FFCP PHASE1:Hg19::chr6:27791862..27791877,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=121504,554313,8294,8359,8360,8361,8362,8363,8364,8365,8366,8367,8368,8370 | |EntrezGene=121504,554313,8294,8359,8360,8361,8362,8363,8364,8365,8366,8367,8368,8370 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20510,29607,4781,4782,4783,4784,4785,4787,4788,4789,4790,4791,4793,4794 | |HGNC=20510,29607,4781,4782,4783,4784,4785,4787,4788,4789,4790,4791,4793,4794 | ||
|TSSclassifier=strong | |||
|UniProt=P62805 | |UniProt=P62805 | ||
|association_with_transcript=-6bp_to_ENST00000355057_5end | |association_with_transcript=-6bp_to_ENST00000355057_5end | ||
|cluster_id=chr6:27791862..27791877,+ | |||
|coexpression_cluster_id=C600 | |||
|description=CAGE_peak_10_at_HIST1H4C_5end,CAGE_peak_10_at_HIST1H4F_5end,CAGE_peak_9_at_HIST1H4A_5end,CAGE_peak_9_at_HIST1H4B_5end,CAGE_peak_9_at_HIST1H4D_5end,CAGE_peak_9_at_HIST1H4E_5end,CAGE_peak_9_at_HIST1H4H_5end,CAGE_peak_9_at_HIST1H4I_5end,CAGE_peak_9_at_HIST1H4J_5end,CAGE_peak_9_at_HIST1H4K_5end,CAGE_peak_9_at_HIST1H4L_5end,CAGE_peak_9_at_HIST2H4A_5end,CAGE_peak_9_at_HIST2H4B_5end,CAGE_peak_9_at_HIST4H4_5end | |description=CAGE_peak_10_at_HIST1H4C_5end,CAGE_peak_10_at_HIST1H4F_5end,CAGE_peak_9_at_HIST1H4A_5end,CAGE_peak_9_at_HIST1H4B_5end,CAGE_peak_9_at_HIST1H4D_5end,CAGE_peak_9_at_HIST1H4E_5end,CAGE_peak_9_at_HIST1H4H_5end,CAGE_peak_9_at_HIST1H4I_5end,CAGE_peak_9_at_HIST1H4J_5end,CAGE_peak_9_at_HIST1H4K_5end,CAGE_peak_9_at_HIST1H4L_5end,CAGE_peak_9_at_HIST2H4A_5end,CAGE_peak_9_at_HIST2H4B_5end,CAGE_peak_9_at_HIST4H4_5end | ||
|id=chr6:27791862..27791877,+ | |id=chr6:27791862..27791877,+ | ||
|ontology_enrichment_celltype=CL:0000037!5.12e-17!172;CL:0000566!5.12e-17!172;CL:0002032!2.38e-16!165;CL:0000837!2.38e-16!165;CL:0000988!3.16e-15!182;CL:0000738!4.81e-14!140;CL:0002031!7.76e-14!124;CL:0002057!1.28e-12!42;CL:0000763!4.10e-12!112;CL:0000049!4.10e-12!112;CL:0000860!5.38e-12!45;CL:0002087!2.28e-10!119;CL:0000557!1.73e-09!71;CL:0000839!2.05e-09!70;CL:0000003!1.89e-08!722;CL:0002009!4.22e-08!65;CL:0000766!5.97e-08!76;CL:0002194!2.47e-07!63;CL:0000576!2.47e-07!63;CL:0000040!2.47e-07!63;CL:0000559!2.47e-07!63;CL:0000219!9.87e-07!390 | |ontology_enrichment_celltype=CL:0000037!5.12e-17!172;CL:0000566!5.12e-17!172;CL:0002032!2.38e-16!165;CL:0000837!2.38e-16!165;CL:0000988!3.16e-15!182;CL:0000738!4.81e-14!140;CL:0002031!7.76e-14!124;CL:0002057!1.28e-12!42;CL:0000763!4.10e-12!112;CL:0000049!4.10e-12!112;CL:0000860!5.38e-12!45;CL:0002087!2.28e-10!119;CL:0000557!1.73e-09!71;CL:0000839!2.05e-09!70;CL:0000003!1.89e-08!722;CL:0002009!4.22e-08!65;CL:0000766!5.97e-08!76;CL:0002194!2.47e-07!63;CL:0000576!2.47e-07!63;CL:0000040!2.47e-07!63;CL:0000559!2.47e-07!63;CL:0000219!9.87e-07!390 | ||
