FFCP PHASE1:Hg19::chr1:92371839..92371867,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7049 | |EntrezGene=7049 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11774 | |HGNC=11774 | ||
|TSSclassifier=strong | |||
|UniProt=Q03167 | |UniProt=Q03167 | ||
|association_with_transcript=24bp_to_ENST00000370399_5end | |association_with_transcript=24bp_to_ENST00000370399_5end | ||
|cluster_id=chr1:92371839..92371867,- | |||
|coexpression_cluster_id=C267 | |||
|description=CAGE_peak_11_at_TGFBR3_5end | |description=CAGE_peak_11_at_TGFBR3_5end | ||
|id=chr1:92371839..92371867,- | |id=chr1:92371839..92371867,- | ||
|ontology_enrichment_celltype=CL:0000039!4.70e-39!7;CL:0000586!4.70e-39!7;CL:0002541!5.40e-34!3 | |ontology_enrichment_celltype=CL:0000039!4.70e-39!7;CL:0000586!4.70e-39!7;CL:0002541!5.40e-34!3 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.53e-49;3!CL:0000039;1.35e-37;7!CL:0000586;1.35e-37;7!CL:0000349;2.11e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.20e-49,3;CL:0000039,1.88e-37,7;CL:0000586,1.88e-37,7;CL:0000349,2.04e-08,19 | |||
|ontology_enrichment_development_v019=UBERON:0003124;2.66e-18;1!UBERON:0009117;1.79e-07;10!UBERON:0005564;1.79e-07;10 | |||
|ontology_enrichment_disease=DOID:1799!7.89e-13!1;DOID:10165!7.89e-13!1;DOID:1798!7.89e-13!1;DOID:3095!1.93e-12!22;DOID:2994!1.93e-12!22 | |||
|ontology_enrichment_disease_v019=DOID:1799;3.16e-18;1!DOID:10165;3.16e-18;1!DOID:1798;3.16e-18;1!DOID:3095;2.96e-12;22!DOID:2994;2.96e-12;22 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,3.16e-18,1;DOID:10165,3.16e-18,1;DOID:1798,3.16e-18,1;DOID:3095,3.28e-12,22;DOID:2994,3.28e-12,22 | |||
|ontology_enrichment_uberon=UBERON:0000476!5.40e-34!3;UBERON:0000920!5.40e-34!3;UBERON:0003124!6.32e-26!7;UBERON:0005631!7.74e-20!14;UBERON:0000158!7.74e-20!14;UBERON:0000473!7.01e-13!8;UBERON:0000478!1.49e-11!24;UBERON:0003135!1.60e-09!11 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.53e-49;3!UBERON:0000920;1.53e-49;3!UBERON:0005631;2.07e-15;10!UBERON:0000158;2.07e-15;10!UBERON:0000478;2.29e-11;24!UBERON:0000473;4.02e-09;8!UBERON:0003135;7.15e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,1.20e-49,3;UBERON:0003124,4.97e-38,7;UBERON:0005631,2.94e-19,14;UBERON:0000158,2.94e-19,14;UBERON:0000478,2.19e-11,24;UBERON:0000473,4.36e-09,8;UBERON:0003135,7.59e-07,11 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36994326789761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91845782408015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1528195219403,2.2439411102443,0,2.23300811812344,1.55715908783166,1.5991043280559,0,0,0,0,0.392125068635479,0.335643173951685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35939774226505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.59529413996125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.1363441267518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356760272332706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386595690378,0,0.0918948995348449,1.0028301571695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36994326789761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.91845782408015,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1528195219403,2.2439411102443,0,2.23300811812344,1.55715908783166,1.5991043280559,0,0,0,0,0.392125068635479,0.335643173951685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35939774226505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.59529413996125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.1363441267518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356760272332706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22386595690378,0,0.0918948995348449,1.0028301571695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p11@TGFBR3 | |short_description=p11@TGFBR3 | ||
}} | }} |
Latest revision as of 19:47, 19 September 2015
Short description: | p11@TGFBR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_11_at_TGFBR3_5end |
Coexpression cluster: | C267_pancreatic_placenta_choriocarcinoma_testicular_teratocarcinoma_chorionic_clear |
Association with transcript: | 24bp_to_ENST00000370399_5end |
EntrezGene: | TGFBR3 |
HGNC: | 11774 |
UniProt: | Q03167 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.20e-49 | 3 |
germ line cell | 1.88e-37 | 7 |
germ cell | 1.88e-37 | 7 |
extraembryonic cell | 2.04e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 1.20e-49 | 3 |
chorion | 4.97e-38 | 7 |
extraembryonic membrane | 2.94e-19 | 14 |
membranous layer | 2.94e-19 | 14 |
extraembryonic structure | 2.19e-11 | 24 |
testis | 4.36e-09 | 8 |
male reproductive organ | 7.59e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 3.16e-18 | 1 |
endocrine pancreas cancer | 3.16e-18 | 1 |
pancreatic endocrine carcinoma | 3.16e-18 | 1 |
germ cell and embryonal cancer | 3.28e-12 | 22 |
germ cell cancer | 3.28e-12 | 22 |