FFCP PHASE1:Hg19::chr9:6716478..6716551,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23081 | |EntrezGene=23081 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=17071 | |HGNC=17071 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000452643,uc003zkd.2,uc003zke.2_5end | |association_with_transcript=0bp_to_ENST00000452643,uc003zkd.2,uc003zke.2_5end | ||
|cluster_id=chr9:6716478..6716551,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_10_at_KDM4C_5end | |description=CAGE_peak_10_at_KDM4C_5end | ||
|id=chr9:6716478..6716551,+ | |id=chr9:6716478..6716551,+ | ||
|ontology_enrichment_celltype=CL:0000838!2.04e-11!52;CL:0000542!4.93e-11!53;CL:0000051!4.93e-11!53;CL:0000945!3.92e-07!24;CL:0000826!3.92e-07!24;CL:0000084!6.38e-07!25;CL:0000827!6.38e-07!25 | |ontology_enrichment_celltype=CL:0000838!2.04e-11!52;CL:0000542!4.93e-11!53;CL:0000051!4.93e-11!53;CL:0000945!3.92e-07!24;CL:0000826!3.92e-07!24;CL:0000084!6.38e-07!25;CL:0000827!6.38e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.81e-08;12!CL:0000945;2.10e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000817,4.56e-10,3;CL:0000182,1.18e-08,12;CL:0000945,1.98e-08,24;CL:0000826,1.98e-08,24;CL:0000838,2.83e-08,52;CL:0000542,4.65e-08,53;CL:0000051,4.65e-08,53;CL:0000785,2.30e-07,2;CL:0000955,2.30e-07,2;CL:0000818,2.30e-07,2;CL:0000954,2.30e-07,2;CL:0000816,2.30e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.96e-09;11!UBERON:0009497;1.55e-07;13!CL:0000954;2.16e-07;2 | |||
|ontology_enrichment_disease=DOID:305!4.13e-08!106 | |ontology_enrichment_disease=DOID:305!4.13e-08!106 | ||
|ontology_enrichment_disease_v019=DOID:4074;7.08e-07;2!DOID:4905;7.08e-07;2!DOID:3498;7.08e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0050686,3.40e-07,137;DOID:4074,6.49e-07,2;DOID:4905,6.49e-07,2;DOID:3498,6.49e-07,2;DOID:162,9.47e-07,235 | |||
|ontology_enrichment_uberon=UBERON:0009497!1.44e-07!25;UBERON:0000015!1.44e-07!25;UBERON:0002423!1.44e-07!25;UBERON:0006235!1.44e-07!25;UBERON:0004161!1.44e-07!25;UBERON:0004921!1.96e-07!129;UBERON:0004185!1.96e-07!129;UBERON:0005057!3.26e-07!26;UBERON:0007023!8.82e-07!115;UBERON:0009854!8.87e-07!23 | |ontology_enrichment_uberon=UBERON:0009497!1.44e-07!25;UBERON:0000015!1.44e-07!25;UBERON:0002423!1.44e-07!25;UBERON:0006235!1.44e-07!25;UBERON:0004161!1.44e-07!25;UBERON:0004921!1.96e-07!129;UBERON:0004185!1.96e-07!129;UBERON:0005057!3.26e-07!26;UBERON:0007023!8.82e-07!115;UBERON:0009854!8.87e-07!23 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;7.04e-09;19!UBERON:0006925;7.04e-09;19!UBERON:0002423;3.32e-08;25!UBERON:0000160;2.33e-07;17!UBERON:0000949;6.88e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009854,3.22e-11,23;UBERON:0008835,1.08e-09,22;UBERON:0003894,1.08e-09,22;UBERON:0009856,1.10e-09,26;UBERON:0002107,5.11e-09,19;UBERON:0006925,5.11e-09,19;UBERON:0008836,5.11e-09,19;UBERON:0000949,2.17e-08,45;UBERON:0007499,2.54e-08,25;UBERON:0009497,2.54e-08,25;UBERON:0000015,2.54e-08,25;UBERON:0002423,2.54e-08,25;UBERON:0006235,2.54e-08,25;UBERON:0004161,2.54e-08,25;UBERON:0000160,3.06e-07,17 | |||
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| ||
|short_description=p10@KDM4C | |short_description=p10@KDM4C | ||
}} | }} |
Latest revision as of 15:12, 17 September 2015
Short description: | p10@KDM4C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_KDM4C_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000452643, uc003zkd.2, uc003zke.2_5end |
EntrezGene: | KDM4C |
HGNC: | 17071 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
precursor B cell | 4.56e-10 | 3 |
hepatocyte | 1.18e-08 | 12 |
lymphocyte of B lineage | 1.98e-08 | 24 |
pro-B cell | 1.98e-08 | 24 |
lymphoid lineage restricted progenitor cell | 2.83e-08 | 52 |
lymphocyte | 4.65e-08 | 53 |
common lymphoid progenitor | 4.65e-08 | 53 |
mature B cell | 2.30e-07 | 2 |
pre-B-II cell | 2.30e-07 | 2 |
transitional stage B cell | 2.30e-07 | 2 |
small pre-B-II cell | 2.30e-07 | 2 |
immature B cell | 2.30e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
digestive tract diverticulum | 3.22e-11 | 23 |
hepatic diverticulum | 1.08e-09 | 22 |
liver primordium | 1.08e-09 | 22 |
sac | 1.10e-09 | 26 |
liver | 5.11e-09 | 19 |
digestive gland | 5.11e-09 | 19 |
liver bud | 5.11e-09 | 19 |
endocrine system | 2.17e-08 | 45 |
epithelial sac | 2.54e-08 | 25 |
epithelium of foregut-midgut junction | 2.54e-08 | 25 |
anatomical boundary | 2.54e-08 | 25 |
hepatobiliary system | 2.54e-08 | 25 |
foregut-midgut junction | 2.54e-08 | 25 |
septum transversum | 2.54e-08 | 25 |
intestine | 3.06e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
organ system cancer | 3.40e-07 | 137 |
pancreas adenocarcinoma | 6.49e-07 | 2 |
pancreatic carcinoma | 6.49e-07 | 2 |
pancreatic ductal adenocarcinoma | 6.49e-07 | 2 |
cancer | 9.47e-07 | 235 |