|ontology_enrichment_celltype_v019=CL:0000860;2.22e-17;33!CL:0002057;2.22e-17;33!CL:0000473;1.62e-14;39!CL:0000234;1.62e-14;39!CL:0000576;1.56e-10;48!CL:0000766;7.18e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.13e-20,136;CL:0000473,1.34e-20,48;CL:0000234,1.34e-20,48;CL:0000860,3.61e-20,42;CL:0002057,3.61e-20,42;CL:0000037,9.99e-20,168;CL:0002031,1.17e-19,120;CL:0002032,1.38e-18,161;CL:0000837,1.38e-18,161;CL:0000557,5.41e-18,67;CL:0000839,6.84e-18,66;CL:0000988,1.94e-17,177;CL:0000763,1.31e-16,108;CL:0000049,1.31e-16,108;CL:0000766,4.05e-16,72;CL:0002009,2.53e-15,61;CL:0002194,5.88e-14,59;CL:0000576,5.88e-14,59;CL:0000040,5.88e-14,59;CL:0000559,5.88e-14,59;CL:0002087,7.99e-14,115;CL:0000034,4.60e-08,441;CL:0000048,1.09e-07,427;CL:0000134,1.42e-07,354;CL:0000723,3.59e-07,433;CL:0002320,6.17e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;9.46e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.08e-08!80;UBERON:0001737!7.77e-08!9;UBERON:0001474!1.77e-07!86;UBERON:0004765!3.54e-07!101;UBERON:0001434!3.54e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.02e-11;9!UBERON:0001557;2.02e-11;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.89e-17,76;UBERON:0001474,1.05e-14,82;UBERON:0002405,1.51e-14,93;UBERON:0004765,1.96e-14,90;UBERON:0002390,6.08e-12,98;UBERON:0003061,6.08e-12,98;UBERON:0001434,1.63e-11,100;UBERON:0001737,2.02e-11,9;UBERON:0002193,5.01e-11,108 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331397375727916,73.2834409632435,47.6128677138942,49.6610861463414,34.1552959153355,0.123121058076788,0.612002073732759,0.313454721478088,0,0.136874425072884,0.251085279189606,0.305653622991805,0.492603536699674,0.472264687882075,5.11373559903575,5.37361157336098,5.10893206943051,1.83884244895785,0.6024118375565,0.369754010166788,0.619737604642413,0,42.278463264218,0,0,0,0,0,0,8.57849608799432,14.7371618038636,8.00527401919793,10.9241647345672,10.2791972005456,6.19412741790207,7.76769459269806,7.42866048934392,4.96612682766029,5.17118521104928,1.93645405075148,1.35426486594342,4.89430082810772,10.0975275521403,4.49446968890169,8.57034898638527,3.85114832491312,5.11469700639233,6.92687730392104,10.7710375115681,5.54092175692502,5.22376629531451,11.9150897185139,10.5879782329248,5.52747063564835,13.5585558789252,3.9093992046921,6.05399502633369,9.20694089968912,3.79754864929061,9.92899845666126,7.44115049877652,11.5312255029607,3.81917345898083,7.50884464207532,4.66104201421532,5.13022938734247,8.15558376516269,12.4211624559951,14.0796995569058,20.753267227961,12.4531295540898,18.3493995703598,13.2130675721884,11.4950487990897,7.93253847341835,28.6216126360609,0,0,0,38.3296852879175,10.6496626966492,64.2657166851188,0,0.393010762749165,0,100.98064321597,16.6220355983131,15.1503297835115,31.1722765452658,132.578443693357,79.8382009256809,72.8846513180114,63.0973002572486,159.857967017643,145.536409919504,179.401753922611,183.496411809803,67.8139220620023,9.04548035288569,14.9822863730239,31.360657141493,147.755382877626,20.6939066545037,21.3049016199231,29.8563236583013,12.4240511586398,27.996588515826,26.6126572445545,23.4897185761326,18.4300720062362,2.49861453104692,8.05042656949657,22.1704559168683,0,0,0,0,0,29.9198394713861,0,0,0.579386075843295,0,0.486634870302636,0.0945348171640679,0.443458794925128,0.087834785693126,0.0654895377488563,0.364295