FFCP PHASE1:Hg19::chr1:32799803..32799823,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:32799803..32799823,- | |||
|coexpression_cluster_id=C1476 | |||
|description=CAGE_peak_at_chr1:32799803..32799823,- | |description=CAGE_peak_at_chr1:32799803..32799823,- | ||
|id=chr1:32799803..32799823,- | |id=chr1:32799803..32799823,- | ||
|ontology_enrichment_celltype=CL:0000047!6.65e-07!8 | |ontology_enrichment_celltype=CL:0000047!6.65e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000540;4.61e-13;6!CL:0000404;4.61e-13;6!CL:0002319;4.53e-08;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,5.97e-16,8;CL:0000540,4.45e-13,6;CL:0000031,4.45e-13,6;CL:0000404,4.45e-13,6;CL:0002319,3.76e-08,25 | |||
|ontology_enrichment_development_v019=CL:0000031;4.61e-13;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.93e-11!82;UBERON:0005743!2.38e-10!86;UBERON:0000073!5.87e-10!94;UBERON:0001016!5.87e-10!94;UBERON:0001049!8.11e-10!57;UBERON:0005068!8.11e-10!57;UBERON:0006241!8.11e-10!57;UBERON:0007135!8.11e-10!57;UBERON:0000025!1.03e-09!194;UBERON:0000483!1.36e-08!309;UBERON:0002616!3.46e-08!59;UBERON:0000119!4.77e-08!312;UBERON:0002020!5.45e-08!34;UBERON:0003528!5.45e-08!34;UBERON:0004111!6.39e-08!241;UBERON:0002346!1.49e-07!90;UBERON:0002791!3.36e-07!33;UBERON:0003075!3.37e-07!86;UBERON:0007284!3.37e-07!86;UBERON:0001893!5.60e-07!34;UBERON:0000922!7.80e-07!612 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.83e-13,81;UBERON:0001016,2.39e-13,89;UBERON:0001049,6.29e-09,56;UBERON:0005068,6.29e-09,56;UBERON:0006241,6.29e-09,56;UBERON:0007135,6.29e-09,56;UBERON:0000025,8.81e-09,192;UBERON:0000073,2.13e-07,53;UBERON:0002616,2.13e-07,53;UBERON:0000923,7.33e-07,560;UBERON:0010316,7.33e-07,560;UBERON:0005291,7.33e-07,560;UBERON:0006598,7.33e-07,560;UBERON:0010317,7.33e-07,560;UBERON:0002532,7.33e-07,560;UBERON:0003528,9.31e-07,34;UBERON:0002020,9.31e-07,34 | |||
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| ||
|short_description=p@chr1:32799803..32799823,- | |short_description=p@chr1:32799803..32799823,- | ||
}} | }} |
Latest revision as of 07:20, 28 July 2015
Short description: | p@chr1:32799803..32799823, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:32799803..32799823, - |
Coexpression cluster: | C1476_Neurons_iPS_occipital_temporal_parietal_duodenum_spinal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 5.97e-16 | 8 |
neuron | 4.45e-13 | 6 |
neuroblast | 4.45e-13 | 6 |
electrically signaling cell | 4.45e-13 | 6 |
neural cell | 3.76e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.83e-13 | 81 |
nervous system | 2.39e-13 | 89 |
neural tube | 6.29e-09 | 56 |
neural rod | 6.29e-09 | 56 |
future spinal cord | 6.29e-09 | 56 |
neural keel | 6.29e-09 | 56 |
tube | 8.81e-09 | 192 |
regional part of nervous system | 2.13e-07 | 53 |
regional part of brain | 2.13e-07 | 53 |
germ layer | 7.33e-07 | 560 |
germ layer / neural crest | 7.33e-07 | 560 |
embryonic tissue | 7.33e-07 | 560 |
presumptive structure | 7.33e-07 | 560 |
germ layer / neural crest derived structure | 7.33e-07 | 560 |
epiblast (generic) | 7.33e-07 | 560 |
brain grey matter | 9.31e-07 | 34 |
gray matter | 9.31e-07 | 34 |