FFCP PHASE1:Hg19::chr17:39775837..39775848,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:39775837..39775848,- | |||
|coexpression_cluster_id=C1226 | |coexpression_cluster_id=C1226 | ||
|description=CAGE_peak_at_chr17:39775837..39775848,- | |description=CAGE_peak_at_chr17:39775837..39775848,- | ||
|id=chr17:39775837..39775848,- | |id=chr17:39775837..39775848,- | ||
|ontology_enrichment_celltype=CL:0000066!8.02e-20!254;CL:0002076!3.99e-19!43;CL:0002368!2.40e-18!13;CL:0000223!3.69e-14!59;CL:0000349!1.60e-10!3;CL:0002577!1.60e-10!3;CL:0002328!2.32e-10!3;CL:0002202!1.12e-08!9;CL:0002632!1.12e-08!9;CL:0002159!5.28e-08!13;CL:0000244!1.31e-07!4;CL:0000731!1.31e-07!4;CL:0002327!2.04e-07!4 | |ontology_enrichment_celltype=CL:0000066!8.02e-20!254;CL:0002076!3.99e-19!43;CL:0002368!2.40e-18!13;CL:0000223!3.69e-14!59;CL:0000349!1.60e-10!3;CL:0002577!1.60e-10!3;CL:0002328!2.32e-10!3;CL:0002202!1.12e-08!9;CL:0002632!1.12e-08!9;CL:0002159!5.28e-08!13;CL:0000244!1.31e-07!4;CL:0000731!1.31e-07!4;CL:0002327!2.04e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002577;1.63e-28;3!CL:0000622;1.35e-17;5!CL:0000154;9.14e-15;6!CL:0002231;3.19e-14;3!CL:0002076;3.20e-14;42!CL:0002623;2.06e-13;3!CL:0002368;3.39e-12;13!CL:0002252;1.10e-10;1!CL:0000244;1.50e-10;4!CL:0000731;1.50e-10;4!CL:0000150;4.96e-10;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,6.91e-29,3;CL:0000622,1.56e-17,5;CL:0002076,2.69e-17,42;CL:0000154,1.03e-14,6;CL:0002231,3.19e-14,3;CL:0002623,2.82e-13,3;CL:0002368,3.40e-12,13;CL:0000223,3.44e-12,58;CL:0002252,7.46e-11,1;CL:0000244,1.78e-10,4;CL:0000731,1.78e-10,4;CL:0000150,5.37e-10,9;CL:0000066,3.35e-08,253 | |||
|ontology_enrichment_development_v019=CL:0000223;3.33e-09;58 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3151;1.10e-10;1!DOID:3149;1.10e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,1.33e-10,1;DOID:3149,1.33e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.10e-16!72;UBERON:0000065!5.91e-16!53;UBERON:0004119!5.59e-15!169;UBERON:0000925!5.59e-15!169;UBERON:0006595!5.59e-15!169;UBERON:0008947!3.10e-12!38;UBERON:0003258!3.10e-12!38;UBERON:0000072!3.39e-11!46;UBERON:0001737!3.54e-11!9;UBERON:0004815!2.32e-10!3;UBERON:0002031!2.32e-10!3;UBERON:0007196!6.33e-10!14;UBERON:0001558!6.33e-10!14;UBERON:0000077!4.44e-09!130;UBERON:0001987!5.65e-08!4;UBERON:0004340!5.65e-08!4;UBERON:0002185!7.44e-08!4;UBERON:0001911!2.04e-07!4;UBERON:0005333!2.04e-07!4;UBERON:0008425!2.04e-07!4;UBERON:0005311!2.04e-07!4;UBERON:0003124!2.42e-07!7;UBERON:0001007!3.96e-07!155;UBERON:0001555!3.96e-07!155;UBERON:0007026!3.96e-07!155;UBERON:0003126!4.74e-07!7;UBERON:0001005!4.74e-07!7;UBERON:0001557!9.84e-07!19 | |ontology_enrichment_uberon=UBERON:0001004!2.10e-16!72;UBERON:0000065!5.91e-16!53;UBERON:0004119!5.59e-15!169;UBERON:0000925!5.59e-15!169;UBERON:0006595!5.59e-15!169;UBERON:0008947!3.10e-12!38;UBERON:0003258!3.10e-12!38;UBERON:0000072!3.39e-11!46;UBERON:0001737!3.54e-11!9;UBERON:0004815!2.32e-10!3;UBERON:0002031!2.32e-10!3;UBERON:0007196!6.33e-10!14;UBERON:0001558!6.33e-10!14;UBERON:0000077!4.44e-09!130;UBERON:0001987!5.65e-08!4;UBERON:0004340!5.65e-08!4;UBERON:0002185!7.44e-08!4;UBERON:0001911!2.04e-07!4;UBERON:0005333!2.04e-07!4;UBERON:0008425!2.04e-07!4;UBERON:0005311!2.04e-07!4;UBERON:0003124!2.42e-07!7;UBERON:0001007!3.96e-07!155;UBERON:0001555!3.96e-07!155;UBERON:0007026!3.96e-07!155;UBERON:0003126!4.74e-07!7;UBERON:0001005!4.74e-07!7;UBERON:0001557!9.84e-07!19 | ||
|ontology_enrichment_uberon_v019=UBERON:0001987;1.45e-21;4!UBERON:0007029;4.80e-11;1!UBERON:0000014;1.82e-10;4!UBERON:0000077;9.53e-09;27!UBERON:0000365;1.30e-08;5!UBERON:0005910;2.57e-07;6!UBERON:0001044;3.80e-07;6!UBERON:0003293;3.80e-07;6!UBERON:0003294;3.80e-07;6!UBERON:0010047;3.80e-07;6!UBERON:0003408;3.80e-07;6!UBERON:0000167;3.80e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001987,7.64e-22,4;UBERON:0004340,7.64e-22,4;UBERON:0003124,9.51e-13,7;UBERON:0004119,1.31e-12,160;UBERON:0000925,1.31e-12,160;UBERON:0006595,1.31e-12,160;UBERON:0007029,5.05e-11,1;UBERON:0000014,2.05e-10,4;UBERON:0006554,2.70e-09,47;UBERON:0001008,4.37e-09,48;UBERON:0000365,1.48e-08,5;UBERON:0000077,3.41e-08,29;UBERON:0005910,2.87e-07,6;UBERON:0001004,3.10e-07,74;UBERON:0001044,4.44e-07,6;UBERON:0003293,4.44e-07,6;UBERON:0003294,4.44e-07,6;UBERON:0010047,4.44e-07,6;UBERON:0000167,4.44e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.90361775633475