FFCP PHASE1:Hg19::chr21:47424908..47424924,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr21:47424908..47424924,+ | |||
|coexpression_cluster_id=C2637 | |||
|description=CAGE_peak_at_chr21:47424908..47424924,+ | |description=CAGE_peak_at_chr21:47424908..47424924,+ | ||
|id=chr21:47424908..47424924,+ | |id=chr21:47424908..47424924,+ | ||
|ontology_enrichment_celltype=CL:0000055!3.32e-27!180;CL:0000057!5.58e-16!75;CL:0002620!4.27e-14!23;CL:0000680!3.88e-12!57;CL:0000056!3.88e-12!57;CL:0000355!3.88e-12!57;CL:0000393!1.15e-11!60;CL:0000211!1.15e-11!60;CL:0000187!3.90e-11!54;CL:0000183!5.52e-11!59;CL:0000192!1.05e-07!42;CL:0000514!1.05e-07!42 | |ontology_enrichment_celltype=CL:0000055!3.32e-27!180;CL:0000057!5.58e-16!75;CL:0002620!4.27e-14!23;CL:0000680!3.88e-12!57;CL:0000056!3.88e-12!57;CL:0000355!3.88e-12!57;CL:0000393!1.15e-11!60;CL:0000211!1.15e-11!60;CL:0000187!3.90e-11!54;CL:0000183!5.52e-11!59;CL:0000192!1.05e-07!42;CL:0000514!1.05e-07!42 | ||
|ontology_enrichment_celltype_v019=CL:0000359;4.39e-09;32!CL:0002539;7.29e-09;10!CL:0002620;2.82e-08;23!CL:0000632;4.03e-08;3!CL:0000192;1.17e-07;43!CL:0000187;3.84e-07;55 | |||
|ontology_enrichment_celltype_v019_2=CL:0000187,3.59e-11,55;CL:0000680,2.30e-10,58;CL:0000056,2.30e-10,58;CL:0000355,2.30e-10,58;CL:0000393,1.22e-09,61;CL:0000211,1.22e-09,61;CL:0000359,5.95e-09,32;CL:0002539,6.62e-09,10;CL:0000192,1.15e-08,43;CL:0000514,1.15e-08,43;CL:0000632,1.94e-08,3;CL:0002620,2.59e-08,23;CL:0000057,3.71e-08,76;CL:0000048,2.80e-07,427;CL:0000723,5.34e-07,433 | |||
|ontology_enrichment_development_v019=CL:0000514;1.17e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.12e-09;5!DOID:450;2.12e-09;5!DOID:66;2.12e-09;5!DOID:423;2.12e-09;5!DOID:0080000;2.12e-09;5!DOID:11722;2.12e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,1.86e-09,5;DOID:450,1.86e-09,5;DOID:66,1.86e-09,5;DOID:423,1.86e-09,5;DOID:0080000,1.86e-09,5;DOID:11722,1.86e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!5.03e-14!83;UBERON:0002329!5.03e-14!83;UBERON:0003077!5.03e-14!83;UBERON:0003059!5.03e-14!83;UBERON:0007282!5.03e-14!83;UBERON:0009618!5.03e-14!83;UBERON:0007285!5.03e-14!83;UBERON:0004290!5.47e-13!70;UBERON:0002385!5.69e-12!63;UBERON:0001015!5.69e-12!63;UBERON:0000383!5.69e-12!63;UBERON:0000486!1.58e-11!82;UBERON:0001134!2.37e-11!61;UBERON:0002036!2.37e-11!61;UBERON:0003082!2.37e-11!61;UBERON:0005256!1.64e-10!143;UBERON:0000475!2.77e-10!365;UBERON:0002199!1.18e-07!45;UBERON:0002416!1.18e-07!45;UBERON:0002097!4.48e-07!40;UBERON:0002100!4.77e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0004237;7.29e-09;10!UBERON:0004695;7.29e-09;10!UBERON:0002111;7.29e-09;10!UBERON:0004178;7.29e-09;10!UBERON:0004573;5.38e-07;33!UBERON:0004571;5.38e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001134,2.04e-09,62;UBERON:0002036,2.04e-09,62;UBERON:0003082,2.04e-09,62;UBERON:0007524,2.18e-09,73;UBERON:0003104,2.20e-09,160;UBERON:0009142,2.20e-09,160;UBERON:0002385,5.47e-09,64;UBERON:0001015,5.47e-09,64;UBERON:0000383,5.47e-09,64;UBERON:0004237,6.62e-09,10;UBERON:0004695,6.62e-09,10;UBERON:0002111,6.62e-09,10;UBERON:0004178,6.62e-09,10;UBERON:0002329,9.80e-09,71;UBERON:0003059,9.80e-09,71;UBERON:0007282,9.80e-09,71;UBERON:0004290,9.80e-09,71;UBERON:0009618,9.80e-09,71;UBERON:0003077,1.50e-08,72;UBERON:0007285,1.50e-08,72;UBERON:0005256,6.33e-08,122;UBERON:0000486,9.41e-08,83;UBERON:0007503,1.48e-07,78;UBERON:0004573,3.22e-07,33;UBERON:0004571,3.22e-07,33 | |||
