FFCP PHASE1:Hg19::chr7:142499841..142499860,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:142499841..142499860,- | |||
|coexpression_cluster_id=C1420 | |||
|description=CAGE_peak_at_chr7:142499841..142499860,- | |description=CAGE_peak_at_chr7:142499841..142499860,- | ||
|id=chr7:142499841..142499860,- | |id=chr7:142499841..142499860,- | ||
|ontology_enrichment_celltype=CL:0000084!9.94e-28!25;CL:0000827!9.94e-28!25;CL:0000542!9.55e-25!53;CL:0000051!9.55e-25!53;CL:0000838!9.82e-24!52;CL:0000791!1.29e-22!18;CL:0000789!1.29e-22!18;CL:0002420!1.29e-22!18;CL:0002419!1.29e-22!18;CL:0000790!1.29e-22!18;CL:0000625!4.94e-12!11;CL:0000624!4.91e-11!6;CL:0002087!6.22e-10!119;CL:0000080!1.92e-09!6;CL:0000738!5.72e-09!140 | |ontology_enrichment_celltype=CL:0000084!9.94e-28!25;CL:0000827!9.94e-28!25;CL:0000542!9.55e-25!53;CL:0000051!9.55e-25!53;CL:0000838!9.82e-24!52;CL:0000791!1.29e-22!18;CL:0000789!1.29e-22!18;CL:0002420!1.29e-22!18;CL:0002419!1.29e-22!18;CL:0000790!1.29e-22!18;CL:0000625!4.94e-12!11;CL:0000624!4.91e-11!6;CL:0002087!6.22e-10!119;CL:0000080!1.92e-09!6;CL:0000738!5.72e-09!140 | ||
|ontology_enrichment_celltype_v019=CL:0000084;5.89e-40;25!CL:0000791;2.53e-31;18!CL:0000789;2.53e-31;18!CL:0002419;2.53e-31;18!CL:0000624;4.74e-18;6!CL:0000898;2.10e-13;3!CL:0000625;4.01e-13;11!CL:0000542;6.86e-13;53!CL:0000815;1.12e-09;2!CL:0000792;1.12e-09;2!CL:0002677;1.12e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,4.97e-40,25;CL:0000827,4.97e-40,25;CL:0000791,3.13e-31,18;CL:0000789,3.13e-31,18;CL:0002420,3.13e-31,18;CL:0002419,3.13e-31,18;CL:0000790,3.13e-31,18;CL:0000838,2.85e-22,52;CL:0000542,9.03e-22,53;CL:0000051,9.03e-22,53;CL:0000624,5.02e-18,6;CL:0000898,2.06e-13,3;CL:0000625,3.84e-13,11;CL:0000815,8.08e-10,2;CL:0000792,8.08e-10,2;CL:0002677,8.08e-10,2;CL:0000893,6.86e-09,2;CL:0002489,6.86e-09,2;CL:0000809,6.86e-09,2;CL:0000808,6.86e-09,2;CL:0000894,6.86e-09,2;CL:0000806,6.86e-09,2;CL:0000807,6.86e-09,2;CL:0000805,6.86e-09,2;CL:0002425,6.86e-09,2;CL:0002087,8.45e-09,115;CL:0000738,8.22e-08,136;CL:0002031,2.85e-07,120 | |||
|ontology_enrichment_development_v019=CL:0000790;2.53e-31;18!CL:0000051;6.86e-13;53!CL:0002425;3.65e-09;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!7.81e-17!15;UBERON:0000179!7.81e-17!15;UBERON:0000463!7.81e-17!15;UBERON:0004177!1.19e-08!7;UBERON:0002370!5.44e-08!4;UBERON:0005058!5.44e-08!4;UBERON:0009113!5.44e-08!4;UBERON:0003295!5.44e-08!4;UBERON:0005562!5.44e-08!4;UBERON:0003351!2.07e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;6.33e-10;2!UBERON:0005058;6.33e-10;2!UBERON:0009113;6.33e-10;2!UBERON:0000178;1.60e-09;15!UBERON:0000179;1.60e-09;15!UBERON:0000463;1.60e-09;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.92e-17,4;UBERON:0005058,4.92e-17,4;UBERON:0009113,4.92e-17,4;UBERON:0003295,4.92e-17,4;UBERON:0005562,4.92e-17,4;UBERON:0003351,2.10e-11,6;UBERON:0004177,8.65e-10,7;UBERON:0005057,8.65e-10,7;UBERON:0000178,1.73e-09,15;UBERON:0000179,1.73e-09,15;UBERON:0000463,1.73e-09,15;UBERON:0000974,7.13e-07,10;UBERON:0003408,7.13e-07,10;UBERON:0001042,7.13e-07,10;UBERON:0009145,7.13e-07,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0.436882744260345,0.527533956456907,0,0,0,0,0,0,0,0.408001382488506,0,0,0,0,0.0764134057479513,0.164201178899891,0,0.786728553697808,0.383829398097213,0,0,0,0,0,0.142169232487422,0,0,0,0.651032612147555,0,0,0,0,0,0,0,0,0,0,0,0,0.689491361473237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0.393419540227666,3.14408610199332,4.93443597598822,3.34372990781356,1.95553359980154,3.78758244587787,7.79306913631645,3.89936599098108,5.30290633454707,7.08908462667588,1.89562704635511,7.17311390463781,7.41338281091306,8.87964684859851,12.4357508003632,3.76744011455568,3.70716407905151,3.47803076516627,3.1360657141493,2.26618685395132,1.14966148080576,2.74901956386104,1.01207876807801,1.27426165729639,0.651083453856419,0,0.752875595388864,1.53583933385302,1.24930726552346,0.710331756132051,0,1.61285394579786,2.13952156626806,