FFCP PHASE1:Hg19::chr10:18580125..18580134,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr10:18580125..18580134,+ | |||
|coexpression_cluster_id=C115 | |coexpression_cluster_id=C115 | ||
|description=CAGE_peak_at_chr10:18580125..18580134,+ | |description=CAGE_peak_at_chr10:18580125..18580134,+ | ||
|id=chr10:18580125..18580134,+ | |id=chr10:18580125..18580134,+ | ||
|ontology_enrichment_celltype=CL:0000242!5.41e-28!2;CL:0000312!8.32e-12!5;CL:0000240!5.43e-10!6;CL:0000311!5.43e-10!6;CL:0000079!5.43e-10!6;CL:0000237!5.43e-10!6;CL:0000036!5.43e-10!6;CL:0000357!5.43e-10!6;CL:0000114!5.43e-10!6;CL:0002535!4.38e-08!2;CL:0000362!1.04e-07!8;CL:0000095!6.37e-07!17;CL:0000123!6.37e-07!17 | |ontology_enrichment_celltype=CL:0000242!5.41e-28!2;CL:0000312!8.32e-12!5;CL:0000240!5.43e-10!6;CL:0000311!5.43e-10!6;CL:0000079!5.43e-10!6;CL:0000237!5.43e-10!6;CL:0000036!5.43e-10!6;CL:0000357!5.43e-10!6;CL:0000114!5.43e-10!6;CL:0002535!4.38e-08!2;CL:0000362!1.04e-07!8;CL:0000095!6.37e-07!17;CL:0000123!6.37e-07!17 | ||
|ontology_enrichment_celltype_v019=CL:0000123;5.22e-79;2!CL:0000242;5.22e-79;2!CL:0000312;1.99e-32;5!CL:0000240;3.11e-27;6!CL:0000311;3.11e-27;6!CL:0000079;3.11e-27;6!CL:0000237;3.11e-27;6!CL:0002535;5.70e-21;2!CL:0000362;1.48e-18;9!CL:0002159;2.51e-12;14!CL:0000095;2.36e-09;17!CL:0002319;7.24e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,5.22e-79,2;CL:0000312,1.99e-32,5;CL:0000240,3.11e-27,6;CL:0000311,3.11e-27,6;CL:0000079,3.11e-27,6;CL:0000237,3.11e-27,6;CL:0000036,3.11e-27,6;CL:0000357,3.11e-27,6;CL:0000114,3.11e-27,6;CL:0002535,5.70e-21,2;CL:0000362,1.48e-18,9;CL:0002159,2.51e-12,14;CL:0000095,2.36e-09,17;CL:0000123,2.36e-09,17;CL:0002319,7.24e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000357;3.11e-27;6!CL:0000114;3.11e-27;6 | |||
|ontology_enrichment_disease=DOID:2355!2.75e-14!1;DOID:74!8.60e-08!2 | |ontology_enrichment_disease=DOID:2355!2.75e-14!1;DOID:74!8.60e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:4362;3.22e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,3.22e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0003296!5.16e-31!4;UBERON:0010133!5.16e-31!4;UBERON:0000007!3.60e-28!2;UBERON:0001894!4.96e-18!7;UBERON:0006222!4.96e-18!7;UBERON:0001736!1.07e-14!1;UBERON:0006298!1.07e-14!1;UBERON:0002336!3.15e-14!1;UBERON:0001018!3.15e-14!1;UBERON:0002473!3.15e-14!1;UBERON:0005340!3.15e-14!1;UBERON:0002316!3.15e-14!1;UBERON:0003544!3.15e-14!1;UBERON:0001020!3.15e-14!1;UBERON:0005970!3.15e-14!1;UBERON:0002437!3.15e-14!1;UBERON:0001044!7.76e-10!6;UBERON:0003293!7.76e-10!6;UBERON:0003294!7.76e-10!6;UBERON:0010047!7.76e-10!6;UBERON:0000167!7.76e-10!6;UBERON:0006955!4.38e-08!2;UBERON:0004801!4.38e-08!2;UBERON:0001905!5.02e-08!2;UBERON:0002757!5.02e-08!2;UBERON:0010134!5.02e-08!2;UBERON:0002784!5.02e-08!2;UBERON:0005408!5.02e-08!2;UBERON:0001899!5.02e-08!2;UBERON:0001829!5.37e-08!2;UBERON:0005162!9.19e-08!2;UBERON:0000122!9.19e-08!2 | |ontology_enrichment_uberon=UBERON:0003296!5.16e-31!4;UBERON:0010133!5.16e-31!4;UBERON:0000007!3.60e-28!2;UBERON:0001894!4.96e-18!7;UBERON:0006222!4.96e-18!7;UBERON:0001736!1.07e-14!1;UBERON:0006298!1.07e-14!1;UBERON:0002336!3.15e-14!1;UBERON:0001018!3.15e-14!1;UBERON:0002473!3.15e-14!1;UBERON:0005340!3.15e-14!1;UBERON:0002316!3.15e-14!1;UBERON:0003544!3.15e-14!1;UBERON:0001020!3.15e-14!1;UBERON:0005970!3.15e-14!1;UBERON:0002437!3.15e-14!1;UBERON:0001044!7.76e-10!6;UBERON:0003293!7.76e-10!6;UBERON:0003294!7.76e-10!6;UBERON:0010047!7.76e-10!6;UBERON:0000167!7.76e-10!6;UBERON:0006955!4.38e-08!2;UBERON:0004801!4.38e-08!2;UBERON:0001905!5.02e-08!2;UBERON:0002757!5.02e-08!2;UBERON:0010134!5.02e-08!2;UBERON:0002784!5.02e-08!2;UBERON:0005408!5.02e-08!2;UBERON:0001899!5.02e-08!2;UBERON:0001829!5.37e-08!2;UBERON:0005162!9.19e-08!2;UBERON:0000122!9.19e-08!