FFCP PHASE1:Hg19::chr1:205419076..205419103,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=93273 | |EntrezGene=93273 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18725 | |HGNC=18725 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-17bp_to_ENST00000367154_5end | |association_with_transcript=-17bp_to_ENST00000367154_5end | ||
|cluster_id=chr1:205419076..205419103,- | |||
|description=CAGE_peak_1_at_LEMD1_5end | |description=CAGE_peak_1_at_LEMD1_5end | ||
|id=chr1:205419076..205419103,- | |id=chr1:205419076..205419103,- | ||
|ontology_enrichment_celltype=CL:0000066!9.10e-33!254;CL:0000223!4.95e-17!59;CL:0002076!4.24e-14!43;CL:0002251!8.84e-08!21;CL:0002321!2.15e-07!248;CL:0002368!2.39e-07!13;CL:0000220!4.33e-07!246 | |ontology_enrichment_celltype=CL:0000066!9.10e-33!254;CL:0000223!4.95e-17!59;CL:0002076!4.24e-14!43;CL:0002251!8.84e-08!21;CL:0002321!2.15e-07!248;CL:0002368!2.39e-07!13;CL:0000220!4.33e-07!246 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.98e-11;42!CL:1000507;4.52e-09;10!CL:1000494;4.52e-09;10!CL:1000497;8.30e-08;17!CL:0002518;8.30e-08;17!CL:0002251;1.09e-07;20!CL:0002368;4.86e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.71e-31,253;CL:0000223,7.71e-19,58;CL:0002076,2.10e-14,42;CL:1000507,5.73e-09,10;CL:1000494,5.73e-09,10;CL:1000497,7.74e-08,17;CL:0002518,7.74e-08,17;CL:0002251,8.66e-08,20;CL:0002368,7.51e-07,13 | |||
|ontology_enrichment_development_v019=CL:0000223;5.71e-10;58 | |||
|ontology_enrichment_disease=DOID:305!1.26e-18!106;DOID:0050687!6.16e-14!143;DOID:14566!1.01e-09!239;DOID:162!6.33e-09!235;DOID:1749!9.89e-08!14 | |ontology_enrichment_disease=DOID:305!1.26e-18!106;DOID:0050687!6.16e-14!143;DOID:14566!1.01e-09!239;DOID:162!6.33e-09!235;DOID:1749!9.89e-08!14 | ||
|ontology_enrichment_disease_v019=DOID:1749;5.54e-09;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.06e-17,106;DOID:0050687,2.05e-11,143;DOID:1749,5.01e-09,14;DOID:14566,4.96e-07,239;DOID:162,7.87e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.23e-15!169;UBERON:0000925!6.23e-15!169;UBERON:0006595!6.23e-15!169;UBERON:0001007!2.90e-11!155;UBERON:0001555!2.90e-11!155;UBERON:0007026!2.90e-11!155;UBERON:0000466!6.71e-11!126;UBERON:0000464!8.62e-10!104;UBERON:0000077!1.13e-09!130;UBERON:0001004!2.88e-09!72;UBERON:0005911!3.31e-09!82;UBERON:0001048!1.62e-08!168;UBERON:0001041!1.95e-08!98;UBERON:0004921!2.58e-08!129;UBERON:0004185!2.58e-08!129;UBERON:0003133!8.53e-08!48;UBERON:0005156!1.40e-07!59;UBERON:0000990!1.40e-07!59;UBERON:0000058!1.58e-07!26;UBERON:0006554!2.70e-07!44;UBERON:0005177!5.06e-07!107;UBERON:0001008!6.50e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;4.52e-09;10!UBERON:0009773;4.52e-09;10!UBERON:0001231;4.52e-09;10!UBERON:0004810;4.52e-09;10!UBERON:0006554;3.13e-08;30!UBERON:0001008;3.13e-08;30!UBERON:0002113;1.08e-07;24!UBERON:0011143;1.08e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.82e-12,160;UBERON:0000925,1.82e-12,160;UBERON:0006595,1.82e-12,160;UBERON:0005177,2.13e-11,101;UBERON:0006554,9.81e-10,47;UBERON:0001007,9.85e-10,145;UBERON:0001555,9.85e-10,145;UBERON:0007026,9.85e-10,145;UBERON:0001008,2.23e-09,48;UBERON:0004810,5.73e-09,10;UBERON:0005911,2.02e-08,82;UBERON:0002113,3.63e-08,26;UBERON:0003918,3.63e-08,26;UBERON:0011143,3.63e-08,26;UBERON:0005095,3.63e-08,26;UBERON:0007687,3.63e-08,26;UBERON:0005172,6.26e-08,54;UBERON:0005173,6.26e-08,54;UBERON:0009569,1.05e-07,112;UBERON:0001041,1.91e-07,87;UBERON:0006555,2.31e-07,16;UBERON:0004819,2.31e-07,16;UBERON:0001048,4.03e-07,160;UBERON:0002294,5.91e-07,9;UBERON:0001173,5.91e-07,9;UBERON:0004912,5.91e-07,9;UBERON:0004921,6.73e-07,118;UBERON:0005156,7.97e-07,59;UBERON:0000990,7.97e-07,59;UBERON:0003133,8.62e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,2.09340350391728,4.15038607047327,4.22027165165526,0,0,0,0,0,0,1.23121058076788,0,2.19418305034661,5.15224776835902,8.48621435451882,4.5195350254129,0.840547463227464,0.57470412614962,0.629686250509434,0,0,0.309632246632152,0.919421224478927,3.0120591877825,3.69754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25618263945135,0.520237390239513,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0,0,0,7.37371573879729,7.31707011626461,3.68906099911129,2.16115474571226,8.74308691902101,5.93255108455087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.760272105718513,0.976248230192678,0,0,0.17859945656816,0.44905874525234,0.225222960966644,0,0,0,0,0,3.48875241714027,0,0,0,0.286836620748814,0,0,1.06748995729705,0,1.24484414159907,0.134710672069688,0.980771418680752,5.14615253992767,1.72852777344,0,0,0,0,0.117434498643765,0.161872944368132,0,0,0.491337269247072,0,0,0,0,0,0,0.250237039743928,0,0,0,0,0.226864366320042,0.538168907066586,0,0,1.20036438433761,0.206105058476878,0,0,0.506328996723799,0,0.757301322732344,0.0920498986422993,0,0,0.10075209822764,0,4.05847791642923,2.72746120590835,4.30206893083506,0.853815942907168,0.662648841607426,1.74290914304278,4.66474747569167,0.756962552626885,0.72995471815166,0,0,0,0,0,0.236613600079688,0,0.482022059766964,0.110293972732394,0.653638332277218,0.71181185733329,0,0,0.38474715694639,2.21446636387394,1.40241773803446,0,0,0,0,0,0,0.122988438543114,1.20097467208968,3.07300799144152,1.1240175325762,1.80952150340936,12.59202854156,0,0,0,2.66639931442677,0.117408694235822,0,0.462985512576611,0,1.58040879591855,0.858486162094873,0,0,0,1.87467667973554,4.03157107677263,6.80520466763455,1.88072897675981,1.45316969256981,4.98397482914775,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.41849132023278,0,0,0,0,0,0,0,0.301439377059586,0.871533458600294,0.499864955910285,0,0,0,0,0,0,0,0,0,1.90544744788996,0.197030760201927,0,0,8.38512259934129,0,1.54657762555539,0.502548796003046,0.637938751653163,0,0,0,0.12269149171914,0,0,0,0.178428988797162,0,0,0,0,1.03473071292505,0,0.184369168541703,0,0,0.343143423810856,0,0,0,0.606255142892519,1.66435439510497,5.14063498660456,0,0,0,0,0,0,0,0.154209693802656,0,0.246381468041427,0.519254429183621,0,0.362578348774867,1.20303882181971,3.22283461275637,0,0,0,9.92639148396306,10.7821471946181,1.56869953835371,5.84556898613043,4.43316841350078,0,0,0,0,0.541892875087706,1.00337954770971,5.60727800699084,5.81753206250107,3.1342465661105,0,0,1.53870075069834,0.984043937099117,1.30151357865721,1.54561517471583,0,0,1.72279661398852,0.650060246036521,0,0.096670718292122,0,0.307007349452259,0.137836572484531,0,0.290033387828457,0.0852266274161009,0.534192213880424,1.4875642382488,0.768760269460425,2.4246415373971,1.11273558941105,0,0,0,0,0.532306030317022,0,0,0.143124886741991,0,0,0,0,0,0.318203247925937,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0.281695602532241,0.286822704408103,0,0,1.41904425628239,0,0,0,0,1.34710957815717,3.35151137767894,1.08890984861323,1.12972560932135,0.86101074534246,1.68471475667626,3.10401107475673,3.21612760289743,0,0,0,0,0,0,0,0,3.73884248946156,1.92495971052672,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.835218521685727,0,0,0,0,1.12284324244932,0,0,0.891547074219827,21.5943471572874,36.2891616801289,16.3330574457951,47.9170695274802,0,0,0.333926115068718,8.5698014597915,0,0.996239941255349,0,0,1.02268682502