FFCP PHASE1:Hg19::chr6:10556088..10556099,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2651 | |EntrezGene=2651 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4204 | |HGNC=4204 | ||
|TSSclassifier=strong | |||
|UniProt=Q06430,Q8NFS9 | |UniProt=Q06430,Q8NFS9 | ||
|association_with_transcript=139bp_to_NM_001491,uc003mzd.2_5end | |association_with_transcript=139bp_to_NM_001491,uc003mzd.2_5end | ||
|cluster_id=chr6:10556088..10556099,+ | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_21_at_GCNT2_5end | |description=CAGE_peak_21_at_GCNT2_5end | ||
|id=chr6:10556088..10556099,+ | |id=chr6:10556088..10556099,+ | ||
|ontology_enrichment_celltype=CL:0002322!9.49e-22!5;CL:0002139!7.98e-12!24;CL:0000115!1.53e-11!35;CL:0000039!5.89e-10!7;CL:0000586!5.89e-10!7;CL:0000071!6.57e-10!18;CL:0002546!6.57e-10!18;CL:0002078!9.89e-09!44;CL:0000540!4.59e-07!6;CL:0000031!4.59e-07!6;CL:0000404!4.59e-07!6;CL:0000148!7.28e-07!10;CL:0000541!7.28e-07!10 | |ontology_enrichment_celltype=CL:0002322!9.49e-22!5;CL:0002139!7.98e-12!24;CL:0000115!1.53e-11!35;CL:0000039!5.89e-10!7;CL:0000586!5.89e-10!7;CL:0000071!6.57e-10!18;CL:0002546!6.57e-10!18;CL:0002078!9.89e-09!44;CL:0000540!4.59e-07!6;CL:0000031!4.59e-07!6;CL:0000404!4.59e-07!6;CL:0000148!7.28e-07!10;CL:0000541!7.28e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0002322;5.57e-76;5!CL:0002321;1.66e-25;15!CL:0000540;1.29e-23;6!CL:0000404;1.29e-23;6!CL:0000148;1.77e-14;10!CL:0000147;1.62e-10;14!CL:0000039;7.99e-10;7!CL:0000586;7.99e-10;7!CL:0002262;7.21e-09;2!CL:1000398;7.21e-09;2!CL:0000710;1.58e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.50e-76,5;CL:0000540,1.24e-23,6;CL:0000031,1.24e-23,6;CL:0000404,1.24e-23,6;CL:0000047,6.63e-18,8;CL:0000148,1.54e-14,10;CL:0000541,1.54e-14,10;CL:0000147,1.47e-10,14;CL:0000039,8.35e-10,7;CL:0000586,8.35e-10,7;CL:0000133,7.32e-09,59;CL:0002262,7.49e-09,2;CL:1000398,7.49e-09,2;CL:0000710,1.48e-07,20;CL:0000221,2.98e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.29e-23;6!UBERON:0009117;1.90e-14;10!UBERON:0005564;1.90e-14;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3095;1.98e-11;22!DOID:2994;1.98e-11;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,2.15e-11,22;DOID:2994,2.15e-11,22 | |||
|ontology_enrichment_uberon=UBERON:0000473!8.56e-13!8;UBERON:0001986!6.57e-10!18;UBERON:0004638!6.57e-10!18;UBERON:0004852!6.57e-10!18;UBERON:0003135!3.25e-09!11;UBERON:0000487!6.24e-08!22;UBERON:0001871!1.19e-07!7;UBERON:0006914!7.26e-07!25 | |ontology_enrichment_uberon=UBERON:0000473!8.56e-13!8;UBERON:0001986!6.57e-10!18;UBERON:0004638!6.57e-10!18;UBERON:0004852!6.57e-10!18;UBERON:0003135!3.25e-09!11;UBERON:0000487!6.24e-08!22;UBERON:0001871!1.19e-07!7;UBERON:0006914!7.26e-07!25 | ||
|ontology_enrichment_uberon_v019=UBERON:0001281;7.21e-09;2!UBERON:0003497;7.21e-09;2!UBERON:0003909;7.21e-09;2!UBERON:0003835;7.21e-09;2!UBERON:0000473;1.04e-08;8!UBERON:0000922;1.37e-08;49!UBERON:0000991;3.53e-07;21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001281,7.49e-09,2;UBERON:0003497,7.49e-09,2;UBERON:0003909,7.49e-09,2;UBERON:0003835,7.49e-09,2;UBERON:0000473,1.09e-08,8;UBERON:0000991,3.57e-07,21;UBERON:0009196,3.57e-07,21;UBERON:0009117,3.57e-07,21;UBERON:0005564,3.57e-07,21;UBERON:0004176,7.18e-07,22 | |||
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| ||
|short_description=p21@GCNT2 | |short_description=p21@GCNT2 | ||
}} | }} |
Latest revision as of 14:01, 19 September 2015
Short description: | p21@GCNT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_21_at_GCNT2_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 139bp_to_NM_001491, uc003mzd.2_5end |
EntrezGene: | GCNT2 |
HGNC: | 4204 |
UniProt: | Q06430Q8NFS9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.50e-76 | 5 |
neuron | 1.24e-23 | 6 |
neuroblast | 1.24e-23 | 6 |
electrically signaling cell | 1.24e-23 | 6 |
neuronal stem cell | 6.63e-18 | 8 |
melanocyte | 1.54e-14 | 10 |
melanoblast | 1.54e-14 | 10 |
pigment cell | 1.47e-10 | 14 |
germ line cell | 8.35e-10 | 7 |
germ cell | 8.35e-10 | 7 |
neurectodermal cell | 7.32e-09 | 59 |
endothelial cell of sinusoid | 7.49e-09 | 2 |
endothelial cell of hepatic sinusoid | 7.49e-09 | 2 |
neurecto-epithelial cell | 1.48e-07 | 20 |
ectodermal cell | 2.98e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
hepatic sinusoid | 7.49e-09 | 2 |
abdomen blood vessel | 7.49e-09 | 2 |
sinusoid | 7.49e-09 | 2 |
abdominal segment blood vessel | 7.49e-09 | 2 |
testis | 1.09e-08 | 8 |
gonad | 3.57e-07 | 21 |
indifferent external genitalia | 3.57e-07 | 21 |
indifferent gonad | 3.57e-07 | 21 |
gonad primordium | 3.57e-07 | 21 |
external genitalia | 7.18e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.15e-11 | 22 |
germ cell cancer | 2.15e-11 | 22 |