FFCP PHASE1:Hg19::chr1:183622442..183622457,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=403314 | |EntrezGene=403314 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=32152 | |HGNC=32152 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WW27 | |UniProt=Q8WW27 | ||
|association_with_transcript=0bp_to_ENST00000308641,ENST00000481562,NM_203454,uc001gqn.2_5end | |association_with_transcript=0bp_to_ENST00000308641,ENST00000481562,NM_203454,uc001gqn.2_5end | ||
|cluster_id=chr1:183622442..183622457,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_APOBEC4_5end | |description=CAGE_peak_1_at_APOBEC4_5end | ||
|id=chr1:183622442..183622457,- | |id=chr1:183622442..183622457,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.76e-23;10!UBERON:0005564;4.76e-23;10!UBERON:0007297;1.37e-13;2!UBERON:0008947;2.30e-08;29 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003127!4.85e-18!2;UBERON:0007023!1.01e-13!115;UBERON:0001896!5.90e-12!3;UBERON:0005290!5.90e-12!3;UBERON:0010096!5.90e-12!3;UBERON:0001301!6.31e-10!1;UBERON:0002171!7.50e-10!1;UBERON:0006518!7.50e-10!1;UBERON:0008949!7.50e-10!1;UBERON:0000101!7.50e-10!1;UBERON:0002167!7.50e-10!1;UBERON:0002336!2.46e-09!1;UBERON:0001018!2.46e-09!1;UBERON:0002473!2.46e-09!1;UBERON:0005340!2.46e-09!1;UBERON:0002316!2.46e-09!1;UBERON:0003544!2.46e-09!1;UBERON:0001020!2.46e-09!1;UBERON:0005970!2.46e-09!1;UBERON:0002437!2.46e-09!1;UBERON:0005178!1.54e-08!34;UBERON:0002224!1.54e-08!34;UBERON:0005181!2.79e-08!35;UBERON:0003135!1.17e-07!11;UBERON:0008947!1.38e-07!38;UBERON:0003258!1.38e-07!38 | |ontology_enrichment_uberon=UBERON:0003127!4.85e-18!2;UBERON:0007023!1.01e-13!115;UBERON:0001896!5.90e-12!3;UBERON:0005290!5.90e-12!3;UBERON:0010096!5.90e-12!3;UBERON:0001301!6.31e-10!1;UBERON:0002171!7.50e-10!1;UBERON:0006518!7.50e-10!1;UBERON:0008949!7.50e-10!1;UBERON:0000101!7.50e-10!1;UBERON:0002167!7.50e-10!1;UBERON:0002336!2.46e-09!1;UBERON:0001018!2.46e-09!1;UBERON:0002473!2.46e-09!1;UBERON:0005340!2.46e-09!1;UBERON:0002316!2.46e-09!1;UBERON:0003544!2.46e-09!1;UBERON:0001020!2.46e-09!1;UBERON:0005970!2.46e-09!1;UBERON:0002437!2.46e-09!1;UBERON:0005178!1.54e-08!34;UBERON:0002224!1.54e-08!34;UBERON:0005181!2.79e-08!35;UBERON:0003135!1.17e-07!11;UBERON:0008947!1.38e-07!38;UBERON:0003258!1.38e-07!38 | ||
|ontology_enrichment_uberon_v019=UBERON:0001301;9.79e-26;1!UBERON:0003135;4.98e-21;11!UBERON:0003127;8.28e-14;2!UBERON:0000473;1.51e-13;8!UBERON:0000991;2.26e-11;21!UBERON:0003101;6.93e-11;22!UBERON:0000079;6.93e-11;22!UBERON:0006947;1.67e-09;3!UBERON:0004054;1.67e-09;3!UBERON:0005904;1.92e-07;4!UBERON:0003133;8.35e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,9.79e-26,1;UBERON:0003135,4.98e-21,11;UBERON:0003127,8.28e-14,2;UBERON:0000473,1.51e-13,8;UBERON:0000991,2.18e-11,21;UBERON:0009196,2.18e-11,21;UBERON:0009117,2.18e-11,21;UBERON:0005564,2.18e-11,21;UBERON:0004176,6.70e-11,22;UBERON:0003101,6.93e-11,22;UBERON:0000079,6.93e-11,22;UBERON:0006947,1.67e-09,3;UBERON:0004054,1.67e-09,3;UBERON:0003133,1.02e-08,48;UBERON:0007023,6.48e-08,114;UBERON:0003886,8.61e-08,54;UBERON:0005904,1.92e-07,4;UBERON:0005178,3.22e-07,34;UBERON:0002224,3.22e-07,34;UBERON:0005156,3.68e-07,59;UBERON:0000990,3.68e-07,59;UBERON:0005181,4.98e-07,35;UBERON:0002553,6.16e-07,61 | |||
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|short_description=p1@APOBEC4 | |short_description=p1@APOBEC4 | ||
}} | }} |
Latest revision as of 04:00, 19 September 2015
Short description: | p1@APOBEC4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_APOBEC4_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000308641, ENST00000481562, NM_203454, uc001gqn.2_5end |
EntrezGene: | APOBEC4 |
HGNC: | 32152 |
UniProt: | Q8WW27 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epididymis | 9.79e-26 | 1 |
male reproductive organ | 4.98e-21 | 11 |
open tracheal system trachea | 8.28e-14 | 2 |
testis | 1.51e-13 | 8 |
gonad | 2.18e-11 | 21 |
indifferent external genitalia | 2.18e-11 | 21 |
indifferent gonad | 2.18e-11 | 21 |
gonad primordium | 2.18e-11 | 21 |
external genitalia | 6.70e-11 | 22 |
male organism | 6.93e-11 | 22 |
male reproductive system | 6.93e-11 | 22 |
male genital duct | 1.67e-09 | 3 |
internal male genitalia | 1.67e-09 | 3 |
reproductive organ | 1.02e-08 | 48 |
adult organism | 6.48e-08 | 114 |
body cavity precursor | 8.61e-08 | 54 |
duct of male reproductive system | 1.92e-07 | 4 |
thoracic cavity element | 3.22e-07 | 34 |
thoracic cavity | 3.22e-07 | 34 |
reproductive structure | 3.68e-07 | 59 |
reproductive system | 3.68e-07 | 59 |
thoracic segment organ | 4.98e-07 | 35 |
anatomical cavity | 6.16e-07 | 61 |