155,0,0,1.52776196950456,1.61119057208048,0,0,0,0,0,0,0,0,0,0,2.04828206913899,11.1871606128817,6.38246740773428,0,0,0,0,0,0,0,0,0,0.10893846351899,6.83176346965156,0.384751292518985,0.113942055847001,0,0.987334088507493,2.7161842980502,7.97502899329799,0.183195186803725,0.533034776018635,0,0,0,1.1279783030859,1.76456280885966,3.18861015254101,0.948768663620925,0,2.3209787098083,14.2012543098459,0.424059214301822,0,0.995261931078505,1.41532103205343,0,0.296521128680622,0,0.104421949505455,0,0,0,0,9.97889556553658,5.82672910881823,2.76209081994573,1.20990716048664,0,0.063186579628488,0,0.103688191397247,0,0,0,0,1.99226682220855,0,9.19866613176194,19.1085174958036,5.31061160140456,7.33852006616527,0,0,0.0730893170861856,0.0821154570532092,1.06687918137261,0,0.677942222341597,0.411125773940253,0.19871461170299,0,2.73771935828724,8.97778786817178,1.49417096317547,0.999048047910651,8.21315377778404,0,0,3.60136994970374,3.23056592470125,9.19206735005502,2.71808412147228,3.34729108199466,0.407992870545287,0,0,0,0,0.859530882839914,0,0,0,0,2.59582700648688,0,0,0,0,15.144473438569,4.88455730304787,4.53287221096415,4.31382680666783,0,0,0,0,0,0.550157746388935,0.415440338029185,0,0,0,6.70869375198532,0.788057072991982,4.14391246266485,0.105600336519406,0,6.71703190618059,0,0,0,1.08599920350743,1.72844298240254,0.326587360109409,0,0,0,0.453248366080503,0.146552233678082,0,0.129282956361551,0,0,6.3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| 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| ||
|short_description=p1@LEMD1 | |short_description=p1@LEMD1 | ||
}} | }} |
Latest revision as of 02:55, 20 September 2015
Short description: | p1@LEMD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LEMD1_5end |
Coexpression cluster: | NA |
Association with transcript: | -17bp_to_ENST00000367154_5end |
EntrezGene: | LEMD1 |
HGNC: | 18725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.71e-31 | 253 |
endodermal cell | 7.71e-19 | 58 |
endo-epithelial cell | 2.10e-14 | 42 |
kidney tubule cell | 5.73e-09 | 10 |
nephron tubule epithelial cell | 5.73e-09 | 10 |
kidney cell | 7.74e-08 | 17 |
kidney epithelial cell | 7.74e-08 | 17 |
epithelial cell of alimentary canal | 8.66e-08 | 20 |
respiratory epithelial cell | 7.51e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.82e-12 | 160 |
endoderm | 1.82e-12 | 160 |
presumptive endoderm | 1.82e-12 | 160 |
trunk region element | 2.13e-11 | 101 |
urinary system structure | 9.81e-10 | 47 |
digestive system | 9.85e-10 | 145 |
digestive tract | 9.85e-10 | 145 |
primitive gut | 9.85e-10 | 145 |
renal system | 2.23e-09 | 48 |
nephron tubule epithelium | 5.73e-09 | 10 |
endo-epithelium | 2.02e-08 | 82 |
kidney | 3.63e-08 | 26 |
kidney mesenchyme | 3.63e-08 | 26 |
upper urinary tract | 3.63e-08 | 26 |
kidney rudiment | 3.63e-08 | 26 |
kidney field | 3.63e-08 | 26 |
abdomen element | 6.26e-08 | 54 |
abdominal segment element | 6.26e-08 | 54 |
subdivision of trunk | 1.05e-07 | 112 |
foregut | 1.91e-07 | 87 |
excretory tube | 2.31e-07 | 16 |
kidney epithelium | 2.31e-07 | 16 |
primordium | 4.03e-07 | 160 |
biliary system | 5.91e-07 | 9 |
biliary tree | 5.91e-07 | 9 |
biliary bud | 5.91e-07 | 9 |
subdivision of digestive tract | 6.73e-07 | 118 |
reproductive structure | 7.97e-07 | 59 |
reproductive system | 7.97e-07 | 59 |
reproductive organ | 8.62e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.06e-17 | 106 |
cell type cancer | 2.05e-11 | 143 |
squamous cell carcinoma | 5.01e-09 | 14 |
disease of cellular proliferation | 4.96e-07 | 239 |
cancer | 7.87e-07 | 235 |