288292542,0,0,0.174129737299267,0.132957960518865,0,16.5878524126237,10.0293525358983,0.198762407366705,0.860234595106124,0,0,0.838998872419812,0,0.208994966536811,0,0.35576626268671,0,0,0,0.732186172644509,0.735326160691737,0,0.267899184852239,0,0.450445921933289,1.53316637465883,0,0,1.31780417436063,0,0,0.496971951695318,0,1.32409180813219,0.286836620748814,0,0,0,0.24666754841716,0,0.538842688278752,0,0.151357427644931,0,0.468642863667593,0,0,0.149448680551801,0.352303495931295,1.61872944368132,0.140450806702248,0,0.491337269247072,0.103325781175765,0,0.494533858557114,0,0,0,0.250237039743928,0,0.438977620880838,0.30648779579902,0.45071417671979,0.113432183160021,0,0,0,0.300091096084402,0,0,0,14.3459882405076,0.194874010322397,0.252433774244115,0,19.5591728750762,0,0.201504196455281,0.169560592310488,0,0,0,0.121973706129595,0,0.348581828608555,0.10366105501537,140.290393086849,215.33664185474,1.56449532329816,0,1.38134921352481,0,0,112.391460037852,154.086406731385,113.757206105004,109.19103300507,135.303134781384,99.8909306457717,75.1010386452116,101.054054539553,86.9528574698842,0.738155454624648,5.60967095213783,0,0,0,0,0,2.20731549707325,0.122988438543114,20.7597050461216,0,0,0.201057944823262,0.0925884451585296,0.325808305310325,2.07986957055916,0,18.3170039860621,14.2064520025344,0,66.2069282984553,41.4754051871424,1.58040879591855,0.858486162094873,0,0,0.148631162288728,2.81201501960331,11.2548025893236,17.7218871552983,0.268675568108545,0,1.15014803749563,0,36.5401001154888,24.8793738648926,22.338592779629,19.1888498808098,27.8755755942622,0.381988425558278,0,1.71072446022705,0.102827492703324,61.2699838001592,21.4369824472934,0.112131084345361,0,0.1466765716419,0,0,199.491449603216,0,0,0,7.09245660116391,0.532844358032199,0,0,0,0,0,0.791951872933429,0,2.61460037580088,0,60.8118903205952,43.696366954595,44.2751272914366,0,0,38.511964360994,0,0,0,1.56919201590938,0.197030760201927,0,0.256686072559497,0,0,0,0,213.70948180381,0,0,0,0,0.500170521059677,0,29.9478040604362,27.8349222523572,24.4438743302599,31.3938992180471,0.300946099727719,0,2.0694614258501,0,0,0,0,0.343143423810856,0.206768026122887,0,0,0,0,0.604780586659361,0,3.6830873589135,0,0,0,0,0,0,0.177561725313127,0,0,0.929683027679674,0,0,0,0,0,0.131124414959424,0,0,0,2.92278449306521,0,1.13733384070897,0.850468526382578,0.431831832204279,0,0.270946437543853,0,0,0.831076008928724,0.895499018888713,503.20141690242,753.979840755813,0,0,0,0,0.54941678891006,0,0,0,0,0.193341436584244,0.616194468458578,0.767518373630648,0.137836572484531,0.107420244868274,0.145016693914229,0.511359764496605,0.0890320356467374,0,0,9.18811529961006,0,0,0,0.6970372701606,0,0,0,0.37064843820784,0.143124886741991,0.372158369359667,0,0,0.255897791311334,0,0.636406495851874,0,0,0.274537029736055,0.235624804691373,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,48.5362116514508,0,1.239293992399,1.40847801266121,27.1047455665657,12.5758772496795,0,0.709522128141196,0.211107635297664,0,0,0.699869440489966,0.0962221127255121,0.670302275535787,1.0889098486132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|short_description=p10@HIST1H4C,p10@HIST1H4F,p9@HIST1H4A,p9@HIST1H4B,p9@HIST1H4D,p9@HIST1H4E,p9@HIST1H4H,p9@HIST1H4I,p9@HIST1H4J,p9@HIST1H4K,p9@HIST1H4L,p9@HIST2H4A,p9@HIST2H4B,p9@HIST4H4 | |short_description=p10@HIST1H4C,p10@HIST1H4F,p9@HIST1H4A,p9@HIST1H4B,p9@HIST1H4D,p9@HIST1H4E,p9@HIST1H4H,p9@HIST1H4I,p9@HIST1H4J,p9@HIST1H4K,p9@HIST1H4L,p9@HIST2H4A,p9@HIST2H4B,p9@HIST4H4 | ||