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0000007;1.56e-79;2!UBERON:0003296;1.81e-40;4!UBERON:0010133;1.81e-40;4!UBERON:0001894;1.14e-23;7!UBERON:0006955;5.70e-21;2!UBERON:0004801;5.70e-21;2!UBERON:0001003;1.42e-11;15!UBERON:0007376;1.42e-11;15!UBERON:0000002;6.78e-08;6!UBERON:0001560;6.78e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000007,1.56e-79,2;UBERON:0003296,1.81e-40,4;UBERON:0010133,1.81e-40,4;UBERON:0001894,1.14e-23,7;UBERON:0006222,1.14e-23,7;UBERON:0006955,5.70e-21,2;UBERON:0004801,5.70e-21,2;UBERON:0001003,1.42e-11,15;UBERON:0007376,1.42e-11,15;UBERON:0007383,1.42e-11,15;UBERON:0000002,6.78e-08,6;UBERON:0001560,6.78e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.77126022639704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,4.21501415226193,1.7390523433299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672567444437648,3.03482802118316,6.37454135783633,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.77126022639704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,4.21501415226193,1.7390523433299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672567444437648,3.03482802118316,6.37454135783633,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357382720883282,0,0,0,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr10:18580125..18580134,+ | |short_description=p@chr10:18580125..18580134,+ | ||
}} | }} |
Latest revision as of 12:23, 23 July 2015
Short description: | p@chr10:18580125..18580134, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr10:18580125..18580134, + |
Coexpression cluster: | C115_pituitary_Neural_caudate_putamen_amygdala_medulla_hippocampus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 5.22e-79 | 2 |
keratinocyte | 1.99e-32 | 5 |
stratified squamous epithelial cell | 3.11e-27 | 6 |
keratin accumulating cell | 3.11e-27 | 6 |
stratified epithelial cell | 3.11e-27 | 6 |
keratinizing barrier epithelial cell | 3.11e-27 | 6 |
epithelial fate stem cell | 3.11e-27 | 6 |
stratified epithelial stem cell | 3.11e-27 | 6 |
surface ectodermal cell | 3.11e-27 | 6 |
epithelial cell of cervix | 5.70e-21 | 2 |
epidermal cell | 1.48e-18 | 9 |
general ecto-epithelial cell | 2.51e-12 | 14 |
neuron associated cell | 2.36e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 2.36e-09 | 17 |
neural cell | 7.24e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
pituitary gland | 1.56e-79 | 2 |
gland of diencephalon | 1.81e-40 | 4 |
neuroendocrine gland | 1.81e-40 | 4 |
diencephalon | 1.14e-23 | 7 |
future diencephalon | 1.14e-23 | 7 |
uterine epithelium | 5.70e-21 | 2 |
cervix epithelium | 5.70e-21 | 2 |
skin epidermis | 1.42e-11 | 15 |
outer epithelium | 1.42e-11 | 15 |
enveloping layer of ectoderm | 1.42e-11 | 15 |
uterine cervix | 6.78e-08 | 6 |
neck of organ | 6.78e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 3.22e-09 | 5 |