2.75166367377318,0,0,0,0,0,0,0,0,0,0.221729397462564,0.527008714158756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267899184852239,0.22452937262617,0.563057402416611,1.53316637465883,0,0.916008719652036,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,8.82926198829301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,1.12085143993527,0.394061520403854,2.15627574859517,1.41177339907723,0,0,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,1.50999940573032,0.960548020230999,0.606255142892519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,1.40847801266121,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,3.04468565539302,0,2.84823593587081,1.42939065274673,1.23408681925858,1.29694662238543,0.540031437238115,0.79312517629427,0,0,0,0.371606350251437,0,7.11418433484141,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.891547074219827,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.2193298195736,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0.593042257361244,0.370691816839509,0.417687798021821,0,0,0,0.547364367646998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576219191952599,0,0,0,0,0,0,0,0,0,0,1.8402114799552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0,0,0,0.992332043623902,0.790446527591777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829412415681711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0.115233987555779,0,0,0.131545547125698,0,0.556157009460346,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.452888530700021,0.0771741581079447,0,0.940634592723046,0,0,0,0,0,0,0.469919589899268,0.257831551894309,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0.426467963801962,0.23806443146374,5.49005733606052,2.11054028605917,0,0,0,0,0,0.471464371102113,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,1.20764276154616,0 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| ||
|short_description=p@chr7:142499841..142499860,- | |short_description=p@chr7:142499841..142499860,- | ||
}} | }} |
Latest revision as of 06:59, 31 July 2015
Short description: | p@chr7:142499841..142499860, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:142499841..142499860, - |
Coexpression cluster: | C1420_CD4_acute_Hodgkin_chronic_thymus_CD8_Whole |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 4.97e-40 | 25 |
pro-T cell | 4.97e-40 | 25 |
mature alpha-beta T cell | 3.13e-31 | 18 |
alpha-beta T cell | 3.13e-31 | 18 |
immature T cell | 3.13e-31 | 18 |
mature T cell | 3.13e-31 | 18 |
immature alpha-beta T cell | 3.13e-31 | 18 |
lymphoid lineage restricted progenitor cell | 2.85e-22 | 52 |
lymphocyte | 9.03e-22 | 53 |
common lymphoid progenitor | 9.03e-22 | 53 |
CD4-positive, alpha-beta T cell | 5.02e-18 | 6 |
naive T cell | 2.06e-13 | 3 |
CD8-positive, alpha-beta T cell | 3.84e-13 | 11 |
regulatory T cell | 8.08e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 8.08e-10 | 2 |
naive regulatory T cell | 8.08e-10 | 2 |
thymocyte | 6.86e-09 | 2 |
double negative thymocyte | 6.86e-09 | 2 |
double-positive, alpha-beta thymocyte | 6.86e-09 | 2 |
DN4 thymocyte | 6.86e-09 | 2 |
DN1 thymic pro-T cell | 6.86e-09 | 2 |
DN2 thymocyte | 6.86e-09 | 2 |
DN3 thymocyte | 6.86e-09 | 2 |
immature single positive thymocyte | 6.86e-09 | 2 |
early T lineage precursor | 6.86e-09 | 2 |
nongranular leukocyte | 8.45e-09 | 115 |
leukocyte | 8.22e-08 | 136 |
hematopoietic lineage restricted progenitor cell | 2.85e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
thymus | 4.92e-17 | 4 |
hemolymphoid system gland | 4.92e-17 | 4 |
thymic region | 4.92e-17 | 4 |
pharyngeal gland | 4.92e-17 | 4 |
thymus primordium | 4.92e-17 | 4 |
pharyngeal epithelium | 2.10e-11 | 6 |
hemopoietic organ | 8.65e-10 | 7 |
immune organ | 8.65e-10 | 7 |
blood | 1.73e-09 | 15 |
haemolymphatic fluid | 1.73e-09 | 15 |
organism substance | 1.73e-09 | 15 |
neck | 7.13e-07 | 10 |
gland of gut | 7.13e-07 | 10 |
chordate pharynx | 7.13e-07 | 10 |
pharyngeal region of foregut | 7.13e-07 | 10 |