|phase1_expression=0.363356758541113,0,3.10099689011137,0,0,0.872338524100369,0,1.89515962028049,0,0,0,0,0,0.74259811776028,0.331397375727916,1.34465029290355,1.20538905604795,1.46062018077475,0,5.0479633811483,0.204000691244253,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,7.31420598941885,0,0,30.7223279526881,2.50668955317945,0.289693037921647,0,0,0,0,0.087834785693126,0.130979075497713,0,0,0,0.348259474598534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.379891534993739,0.264818361626438,1.14734648299525,0.354668382198357,0.560677600142307,0,0,0.622422070799533,0,0.326923806226917,16.9520318962323,0,0.468642863667593,0.312160076830321,1.71141546463335,0.747243402759005,0.117434498643765,0.161872944368132,0.140450806702248,0.204154171254893,0.122834317311768,0,2.37600571456411,0,0.910161361938026,0.718618141816238,0.168336113954066,0,0,0.877955241761676,0.30648779579902,0.150238058906597,0.226864366320042,2.15267562826634,5.55249210928275,8.05341224406335,1.80054657650641,0.721367704669072,0.257640540045629,2.41951913231067,0.843881661206331,0.487185025805993,0.757301322732344,7.64014158731085,0.646584227275248,2.84007674013291,0.10075209822764,2.03472710772585,0,0.272746120590835,0,0,0,0.116193942869518,0,0,0,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,1.6462960453256,1.47008711385542,0,0,0,0,0,0,0.219500570817251,0,0,0,1.3032332212413,0,0,0.115930404975077,0.117408694235822,0,0,0,0,0,0,0.702012795417713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.2933531432838,1.42198887333556,10.7296933755565,1.690605505112,1.06375246633948,1.04007436911366,0.514414748524284,0,0.266422179016099,3.0025378668211,2.71310802695722,0,0,0.710783897485092,0,0,0,0,0,0,0,2.87549826589899,0,2.85273810081437,0.434343920002738,0.410952645100767,0.179060963239896,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,1.8403723757871,0,0,0.415941723061614,0.178428988797162,0.473107245101804,0.702848489956279,5.11608369537122,0,0,1.32845119707087,0.368738337083406,1.99832313276591,15.2724902820938,0.686286847621712,0,0,0,0,0,0,0.744323423456331,0,0,5.76626171650654,1.53512174720011,0.160853921143607,0,0.771048469013278,0.355123450626254,2.13530605635904,0,0.813472649219715,0,0,0,0.918515585316854,0.182091168006717,0.131124414959424,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0,0.165018999841176,0,0,0,2.12675580242668,0.308097234229289,0.307007349452259,0.275673144969061,0.966782203814463,0.145016693914229,0.0852266274161009,2.8490251406956,0,0,0,0,0,2.83331112147576,0,1.54016790088044,0,2.60979897622522,3.7064843820784,0.286249773483982,0.744316738719335,1.2655176988749,0,2.55897791311334,0,0.636406495851874,0,0.719489830333259,0.54907405947211,0,1.2130948894399,0,0.842516912477962,0.975267478179181,0,1.05650146756755,8.32649459588713,0.424216295861138,0,2.2054613741845,0,0,0.578775534266688,0,1.01455188481352,0,0.281695602532241,0,0.491245205065606,0.7133421029625,0,0.211107635297664,0.658589785919804,2.65631221636001,0.349934720244983,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0.23874448473769,0,0.307160702099232,0,0.422008249231538,0,0,1.26675244876796,0.398495976502139,0.552567831062295,0,0,0,3.42143546427988,0,0,0,0.986434056369336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.663475559587348,0,0,0.10893846351899,0,2.92410982314429,0.113942055847001,0.23056390438806,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0,0,1.18375320854817,0,0,0.189559738885464,0,0,1.32930774541