FFCP PHASE1:Hg19::chr4:147867025..147867049,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83894 | |EntrezGene=83894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29936 | |HGNC=29936 | ||
|TSSclassifier=strong | |||
|UniProt=Q8NA56,D6RJF6,E7EQ14,Q8TC83,A8MUB8 | |UniProt=Q8NA56,D6RJF6,E7EQ14,Q8TC83,A8MUB8 | ||
|association_with_transcript=0bp_to_ENST00000325106,ENST00000502319,ENST00000504425,NM_031956,uc003ikw.3,uc003ikx.3,uc010ipc.2,uc010ipd.1_5end | |association_with_transcript=0bp_to_ENST00000325106,ENST00000502319,ENST00000504425,NM_031956,uc003ikw.3,uc003ikx.3,uc010ipc.2,uc010ipd.1_5end | ||
|cluster_id=chr4:147867025..147867049,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_3_at_TTC29_5end | |description=CAGE_peak_3_at_TTC29_5end | ||
|id=chr4:147867025..147867049,- | |id=chr4:147867025..147867049,- | ||
|ontology_enrichment_celltype=CL:0002274!1.27e-08!5;CL:0000457!1.27e-08!5;CL:0002191!1.27e-08!5;CL:0000097!1.27e-08!5;CL:0000831!1.27e-08!5;CL:0002028!1.27e-08!5 | |ontology_enrichment_celltype=CL:0002274!1.27e-08!5;CL:0000457!1.27e-08!5;CL:0002191!1.27e-08!5;CL:0000097!1.27e-08!5;CL:0000831!1.27e-08!5;CL:0002028!1.27e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000097;1.29e-20;5!CL:0000228;2.91e-12;1!CL:0002372;2.91e-12;1!CL:0000163;9.96e-12;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,9.55e-21,5;CL:0002028,9.55e-21,5;CL:0000228,2.20e-12,1;CL:0002372,2.20e-12,1;CL:0000163,8.45e-12,9 | |||
|ontology_enrichment_development_v019=UBERON:0007297;9.27e-07;2 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:8552;2.91e-12;1!DOID:3910;4.82e-07;2!DOID:4468;6.80e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:8552,2.75e-12,1;DOID:3910,4.83e-07,2;DOID:4468,6.80e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!7.72e-18!57;UBERON:0005068!7.72e-18!57;UBERON:0006241!7.72e-18!57;UBERON:0007135!7.72e-18!57;UBERON:0002780!3.24e-16!41;UBERON:0001890!3.24e-16!41;UBERON:0006240!3.24e-16!41;UBERON:0003080!1.21e-15!42;UBERON:0002616!1.37e-15!59;UBERON:0000955!1.50e-13!69;UBERON:0006238!1.50e-13!69;UBERON:0003075!2.24e-13!86;UBERON:0007284!2.24e-13!86;UBERON:0002346!3.99e-13!90;UBERON:0003056!6.25e-13!61;UBERON:0002020!8.42e-13!34;UBERON:0003528!8.42e-13!34;UBERON:0002619!1.04e-12!22;UBERON:0001893!1.05e-12!34;UBERON:0001869!1.45e-12!32;UBERON:0000073!5.17e-12!94;UBERON:0001016!5.17e-12!94;UBERON:0002791!7.31e-12!33;UBERON:0001017!1.07e-11!82;UBERON:0005743!1.62e-11!86;UBERON:0007023!2.18e-11!115;UBERON:0000956!1.11e-10!25;UBERON:0000203!1.11e-10!25;UBERON:0001950!1.41e-10!20;UBERON:0000025!1.33e-07!194;UBERON:0000033!1.36e-07!123;UBERON:0000153!2.12e-07!129;UBERON:0007811!2.12e-07!129;UBERON:0000119!2.39e-07!312;UBERON:0000483!7.16e-07!309 | |ontology_enrichment_uberon=UBERON:0001049!7.72e-18!57;UBERON:0005068!7.72e-18!57;UBERON:0006241!7.72e-18!57;UBERON:0007135!7.72e-18!57;UBERON:0002780!3.24e-16!41;UBERON:0001890!3.24e-16!41;UBERON:0006240!3.24e-16!41;UBERON:0003080!1.21e-15!42;UBERON:0002616!1.37e-15!59;UBERON:0000955!1.50e-13!69;UBERON:0006238!1.50e-13!69;UBERON:0003075!2.24e-13!86;UBERON:0007284!2.24e-13!86;UBERON:0002346!3.99e-13!90;UBERON:0003056!6.25e-13!61;UBERON:0002020!8.42e-13!34;UBERON:0003528!8.42e-13!34;UBERON:0002619!1.04e-12!22;UBERON:0001893!1.05e-12!34;UBERON:0001869!1.45e-12!32;UBERON:0000073!5.17e-12!94;UBERON:0001016!5.17e-12!94;UBERON:0002791!7.31e-12!33;UBERON:0001017!1.07e-11!82;UBERON:0005743!1.62e-11!86;UBERON:0007023!2.18e-11!115;UBERON:0000956!1.11e-10!25;UBERON:0000203!1.11e-10!25;UBERON:0001950!1.41e-10!20;UBERON:0000025!1.33e-07!194;UBERON:0000033!1.36e-07!123;UBERON:0000153!2.12e-07!129;UBERON:0007811!2.12e-07!129;UBERON:0000119!2.39e-07!312;UBERON:0000483!7.16e-07!309 | ||
