UBERON:0002346: Difference between revisions
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{{UBERON | {{UBERON | ||
|alt_id=UBERON:FMA_87657-MIAA_0000176-XAO_0000042-ZFA_0001120 | |alt_id=UBERON:FMA_87657-MIAA_0000176-XAO_0000042-ZFA_0001120 | ||
| | |comment=Terminology notes: we prefer neurectoderm to neural ectoderm since placodal ectoderm is not classified here | ||
|created_by= | |created_by= | ||
| | |def="Embryonic ectoderm that gives rise to nervous tissue." [Wikipedia:Neuroectoderm] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from=UBERON:0000924 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002346 | |||
|is_a=UBERON:0000923 ;;UBERON:0004121 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=neurectoderm | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="epithelium tubi neuralis; neuroectoderma" RELATED LATIN [Wikipedia:Neuroectoderm];;"neuaral ectoderm" RELATED [];;"neural ectoderm" EXACT [];;"neuroectoderm" EXACT [];;"presumptive central nervous system" RELATED [] | ||
|union_of= | |||
|xref=AAO:0011074;;BILA:0000039;;EHDAA2:0001248;;EHDAA:1498;;EHDAA:255;;EMAPA:16073;;EV:0100004;;FBbt:00001061;;FMA:87657;;MAT:0000176;;MIAA:0000176;;ncithesaurus:Neuroectoderm;;TAO:0001120;;VHOG:0000150;;XAO:0000042;;ZFA:0001120 | |||
}} | }} | ||
Latest revision as of 17:29, 12 September 2014
| Name: | neurectoderm | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "Embryonic ectoderm that gives rise to nervous tissue." [Wikipedia:Neuroectoderm] | |
| Xrefs: |
| |
| Synonyms: |
"epithelium tubi neuralis; neuroectoderma" RELATED LATIN [Wikipedia:Neuroectoderm] "neuaral ectoderm" RELATED [] "neural ectoderm" EXACT [] "neuroectoderm" EXACT [] "presumptive central nervous system" RELATED [] | |
| Comments: | Terminology notes: we prefer neurectoderm to neural ectoderm since placodal ectoderm is not classified here | |
| Alt_id: | UBERON:FMA_87657-MIAA_0000176-XAO_0000042-ZFA_0001120 | |
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000923(germ layer),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0000924(ectoderm) |
Children
| is a: | FF:10637-108I7 (neuroectodermal tumor cell line:FU-RPNT-1),FF:10663-109C6 (neuroectodermal tumor cell line:FU-RPNT-2),FF:10697-109G4 (peripheral neuroectodermal tumor cell line:KU-SN),FF:10774-110F9 (neuroectodermal tumor cell line:TASK1) |
|---|---|
| develops from: | UBERON:0001775 (ciliary body),UBERON:0003050 (olfactory placode),UBERON:0003075 (neural plate),UBERON:0004128 (optic vesicle),UBERON:0007284 (presumptive neural plate) |
| part of: | UBERON:0002342 (neural crest),UBERON:0003075 (neural plate),UBERON:0006238 (future brain) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10637-108I7 (neuroectodermal tumor cell line:FU-RPNT-1)
- 10663-109C6 (neuroectodermal tumor cell line:FU-RPNT-2)
- 10697-109G4 (peripheral neuroectodermal tumor cell line:KU-SN)
- 10774-110F9 (neuroectodermal tumor cell line:TASK1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002346 (neurectoderm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
