FFCP PHASE1:Hg19::chr19:1584956..1584968,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-32bp_to_M77818_5end | |association_with_transcript=-32bp_to_M77818_5end | ||
|cluster_id=chr19:1584956..1584968,- | |||
|coexpression_cluster_id=C2478 | |coexpression_cluster_id=C2478 | ||
|description=CAGE_peak_2_at_M77818_5end | |description=CAGE_peak_2_at_M77818_5end | ||
|id=chr19:1584956..1584968,- | |id=chr19:1584956..1584968,- | ||
|ontology_enrichment_celltype=CL:0002541!1.90e-26!3;CL:0000039!8.60e-20!7;CL:0000586!8.60e-20!7;CL:0002536!1.23e-17!2;CL:0002574!2.46e-09!1;CL:0002537!1.46e-07!5 | |ontology_enrichment_celltype=CL:0002541!1.90e-26!3;CL:0000039!8.60e-20!7;CL:0000586!8.60e-20!7;CL:0002536!1.23e-17!2;CL:0002574!2.46e-09!1;CL:0002537!1.46e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.78e-46;3!CL:0000039;4.18e-35;7!CL:0000586;4.18e-35;7!CL:0000349;1.49e-28;19!CL:0002536;8.09e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,1.41e-46,3;CL:0000039,4.00e-35,7;CL:0000586,4.00e-35,7;CL:0000349,1.46e-28,19;CL:0002536,8.09e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.01e-24;10!UBERON:0005564;1.01e-24;10!UBERON:0003124;5.11e-17;1 | |||
|ontology_enrichment_disease=DOID:114!2.22e-17!2;DOID:178!1.62e-09!1;DOID:326!1.62e-09!1;DOID:3978!1.62e-09!1;DOID:3394!1.62e-09!1;DOID:5844!1.62e-09!1;DOID:1287!3.73e-09!4 | |ontology_enrichment_disease=DOID:114!2.22e-17!2;DOID:178!1.62e-09!1;DOID:326!1.62e-09!1;DOID:3978!1.62e-09!1;DOID:3394!1.62e-09!1;DOID:5844!1.62e-09!1;DOID:1287!3.73e-09!4 | ||
|ontology_enrichment_disease_v019=DOID:3095;1.96e-11;22!DOID:2994;1.96e-11;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,1.93e-11,22;DOID:2994,1.93e-11,22 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.68e-47!14;UBERON:0000158!1.68e-47!14;UBERON:0003124!1.31e-30!7;UBERON:0000478!3.31e-27!24;UBERON:0000476!1.90e-26!3;UBERON:0000920!1.90e-26!3;UBERON:0000305!3.27e-19!7;UBERON:0000473!2.38e-17!8;UBERON:0004871!7.64e-17!8;UBERON:0003135!1.13e-12!11;UBERON:0004923!1.05e-10!57;UBERON:0001987!1.43e-09!4;UBERON:0004340!1.43e-09!4 | |ontology_enrichment_uberon=UBERON:0005631!1.68e-47!14;UBERON:0000158!1.68e-47!14;UBERON:0003124!1.31e-30!7;UBERON:0000478!3.31e-27!24;UBERON:0000476!1.90e-26!3;UBERON:0000920!1.90e-26!3;UBERON:0000305!3.27e-19!7;UBERON:0000473!2.38e-17!8;UBERON:0004871!7.64e-17!8;UBERON:0003135!1.13e-12!11;UBERON:0004923!1.05e-10!57;UBERON:0001987!1.43e-09!4;UBERON:0004340!1.43e-09!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.78e-46;3!UBERON:0000920;1.78e-46;3!UBERON:0005631;6.20e-38;10!UBERON:0000158;6.20e-38;10!UBERON:0000473;8.81e-31;8!UBERON:0000478;1.13e-30;24!UBERON:0003135;1.63e-22;11!UBERON:0001987;2.01e-16;4!UBERON:0000991;5.77e-12;21!UBERON:0003101;1.96e-11;22!UBERON:0000079;1.96e-11;22!UBERON:0000305;1.47e-09;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003124,1.15e-54,7;UBERON:0005631,9.85e-53,14;UBERON:0000158,9.85e-53,14;UBERON:0000920,1.41e-46,3;UBERON:0000473,8.48e-31,8;UBERON:0000478,1.13e-30,24;UBERON:0003135,1.59e-22,11;UBERON:0001987,2.26e-16,4;UBERON:0004340,2.26e-16,4;UBERON:0000991,5.69e-12,21;UBERON:0009196,5.69e-12,21;UBERON:0009117,5.69e-12,21;UBERON:0005564,5.69e-12,21;UBERON:0004176,1.93e-11,22;UBERON:0003101,1.93e-11,22;UBERON:0000079,1.93e-11,22;UBERON:0003133,2.82e-11,48;UBERON:0004923,6.52e-11,66;UBERON:0000305,1.47e-09,7;UBERON:0005156,3.98e-09,59;UBERON:0000990,3.98e-09,59;UBERON:0004871,1.78e-08,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,3.03127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.60643540767028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14232723417828,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3874448473769,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4840417503491,1.64875668123352,5.86338253620498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0.429226048136571,0.223171457441873,0.268733889946905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,11.4426057509804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872701380680755,0,0,0,0,0,0,0,4.9974526573571,3.74104367371785,9.18948995348449,1.25353769646188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.436882744260345,1.58260186937072,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,3.03127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.60643540767028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14232723417828,0,0,0,0,0,0,0,0,0.411362273086194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3874448473769,0,0.307160702099232,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.4840417503491,1.64875668123352,5.86338253620498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0.429226048136571,0.223171457441873,0.268733889946905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,11.4426057509804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872701380680755,0,0,0,0,0,0,0,4.9974526573571,3.74104367371785,9.18948995348449,1.25353769646188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p2@M77818 | |short_description=p2@M77818 | ||
}} | }} |
Latest revision as of 04:36, 26 July 2015
Short description: | p2@M77818 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_M77818_5end |
Coexpression cluster: | C2478_testicular_chorionic_placenta_anaplastic_amniotic_choriocarcinoma_Placental |
Association with transcript: | -32bp_to_M77818_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 1.41e-46 | 3 |
germ line cell | 4.00e-35 | 7 |
germ cell | 4.00e-35 | 7 |
extraembryonic cell | 1.46e-28 | 19 |
amniotic epithelial cell | 8.09e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
chorion | 1.15e-54 | 7 |
extraembryonic membrane | 9.85e-53 | 14 |
membranous layer | 9.85e-53 | 14 |
egg chorion | 1.41e-46 | 3 |
testis | 8.48e-31 | 8 |
extraembryonic structure | 1.13e-30 | 24 |
male reproductive organ | 1.59e-22 | 11 |
placenta | 2.26e-16 | 4 |
allantois | 2.26e-16 | 4 |
gonad | 5.69e-12 | 21 |
indifferent external genitalia | 5.69e-12 | 21 |
indifferent gonad | 5.69e-12 | 21 |
gonad primordium | 5.69e-12 | 21 |
external genitalia | 1.93e-11 | 22 |
male organism | 1.93e-11 | 22 |
male reproductive system | 1.93e-11 | 22 |
reproductive organ | 2.82e-11 | 48 |
organ component layer | 6.52e-11 | 66 |
amnion | 1.47e-09 | 7 |
reproductive structure | 3.98e-09 | 59 |
reproductive system | 3.98e-09 | 59 |
somatic layer of lateral plate mesoderm | 1.78e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 1.93e-11 | 22 |
germ cell cancer | 1.93e-11 | 22 |