FFCP PHASE1:Hg19::chr2:176981526..176981543,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3236 | |EntrezGene=3236 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5133 | |HGNC=5133 | ||
|TSSclassifier=strong | |||
|UniProt=P28358 | |UniProt=P28358 | ||
|association_with_transcript=34bp_to_NM_002148,uc002ukj.2_5end | |association_with_transcript=34bp_to_NM_002148,uc002ukj.2_5end | ||
|cluster_id=chr2:176981526..176981543,+ | |||
|coexpression_cluster_id=C2672 | |||
|description=CAGE_peak_3_at_HOXD10_5end | |description=CAGE_peak_3_at_HOXD10_5end | ||
|id=chr2:176981526..176981543,+ | |id=chr2:176981526..176981543,+ | ||
|ontology_enrichment_celltype=CL:0005020!6.66e-07!6;CL:0002138!6.66e-07!6;CL:0005022!6.66e-07!6 | |ontology_enrichment_celltype=CL:0005020!6.66e-07!6;CL:0002138!6.66e-07!6;CL:0005022!6.66e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0002138;2.35e-09;6!CL:0002553;1.05e-07;1!CL:0000511;5.34e-07;1!CL:0002625;5.34e-07;1!CL:0000216;5.34e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,2.19e-09,6;CL:0002138,2.19e-09,6;CL:0005022,2.19e-09,6;CL:0002553,1.06e-07,1;CL:0000511,4.34e-07,1;CL:0002625,4.34e-07,1;CL:0000216,4.34e-07,1 | |||
|ontology_enrichment_development_v019=UBERON:0005795;1.00e-14;10!CL:0005022;2.35e-09;6 | |||
|ontology_enrichment_disease=DOID:0060084!2.51e-08!3;DOID:127!2.51e-08!3 | |ontology_enrichment_disease=DOID:0060084!2.51e-08!3;DOID:127!2.51e-08!3 | ||
|ontology_enrichment_disease_v019=DOID:0060084;7.06e-18;3!DOID:127;7.06e-18;3!DOID:0060072;1.49e-13;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,6.47e-18,3;DOID:127,6.47e-18,3;DOID:0060072,1.40e-13,4 | |||
|ontology_enrichment_uberon=UBERON:0004876!9.17e-12!20;UBERON:0003133!4.67e-11!48;UBERON:0000489!1.95e-09!32;UBERON:0003135!2.64e-09!11;UBERON:0005156!2.84e-09!59;UBERON:0000990!2.84e-09!59;UBERON:0003886!3.74e-09!63;UBERON:0000080!9.20e-09!18;UBERON:0002120!9.20e-09!18;UBERON:0004875!9.20e-09!18;UBERON:0005721!9.20e-09!18;UBERON:0005754!9.20e-09!18;UBERON:0007297!9.20e-09!18;UBERON:0000991!1.07e-08!21;UBERON:0009196!1.07e-08!21;UBERON:0009117!1.07e-08!21;UBERON:0005564!1.07e-08!21;UBERON:0002113!2.80e-08!27;UBERON:0003918!2.80e-08!27;UBERON:0005095!2.80e-08!27;UBERON:0007687!2.80e-08!27;UBERON:0004176!3.29e-08!22;UBERON:0002553!9.11e-08!70;UBERON:0003064!1.68e-07!37;UBERON:0006555!1.89e-07!17;UBERON:0005103!1.89e-07!17;UBERON:0000083!1.89e-07!17;UBERON:0009201!1.89e-07!17;UBERON:0004819!1.89e-07!17;UBERON:0006553!1.89e-07!17;UBERON:0003074!1.89e-07!17;UBERON:0003060!1.89e-07!17;UBERON:0003887!2.90e-07!21;UBERON:0000464!3.71e-07!104;UBERON:0000058!5.73e-07!26;UBERON:0000473!6.99e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000995;2.24e-08;17!UBERON:0003975;6.74e-08;18!UBERON:0005795;9.90e-08;1!UBERON:0006834;1.79e-07;1!UBERON:0001473;3.97e-07;8!UBERON:0004536;3.97e-07;8!UBERON:0006558;3.97e-07;8!UBERON:0001136;5.34e-07;1!UBERON:0001343;5.34e-07;1!UBERON:0004910;5.34e-07;1!UBERON:0004813;5.34e-07;1!UBERON:0004175;9.80e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005795,3.83e-09,22;UBERON:0006834,1.97e-07,1;UBERON:0004871,2.61e-07,8;UBERON:0001473,3.76e-07,8;UBERON:0004536,3.76e-07,8;UBERON:0006558,3.76e-07,8;UBERON:0001136,4.34e-07,1;UBERON:0001343,4.34e-07,1;UBERON:0004910,4.34e-07,1;UBERON:0005154,4.34e-07,1;UBERON:0005295,4.34e-07,1;UBERON:0004813,4.34e-07,1;UBERON:0005297,4.34e-07,1;UBERON:0005294,4.34e-07,1;UBERON:0010141,4.34e-07,1;UBERON:0005891,4.34e-07,1;UBERON:0000995,9.74e-07,21 