}} | }} |
Latest revision as of 11:19, 17 September 2015
Short description: | p10@HIST1H4C, p10@HIST1H4F, p9@HIST1H4A, p9@HIST1H4B, p9@HIST1H4D, p9@HIST1H4E, p9@HIST1H4H, p9@HIST1H4I, p9@HIST1H4J, p9@HIST1H4K, p9@HIST1H4L, p9@HIST2H4A, p9@HIST2H4B, p9@HIST4H4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_HIST1H4C_5end, CAGE_peak_10_at_HIST1H4F_5end, CAGE_peak_9_at_HIST1H4A_5end, CAGE_peak_9_at_HIST1H4B_5end, CAGE_peak_9_at_HIST1H4D_5end, CAGE_peak_9_at_HIST1H4E_5end, CAGE_peak_9_at_HIST1H4H_5end, CAGE_peak_9_at_HIST1H4I_5end, CAGE_peak_9_at_HIST1H4J_5end, CAGE_peak_9_at_HIST1H4K_5end, CAGE_peak_9_at_HIST1H4L_5end, CAGE_peak_9_at_HIST2H4A_5end, CAGE_peak_9_at_HIST2H4B_5end, CAGE_peak_9_at_HIST4H4_5end |
Coexpression cluster: | C600_Reticulocytes_CD34_HES3GFP_Hep2_Mesenchymal_iPS_CD4 |
Association with transcript: | -6bp_to_ENST00000355057_5end |
EntrezGene: | 121504,554313,8294,8359,8360,8361,8362,8363,8364,8365,8366,8367,8368,8370 |
HGNC: | 29607, 4781, 4782, 4783, 4784, 4785, 4787, 4788, 4789, 4790, 4791, 4793, 4794&submit=Submit 20510, 29607, 4781, 4782, 4783, 4784, 4785, 4787, 4788, 4789, 4790, 4791, 4793, 4794 |
UniProt: | P62805 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.13e-20 | 136 |
defensive cell | 1.34e-20 | 48 |
phagocyte | 1.34e-20 | 48 |
classical monocyte | 3.61e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.61e-20 | 42 |
hematopoietic stem cell | 9.99e-20 | 168 |
hematopoietic lineage restricted progenitor cell | 1.17e-19 | 120 |
hematopoietic oligopotent progenitor cell | 1.38e-18 | 161 |
hematopoietic multipotent progenitor cell | 1.38e-18 | 161 |
granulocyte monocyte progenitor cell | 5.41e-18 | 67 |
myeloid lineage restricted progenitor cell | 6.84e-18 | 66 |
hematopoietic cell | 1.94e-17 | 177 |
myeloid cell | 1.31e-16 | 108 |
common myeloid progenitor | 1.31e-16 | 108 |
myeloid leukocyte | 4.05e-16 | 72 |
macrophage dendritic cell progenitor | 2.53e-15 | 61 |
monopoietic cell | 5.88e-14 | 59 |
monocyte | 5.88e-14 | 59 |
monoblast | 5.88e-14 | 59 |
promonocyte | 5.88e-14 | 59 |
nongranular leukocyte | 7.99e-14 | 115 |
stem cell | 4.60e-08 | 441 |
multi fate stem cell | 1.09e-07 | 427 |
mesenchymal cell | 1.42e-07 | 354 |
somatic stem cell | 3.59e-07 | 433 |
connective tissue cell | 6.17e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.89e-17 | 76 |
bone element | 1.05e-14 | 82 |
immune system | 1.51e-14 | 93 |
skeletal element | 1.96e-14 | 90 |
hematopoietic system | 6.08e-12 | 98 |
blood island | 6.08e-12 | 98 |
skeletal system | 1.63e-11 | 100 |
larynx | 2.02e-11 | 9 |
hemolymphoid system | 5.01e-11 | 108 |