,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0.661763836394364,0,0.474541238222193,0.539325232640658,0,1.15424147083917,0,0,0,0,0,0,0,0,0,0,1.64625428112938,0,0.703702806881416,0.740707561268237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0.283550194484773,0.447792613514241,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81876542867756,1.66435439510497,1.5119514666484,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,10.8273493963774,16.7587399863331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60024098414608,0,0,0,0,0,0,0,0,0,2.47927373041467,0.768760269460425,0.510450849978337,3.74283789165535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,0,2.17781969722645,0,0,3.36942951335251,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,0,0,0,0.0897576444097721,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.0870592065804026,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.733714394086716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,1.24329698497822,1.3657478167516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4285549652957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,2.39488422686657,0,0,0.502055437748735,0.332660356546013,0,0,0,0.0898252021065869,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0.90361775633475,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0.241011029883482,0.661763836394364,0,0.474541238222193,0.539325232640658,0,1.15424147083917,0,0,0,0,0,0,0,0,0,0,1.64625428112938,0,0.703702806881416,0.740707561268237,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.671928512795438,0.283550194484773,0.447792613514241,0.871901815541886,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81876542867756,1.66435439510497,1.5119514666484,0,0,0,0,0,0,0,0,0.177561725313127,0,0,0,0,10.8273493963774,16.7587399863331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60024098414608,0,0,0,0,0,0,0,0,0,2.47927373041467,0.768760269460425,0.510450849978337,3.74283789165535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.577332676353072,0,2.17781969722645,0,0,3.36942951335251,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,0,0,0,0.0897576444097721,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.0870592065804026,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34173875039706,0,0,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.733714394086716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,1.24329698497822,1.3657478167516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.4285549652957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0,0,0,0,0,2.39488422686657,0,0,0.502055437748735,0.332660356546013,0,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr17:39775837..39775848,- | |short_description=p@chr17:39775837..39775848,- | ||
}} | }} |
Latest revision as of 16:46, 25 July 2015
Short description: | p@chr17:39775837..39775848, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39775837..39775848, - |
Coexpression cluster: | C1226_Prostate_Mammary_giant_Small_tongue_nasal_Tracheal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 6.91e-29 | 3 |
acinar cell | 1.56e-17 | 5 |
endo-epithelial cell | 2.69e-17 | 42 |
protein secreting cell | 1.03e-14 | 6 |
epithelial cell of prostate | 3.19e-14 | 3 |
acinar cell of salivary gland | 2.82e-13 | 3 |
respiratory epithelial cell | 3.40e-12 | 13 |
endodermal cell | 3.44e-12 | 58 |
epithelial cell of esophagus | 7.46e-11 | 1 |
transitional epithelial cell | 1.78e-10 | 4 |
urothelial cell | 1.78e-10 | 4 |
glandular epithelial cell | 5.37e-10 | 9 |
epithelial cell | 3.35e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
placenta | 7.64e-22 | 4 |
allantois | 7.64e-22 | 4 |
chorion | 9.51e-13 | 7 |
endoderm-derived structure | 1.31e-12 | 160 |
endoderm | 1.31e-12 | 160 |
presumptive endoderm | 1.31e-12 | 160 |
surface | 5.05e-11 | 1 |
zone of skin | 2.05e-10 | 4 |
urinary system structure | 2.70e-09 | 47 |
renal system | 4.37e-09 | 48 |
urothelium | 1.48e-08 | 5 |
mixed endoderm/mesoderm-derived structure | 3.41e-08 | 29 |
transitional epithelium | 2.87e-07 | 6 |
respiratory system | 3.10e-07 | 74 |
saliva-secreting gland | 4.44e-07 | 6 |
gland of oral region | 4.44e-07 | 6 |
gland of foregut | 4.44e-07 | 6 |
oral gland | 4.44e-07 | 6 |
oral cavity | 4.44e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 1.33e-10 | 1 |
keratoacanthoma | 1.33e-10 | 1 |