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,1.96468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0,1.33888245105868,0,5.32190474002959,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25572744982203,0.85422955527427,0,0,0,0,0,0,0,0.252433774244115,0.184099797284599,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29929802984966,0,5.70762456703795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.25500986535793,5.2003718455683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0,0,0,0,0,0,6.62081419400982,0,0,0.664225598535437,2.21243002250044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451199612907412,0.308061348417659,0,0,0.527758144464379,0,0,0.215915916102139,0,0.812839312631559,1.00337954770971,0,0,1.11937377361089,0,0,0,0,0,0.103041011647722,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633322905892992,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.19924798825107,0.552567831062295,0,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,3.62499787717397,0,0,5.67330436243047,0,0,0,0,0,0,0,0,0,0,0,1.30815439456455,0,0,0,0,0.31900115973192,2.38153742844842,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,4.27721101453538,0,0,0,0,0.802577647298789,0,0,0,0,0,1.20990716048664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.873633341210151,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60058834087354,8.70746163040969,0,0,0,0.714695326373367,0,0,1.08599920350743,1.72844298240254,2.61269888087527,0,0,0.340776043570843,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,2.60872530905867,0,0,0,0,0.214821114084977,0.464033759878494,0.796191777397232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.622077260032973,0,3.45039396469382,0.629063767423586,0,0,4.46407332213534,0.495743057036009,0,0,0,12.8091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.676892955143315,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.266107110487916,0,0,0,0,0,0,0.470958557103084,0,0,2.73947616152849,0,0,0,0,0,0.173858272302579,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0.971421986118279,0,0,0,0,0,1.50962843566674,0,0,2.82190377816914,0,0,0,0,2.113278637917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.833565680400634,0.267964130156178,0,0,0.426467963801962,0,0.0645889098360061,0,0,0,0,0.217716747896961,0,0.202056159043763,0,0,0,0,0,0,0,4.03396765803459,14.6482624193666,0,0.402547587182052,0 | ||
|short_description=p3@HOXD10 | |short_description=p3@HOXD10 | ||
}} | }} |
Latest revision as of 08:56, 18 September 2015
Short description: | p3@HOXD10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HOXD10_5end |
Coexpression cluster: | C2672_uterus_kidney_nonsmall_smallcell_breast_Osteoblast_Endothelial |
Association with transcript: | 34bp_to_NM_002148, uc002ukj.2_5end |
EntrezGene: | HOXD10 |
HGNC: | 5133 |
UniProt: | P28358 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 2.19e-09 | 6 |
endothelial cell of lymphatic vessel | 2.19e-09 | 6 |
vascular lymphangioblast | 2.19e-09 | 6 |
lung fibroblast | 1.06e-07 | 1 |
androgen binding protein secreting cell | 4.34e-07 | 1 |
seminiferous tubule epithelial cell | 4.34e-07 | 1 |
Sertoli cell | 4.34e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
embryonic uterus | 3.83e-09 | 22 |
uterus or analog | 1.97e-07 | 1 |
somatic layer of lateral plate mesoderm | 2.61e-07 | 8 |
lymphatic vessel | 3.76e-07 | 8 |
lymph vasculature | 3.76e-07 | 8 |
lymphatic part of lymphoid system | 3.76e-07 | 8 |
mesothelium | 4.34e-07 | 1 |
seminiferous tubule of testis | 4.34e-07 | 1 |
epithelium of male gonad | 4.34e-07 | 1 |
epithelial cord | 4.34e-07 | 1 |
sex cord | 4.34e-07 | 1 |
seminiferous tubule epithelium | 4.34e-07 | 1 |
testis sex cord | 4.34e-07 | 1 |
genital ridge | 4.34e-07 | 1 |
primitive sex cord of indifferent gonad | 4.34e-07 | 1 |
coelomic epithelium | 4.34e-07 | 1 |
uterus | 9.74e-07 | 21 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 6.47e-18 | 3 |
leiomyoma | 6.47e-18 | 3 |
benign neoplasm | 1.40e-13 | 4 |