|ontology_enrichment_uberon_v019=UBERON:0001301;2.91e-12;1!UBERON:0002171;2.91e-12;1!UBERON:0006518;2.91e-12;1!UBERON:0008949;2.91e-12;1!UBERON:0000101;2.91e-12;1!UBERON:0002167;2.91e-12;1!UBERON:0003135;8.22e-10;11!UBERON:0004903;4.82e-07;2!UBERON:0002173;4.82e-07;2!UBERON:0002186;4.82e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,3.08e-12,1;UBERON:0006518,3.08e-12,1;UBERON:0008949,3.08e-12,1;UBERON:0000101,3.08e-12,1;UBERON:0002167,3.08e-12,1;UBERON:0001301,3.45e-12,1;UBERON:0003135,8.60e-10,11;UBERON:0004903,4.83e-07,2;UBERON:0002173,4.83e-07,2;UBERON:0002186,4.83e-07,2 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,4.12584087817795,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0.71153252537342,0.33472061276467,0,0,0,0,0.81014194788176,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0.624320153660641,0,0.149448680551801,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0.252320850875628,0.72995471815166,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0.492663237895943,0.792435906119034,3.7319060797339,3.89123874225796,1.76739406796932,0,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,0,0,0,0.266422179016099,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0.300946099727719,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0.116210378459959,0.120859449591622,0,0,0.114814448164607,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0.340187410553031,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.676695028044854,0.154048617114644,0,0,0,0.290033387828457,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,5.01268954180134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6385350467078,0,0,0,0,0.562677665642051,0.111308705022906,0,0.211125408127993,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0.482385754501632,0,0,0,0.438770794307945,0,0,0,0.341826167541004,0,0,0,0,0,0,0,0.156980256395025,1.32969345520125,0,0,0,0,0.476809736941136,2.74297483886435,0.326465616318295,0,0,0,0,1.22206028986725,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22308667769421,0.171986032471617,0,0,0,0,0.176512253383001,0,0.137041924646751,0.794858446811959,0.126621591911757,0.195551382734803,0.240476460754601,0,0,0,0,1.37275998289572,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0.0984274815147488,0,0.795229689809303,0.408610218334727,0,0,0,0.899895566206002,0,0.303747783290123,0,0,0.104909176269996,0,0,0,0,0,0,0.542999601753713,0,0.653174720218818,0,0,0.170388021785422,0,0,0,0.517131825446202,0.13223260174269,0,0,0.106787412567695,1.10043013569766,1.24271716604159,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0.1251909307065,0.573409195690071,1.44207766997908,0.372578417648301,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,1.04397716786085,0,0.231522474323834,0,0,0,0,0.176689145945881,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0.172214979660816,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0.558644917973244,0,0,0,0,0,0.256916900385838,0,0.638535436228605,0.205116364240755,0.252071696221718,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0.781078098613847,0.206686796501184,0.126831620387814,0,0,0,0.175871244359621,0,0.535701835878287,0.336283722218824,0,0,0,0,0,0.40781839786099,0.526182188502793,0,0,0,0.471346769748006,0,0,0,0,0.214429632529969,0,0.116241425368125,0,0,0,0,0,0,0.473328002922261,0.426067023795788,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0.0644578879735772,0,0,0.352894871715692,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0.218531143927391,0,0,0,0,0,12.8823786971007,17.4176684601516,0.829169439458779,0.310298987585686,0,0.952257725854961,0,0,0,0.0636471582781649,0,0,0,0,0.78894425931944,0.665320713092027,0,0.106727345877715,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0.487932798790507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,4.12584087817795,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0.71153252537342,0.33472061276467,0,0,0,0,0.81014194788176,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,0,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0.624320153660641,0,0.149448680551801,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207322110030741,0.252320850875628,0.72995471815166,0,0.643240938192885,0,0,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0.100528972411631,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0.492663237895943,0.792435906119034,3.7319060797339,3.89123874225796,1.76739406796932,0,0,0,0,0,0,0,0.112131084345361,0,0.1466765716419,0,0,0,0,0,0,0,0.266422179016099,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