16@TNNT2 | |short_description=p16@TNNT2 | ||
}} | }} |
Latest revision as of 17:24, 19 September 2015
Short description: | p16@TNNT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_16_at_TNNT2_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 8bp_to_ENST00000476888_5end |
EntrezGene: | TNNT2 |
HGNC: | 11949 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 1.61e-46 | 27 |
cardiac chamber | 1.06e-27 | 3 |
valve | 2.38e-27 | 3 |
cardiac mesenchyme | 2.38e-27 | 3 |
cardial valve | 2.38e-27 | 3 |
tunica intima | 2.38e-27 | 3 |
heart layer | 2.38e-27 | 3 |
endocardium | 2.38e-27 | 3 |
endocardial cushion | 2.38e-27 | 3 |
presumptive endocardium | 2.38e-27 | 3 |
left cardiac atrium | 1.88e-21 | 1 |
heart left ventricle | 2.30e-21 | 1 |
cardiac ventricle | 2.30e-21 | 1 |
future cardiac ventricle | 2.30e-21 | 1 |
pulmonary valve | 2.82e-21 | 1 |
semi-lunar valve | 2.82e-21 | 1 |
mitral valve | 5.16e-21 | 1 |
heart | 8.11e-21 | 24 |
primitive heart tube | 8.11e-21 | 24 |
primary heart field | 8.11e-21 | 24 |
anterior lateral plate mesoderm | 8.11e-21 | 24 |
heart tube | 8.11e-21 | 24 |
heart primordium | 8.11e-21 | 24 |
cardiac mesoderm | 8.11e-21 | 24 |
cardiogenic plate | 8.11e-21 | 24 |
heart rudiment | 8.11e-21 | 24 |
compound organ | 2.27e-18 | 68 |
blood vessel layer | 2.51e-12 | 7 |
cardiac atrium | 2.02e-11 | 2 |
future cardiac atrium | 2.02e-11 | 2 |
atrioventricular valve | 3.35e-11 | 2 |
circulatory system | 5.05e-11 | 112 |
neural crest-derived structure | 6.54e-09 | 10 |
neural crest | 6.54e-09 | 10 |
neural fold | 6.54e-09 | 10 |
adult organism | 2.49e-08 | 114 |
Ontology term | p-value | n |
---|---|---|
heart disease | 7.33e-41 | 2 |
vascular disease | 3.45e-21 | 1 |
ischemia | 3.45e-21 | 1 |
extrinsic cardiomyopathy | 3.45e-21 | 1 |
myocardial ischemia | 3.45e-21 | 1 |
myocardial infarction | 3.45e-21 | 1 |
cardiovascular system disease | 5.17e-21 | 4 |