437,0,0,0,0.853828638089378,0,0,0,0,0,2.92376255201748,0,0,0,0.678923115418936,0,0.225980740780532,0,0,0.0633107959558787,0,0.0801588202515337,0,0,0,0,0,0,0,0,0.67952103036807,0.313808538937,0.101998217636322,0.288950589901519,0,0.136905378891993,0,0,0,0.279282401272254,0.458320848023367,1.43574604915363,0,0,0.223171457441873,0.0671834724867263,1.80149941771202,0,0,0,0,0.295282444544246,0,0,0.136203406111576,0.160753148465019,0.275078873194468,0.415440338029185,0,0,0.0607495566580247,0,0,0.262272940674991,0,0,0,0,0,0,0,0,0,0,0,0.511164065356265,0.113312091520126,0.146552233678082,0,0.129282956361551,0.13223260174269,0,0,0.106787412567695,0.78602152549833,0,0,0,0,0,0,0.2506898940227,0,0,0,0,0.122026264901963,0.3755727921195,0,0,0,0,0.124980407962107,0,0,0.470531639396343,0,0,0.74627401443437,0.701139929541673,1.66441758450784,0.568209015825267,0.50313580350515,0,0,0.151230923763239,0.466311601748341,0.147855149989634,0,1.34940933649081,0.465788870628778,1.24411862352257,0.797525143673985,0.521745061811734,0.300515217994437,0.380805212168795,0.406870733204662,0.363697318405119,0.537052785212442,0,0.796191777397232,0,0.6867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| ||
|short_description=p@chr21:47424908..47424924,+ | |short_description=p@chr21:47424908..47424924,+ | ||
}} | }} |
Latest revision as of 18:45, 28 July 2015
Short description: | p@chr21:47424908..47424924, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr21:47424908..47424924, + |
Coexpression cluster: | C2637_Chondrocyte_Pericytes_Mesenchymal_Fibroblast_Cardiac_Smooth_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle cell | 3.59e-11 | 55 |
muscle precursor cell | 2.30e-10 | 58 |
myoblast | 2.30e-10 | 58 |
multi-potent skeletal muscle stem cell | 2.30e-10 | 58 |
electrically responsive cell | 1.22e-09 | 61 |
electrically active cell | 1.22e-09 | 61 |
vascular associated smooth muscle cell | 5.95e-09 | 32 |
aortic smooth muscle cell | 6.62e-09 | 10 |
smooth muscle cell | 1.15e-08 | 43 |
smooth muscle myoblast | 1.15e-08 | 43 |
hepatic stellate cell | 1.94e-08 | 3 |
skin fibroblast | 2.59e-08 | 23 |
fibroblast | 3.71e-08 | 76 |
multi fate stem cell | 2.80e-07 | 427 |
somatic stem cell | 5.34e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
skeletal muscle tissue | 2.04e-09 | 62 |
striated muscle tissue | 2.04e-09 | 62 |
myotome | 2.04e-09 | 62 |
dense mesenchyme tissue | 2.18e-09 | 73 |
mesenchyme | 2.20e-09 | 160 |
entire embryonic mesenchyme | 2.20e-09 | 160 |
muscle tissue | 5.47e-09 | 64 |
musculature | 5.47e-09 | 64 |
musculature of body | 5.47e-09 | 64 |
blood vessel smooth muscle | 6.62e-09 | 10 |
arterial system smooth muscle | 6.62e-09 | 10 |
artery smooth muscle tissue | 6.62e-09 | 10 |
aorta smooth muscle tissue | 6.62e-09 | 10 |
somite | 9.80e-09 | 71 |
presomitic mesoderm | 9.80e-09 | 71 |
presumptive segmental plate | 9.80e-09 | 71 |
dermomyotome | 9.80e-09 | 71 |
trunk paraxial mesoderm | 9.80e-09 | 71 |
paraxial mesoderm | 1.50e-08 | 72 |
presumptive paraxial mesoderm | 1.50e-08 | 72 |
trunk mesenchyme | 6.33e-08 | 122 |
multilaminar epithelium | 9.41e-08 | 83 |
epithelial vesicle | 1.48e-07 | 78 |
systemic artery | 3.22e-07 | 33 |
systemic arterial system | 3.22e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 1.86e-09 | 5 |
myotonic disease | 1.86e-09 | 5 |
muscle tissue disease | 1.86e-09 | 5 |
myopathy | 1.86e-09 | 5 |
muscular disease | 1.86e-09 | 5 |
myotonic dystrophy | 1.86e-09 | 5 |