,1.42636905040718,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117141414992713,0.300946099727719,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164254312027618,0,0.116210378459959,0.120859449591622,0,0,0.114814448164607,0,0.131124414959424,0,0,0,0,0.105551628892876,0,0.340187410553031,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.676695028044854,0.154048617114644,0,0,0,0.290033387828457,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0.532306030317022,0,0,0.143124886741991,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0.379473173765715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,5.01268954180134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.6385350467078,0,0,0,0,0.562677665642051,0.111308705022906,0,0.211125408127993,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.463840490809256,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0.482385754501632,0,0,0,0.438770794307945,0,0,0,0.341826167541004,0,0,0,0,0,0,0,0.156980256395025,1.32969345520125,0,0,0,0,0.476809736941136,2.74297483886435,0.326465616318295,0,0,0,0,1.22206028986725,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0.394584402849391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22308667769421,0.171986032471617,0,0,0,0,0.176512253383001,0,0.137041924646751,0.794858446811959,0.126621591911757,0.195551382734803,0.240476460754601,0,0,0,0,1.37275998289572,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0.0984274815147488,0,0.795229689809303,0.408610218334727,0,0,0,0.899895566206002,0,0.303747783290123,0,0,0.104909176269996,0,0,0,0,0,0,0.542999601753713,0,0.653174720218818,0,0,0.170388021785422,0,0,0,0.517131825446202,0.13223260174269,0,0,0.106787412567695,1.10043013569766,1.24271716604159,0,0,0,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0.1251909307065,0.573409195690071,1.44207766997908,0.372578417648301,0,0,0,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0,0,0,0,0,1.04397716786085,0,0.231522474323834,0,0,0,0,0.176689145945881,0,0,0,0,0,0.414775308455192,0,0,0,0,0,0,0,0,0.172214979660816,0,0.368211900503681,0,0,0,0,0,0,0,0,0,0.558644917973244,0,0,0,0,0,0.256916900385838,0,0.638535436228605,0.205116364240755,0.252071696221718,0.207471757392654,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270150338473579,0.781078098613847,0.206686796501184,0.126831620387814,0,0,0,0.175871244359621,0,0.535701835878287,0.336283722218824,0,0,0,0,0,0.40781839786099,0.526182188502793,0,0,0,0.471346769748006,0,0,0,0,0.214429632529969,0,0.116241425368125,0,0,0,0,0,0,0.473328002922261,0.426067023795788,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0,0,0.0644578879735772,0,0,0.352894871715692,0,0,0,0,0,0.135982980381829,0,0,0,0,0,0,0.218531143927391,0,0,0,0,0,12.8823786971007,17.4176684601516,0.829169439458779,0.310298987585686,0,0.952257725854961,0,0,0,0.0636471582781649,0,0,0,0,0.78894425931944,0.665320713092027,0,0.106727345877715,0,0,0,0,0,0,0,0 | ||
|short_description=p3@TTC29 | |short_description=p3@TTC29 | ||
}} | }} |
Latest revision as of 23:56, 15 September 2015
Short description: | p3@TTC29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_TTC29_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000325106, ENST00000502319, ENST00000504425, NM_031956, uc003ikw.3, uc003ikx.3, uc010ipc.2, uc010ipd.1_5end |
EntrezGene: | TTC29 |
HGNC: | 29936 |
UniProt: | Q8NA56D6RJF6E7EQ14Q8TC83A8MUB8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 9.55e-21 | 5 |
basophil mast progenitor cell | 9.55e-21 | 5 |
multinucleate cell | 2.20e-12 | 1 |
myotube | 2.20e-12 | 1 |
endocrine cell | 8.45e-12 | 9 |
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 3.08e-12 | 1 |
right lung lobe | 3.08e-12 | 1 |
lower lobe of lung | 3.08e-12 | 1 |
lobe of lung | 3.08e-12 | 1 |
right lung | 3.08e-12 | 1 |
epididymis | 3.45e-12 | 1 |
male reproductive organ | 8.60e-10 | 11 |
bronchoalveolar duct junction | 4.83e-07 | 2 |
alveolar duct | 4.83e-07 | 2 |
bronchiole | 4.83e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
chronic myeloid leukemia | 2.75e-12 | 1 |
lung adenocarcinoma | 4.83e-07 | 2 |
clear cell adenocarcinoma | 6.80e-07 | 2 |