FFCP PHASE1:Hg19::chr17:78009662..78009681,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:78009662..78009681,-
|short_description=p1@TBC1D16
|description=CAGE_peak_1_at_TBC1D16_5end
|association_with_transcript=-15bp_to_ENST00000310924,NM_01902...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=125058 | |EntrezGene=125058 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28356 | |HGNC=28356 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TBP0,B9A6L7 | |UniProt=Q8TBP0,B9A6L7 | ||
|association_with_transcript=-15bp_to_ENST00000310924,NM_019020,uc002jxj.2_5end | |||
|cluster_id=chr17:78009662..78009681,- | |||
|description=CAGE_peak_1_at_TBC1D16_5end | |||
|id=chr17:78009662..78009681,- | |||
|ontology_enrichment_celltype=CL:0002321!7.09e-20!248;CL:0000220!1.77e-19!246;CL:0000055!5.61e-15!180;CL:0000222!1.38e-11!119;CL:0000325!1.65e-10!39;CL:0000115!9.66e-09!35;CL:0000136!1.20e-08!15;CL:0000133!1.34e-08!59;CL:0002078!3.59e-08!44;CL:0000333!7.75e-08!41;CL:0000221!2.69e-07!71;CL:0000183!3.94e-07!59;CL:0000066!4.64e-07!254;CL:0000393!6.87e-07!60;CL:0000211!6.87e-07!60;CL:0000213!8.56e-07!57;CL:0000215!8.56e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000136;7.31e-09;13!CL:0000115;9.58e-08;36 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.53e-20,250;CL:0000222,3.38e-12,121;CL:0000115,5.57e-09,36;CL:0000136,1.19e-08,15;CL:0000133,1.33e-08,59;CL:0002078,2.10e-08,45;CL:0000333,7.70e-08,41;CL:0000221,1.33e-07,72;CL:0000393,2.87e-07,61;CL:0000211,2.87e-07,61;CL:0000213,5.26e-07,58;CL:0000215,5.26e-07,58;CL:0000066,8.20e-07,253 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!1.55e-16!365;UBERON:0000119!4.03e-16!312;UBERON:0000483!6.54e-16!309;UBERON:0002100!2.41e-13!216;UBERON:0000468!8.36e-13!659;UBERON:0000481!1.33e-12!347;UBERON:0003914!7.51e-12!118;UBERON:0004111!9.18e-12!241;UBERON:0005256!3.69e-11!143;UBERON:0000922!1.67e-10!612;UBERON:0000477!1.79e-10!286;UBERON:0000025!5.49e-10!194;UBERON:0002050!2.78e-09!605;UBERON:0005423!2.78e-09!605;UBERON:0009569!3.33e-09!113;UBERON:0000923!3.84e-09!604;UBERON:0005291!3.84e-09!604;UBERON:0006598!3.84e-09!604;UBERON:0002532!3.84e-09!604;UBERON:0000490!1.07e-08!138;UBERON:0003104!4.01e-08!238;UBERON:0009142!4.01e-08!238;UBERON:0000480!5.23e-08!626;UBERON:0000467!5.29e-08!625;UBERON:0002049!1.29e-07!79;UBERON:0007798!1.29e-07!79;UBERON:0002417!4.14e-07!61;UBERON:0000916!4.14e-07!61;UBERON:0000486!6.43e-07!82;UBERON:0003103!7.88e-07!69 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,5.23e-16,309;UBERON:0000483,8.45e-16,306;UBERON:0003104,4.78e-14,160;UBERON:0009142,4.78e-14,160;UBERON:0002100,1.78e-13,199;UBERON:0003914,1.81e-11,117;UBERON:0004111,3.62e-11,240;UBERON:0005256,4.48e-11,122;UBERON:0000490,6.55e-10,148;UBERON:0000922,1.96e-09,592;UBERON:0000025,2.38e-09,192;UBERON:0009569,6.40e-09,112;UBERON:0007503,1.45e-08,78;UBERON:0005423,7.42e-08,581;UBERON:0002049,1.52e-07,78;UBERON:0007798,1.52e-07,78;UBERON:0000486,2.92e-07,83;UBERON:0002329,6.35e-07,71;UBERON:0003059,6.35e-07,71;UBERON:0007282,6.35e-07,71;UBERON:0004290,6.35e-07,71;UBERON:0009618,6.35e-07,71;UBERON:0000923,6.75e-07,560;UBERON:0010316,6.75e-07,560;UBERON:0005291,6.75e-07,560;UBERON:0006598,6.75e-07,560;UBERON:0010317,6.75e-07,560;UBERON:0002532,6.75e-07,560;UBERON:0002417,9.56e-07,60;UBERON:0000916,9.56e-07,60;UBERON:0007524,9.59e-07,73 | |||
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| ||
|short_description=p1@TBC1D16 | |||
}} | }} |
Latest revision as of 03:15, 18 September 2015
Short description: | p1@TBC1D16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TBC1D16_5end |
Coexpression cluster: | NA |
Association with transcript: | -15bp_to_ENST00000310924, NM_019020, uc002jxj.2_5end |
EntrezGene: | TBC1D16 |
HGNC: | 28356 |
UniProt: | Q8TBP0B9A6L7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.53e-20 | 250 |
mesodermal cell | 3.38e-12 | 121 |
endothelial cell | 5.57e-09 | 36 |
fat cell | 1.19e-08 | 15 |
neurectodermal cell | 1.33e-08 | 59 |
meso-epithelial cell | 2.10e-08 | 45 |
migratory neural crest cell | 7.70e-08 | 41 |
ectodermal cell | 1.33e-07 | 72 |
electrically responsive cell | 2.87e-07 | 61 |
electrically active cell | 2.87e-07 | 61 |
lining cell | 5.26e-07 | 58 |
barrier cell | 5.26e-07 | 58 |
epithelial cell | 8.20e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
cell layer | 5.23e-16 | 309 |
epithelium | 8.45e-16 | 306 |
mesenchyme | 4.78e-14 | 160 |
entire embryonic mesenchyme | 4.78e-14 | 160 |
trunk | 1.78e-13 | 199 |
epithelial tube | 1.81e-11 | 117 |
anatomical conduit | 3.62e-11 | 240 |
trunk mesenchyme | 4.48e-11 | 122 |
unilaminar epithelium | 6.55e-10 | 148 |
embryo | 1.96e-09 | 592 |
tube | 2.38e-09 | 192 |
subdivision of trunk | 6.40e-09 | 112 |
epithelial vesicle | 1.45e-08 | 78 |
developing anatomical structure | 7.42e-08 | 581 |
vasculature | 1.52e-07 | 78 |
vascular system | 1.52e-07 | 78 |
multilaminar epithelium | 2.92e-07 | 83 |
somite | 6.35e-07 | 71 |
presomitic mesoderm | 6.35e-07 | 71 |
presumptive segmental plate | 6.35e-07 | 71 |
dermomyotome | 6.35e-07 | 71 |
trunk paraxial mesoderm | 6.35e-07 | 71 |
germ layer | 6.75e-07 | 560 |
germ layer / neural crest | 6.75e-07 | 560 |
embryonic tissue | 6.75e-07 | 560 |
presumptive structure | 6.75e-07 | 560 |
germ layer / neural crest derived structure | 6.75e-07 | 560 |
epiblast (generic) | 6.75e-07 | 560 |
abdominal segment of trunk | 9.56e-07 | 60 |
abdomen | 9.56e-07 | 60 |
dense mesenchyme tissue | 9.59e-07 | 73 |