FFCP PHASE1:Hg19::chr6:31238972..31238985,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3107 | |EntrezGene=3107 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=4933 | |HGNC=4933 | ||
|TSSclassifier=strong | |||
|UniProt=Q14838 | |UniProt=Q14838 | ||
|association_with_transcript=0bp_to_M12679_5end | |association_with_transcript=0bp_to_M12679_5end | ||
|cluster_id=chr6:31238972..31238985,- | |||
|coexpression_cluster_id=C641 | |||
|description=CAGE_peak_12_at_HLA-C_5end | |description=CAGE_peak_12_at_HLA-C_5end | ||
|id=chr6:31238972..31238985,- | |id=chr6:31238972..31238985,- | ||
|ontology_enrichment_celltype=CL:0002057!1.84e-14!42;CL:0000766!2.77e-13!76;CL:0000860!6.14e-13!45;CL:0002009!1.28e-11!65;CL:0000738!2.50e-11!140;CL:0002194!3.22e-11!63;CL:0000576!3.22e-11!63;CL:0000040!3.22e-11!63;CL:0000559!3.22e-11!63;CL:0000557!8.18e-11!71;CL:0000839!3.85e-10!70;CL:0000763!1.05e-09!112;CL:0000049!1.05e-09!112;CL:0002032!4.54e-08!165;CL:0000837!4.54e-08!165;CL:0002087!5.55e-08!119;CL:0002031!6.88e-08!124;CL:0000037!1.06e-07!172;CL:0000566!1.06e-07!172 | |ontology_enrichment_celltype=CL:0002057!1.84e-14!42;CL:0000766!2.77e-13!76;CL:0000860!6.14e-13!45;CL:0002009!1.28e-11!65;CL:0000738!2.50e-11!140;CL:0002194!3.22e-11!63;CL:0000576!3.22e-11!63;CL:0000040!3.22e-11!63;CL:0000559!3.22e-11!63;CL:0000557!8.18e-11!71;CL:0000839!3.85e-10!70;CL:0000763!1.05e-09!112;CL:0000049!1.05e-09!112;CL:0002032!4.54e-08!165;CL:0000837!4.54e-08!165;CL:0002087!5.55e-08!119;CL:0002031!6.88e-08!124;CL:0000037!1.06e-07!172;CL:0000566!1.06e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000473;1.01e-22;39!CL:0000234;1.01e-22;39!CL:0000860;8.35e-22;33!CL:0002057;8.35e-22;33!CL:0000766;4.87e-14;69!CL:0000576;7.13e-12;48!CL:0000775;1.28e-10;3!CL:0000763;9.30e-10;100!CL:0000094;1.34e-08;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.10e-23,48;CL:0000234,2.10e-23,48;CL:0000766,1.76e-22,72;CL:0000763,2.24e-20,108;CL:0000049,2.24e-20,108;CL:0000860,2.30e-19,42;CL:0002057,2.30e-19,42;CL:0002194,3.10e-18,59;CL:0000576,3.10e-18,59;CL:0000040,3.10e-18,59;CL:0000559,3.10e-18,59;CL:0002009,1.44e-17,61;CL:0000839,4.49e-16,66;CL:0000557,8.40e-16,67;CL:0000738,1.07e-13,136;CL:0002032,1.63e-12,161;CL:0000837,1.63e-12,161;CL:0000037,7.60e-12,168;CL:0000988,4.63e-11,177;CL:0000775,1.34e-10,3;CL:0000094,1.45e-08,8;CL:0002087,2.95e-08,115;CL:0002031,8.12e-08,120 | |||
|ontology_enrichment_development_v019=CL:0002057;2.14e-16;42!CL:0000049;1.07e-08;108!UBERON:0000358;1.47e-08;1!UBERON:0008801;2.64e-08;1!UBERON:0005754;2.64e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001474!3.29e-09!86;UBERON:0002371!1.48e-08!80;UBERON:0002193!1.12e-07!112;UBERON:0004765!1.26e-07!101;UBERON:0001434!1.26e-07!101;UBERON:0002390!1.74e-07!102;UBERON:0003061!1.74e-07!102;UBERON:0002405!3.88e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0001831;2.64e-08;1!UBERON:0000998;2.64e-08;1!UBERON:0006868;2.64e-08;1!UBERON:0001567;2.64e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.14e-13,76;UBERON:0001474,1.67e-12,82;UBERON:0004765,3.44e-11,90;UBERON:0002405,9.35e-11,93;UBERON:0002390,4.34e-10,98;UBERON:0003061,4.34e-10,98;UBERON:0001434,7.67e-10,100;UBERON:0002193,6.09e-09,108;UBERON:0000998,2.13e-08,1;UBERON:0006868,2.13e-08,1;UBERON:0001831,3.79e-08,1;UBERON:0001567,3.79e-08,1;UBERON:0008801,3.79e-08,1;UBERON:0003081,4.94e-08,203 | |||
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|short_description=p12@HLA-C | |short_description=p12@HLA-C | ||
}} | }} |
Latest revision as of 20:03, 17 September 2015
Short description: | p12@HLA-C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_HLA-C_5end |
Coexpression cluster: | C641_CD14_Neutrophils_Peripheral_Basophils_Whole_Monocytederived_Eosinophils |
Association with transcript: | 0bp_to_M12679_5end |
EntrezGene: | HLA-C |
HGNC: | 4933 |
UniProt: | Q14838 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.10e-23 | 48 |
phagocyte | 2.10e-23 | 48 |
myeloid leukocyte | 1.76e-22 | 72 |
myeloid cell | 2.24e-20 | 108 |
common myeloid progenitor | 2.24e-20 | 108 |
classical monocyte | 2.30e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.30e-19 | 42 |
monopoietic cell | 3.10e-18 | 59 |
monocyte | 3.10e-18 | 59 |
monoblast | 3.10e-18 | 59 |
promonocyte | 3.10e-18 | 59 |
macrophage dendritic cell progenitor | 1.44e-17 | 61 |
myeloid lineage restricted progenitor cell | 4.49e-16 | 66 |
granulocyte monocyte progenitor cell | 8.40e-16 | 67 |
leukocyte | 1.07e-13 | 136 |
hematopoietic oligopotent progenitor cell | 1.63e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.63e-12 | 161 |
hematopoietic stem cell | 7.60e-12 | 168 |
hematopoietic cell | 4.63e-11 | 177 |
neutrophil | 1.34e-10 | 3 |
granulocyte | 1.45e-08 | 8 |
nongranular leukocyte | 2.95e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 8.12e-08 | 120 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.14e-13 | 76 |
bone element | 1.67e-12 | 82 |
skeletal element | 3.44e-11 | 90 |
immune system | 9.35e-11 | 93 |
hematopoietic system | 4.34e-10 | 98 |
blood island | 4.34e-10 | 98 |
skeletal system | 7.67e-10 | 100 |
hemolymphoid system | 6.09e-09 | 108 |
seminal vesicle | 2.13e-08 | 1 |
seminal fluid secreting gland | 2.13e-08 | 1 |
parotid gland | 3.79e-08 | 1 |
cheek | 3.79e-08 | 1 |
parotid gland primordium | 3.79e-08 | 1 |
lateral plate mesoderm | 4.94e-08 | 203 |